RNA–Protein interactions for RNA: ENST00000566818.1

IFT140-208, Transcript of intraflagellar transport 140, human

TSL 3

Gene IFT140, Length 722 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IFT140-208	ENST00000566818	TCOF1	Q13428	1488 aa	Known RBP	29.23	■■■□□ 2.27
IFT140-208	ENST00000566818	DMRT2	Q9Y5R5	561 aa		29.23	■■■□□ 2.27
IFT140-208	ENST00000566818	STRC	Q7RTU9	1775 aa		29.23	■■■□□ 2.27
IFT140-208	ENST00000566818	ZNF142	P52746	1687 aa	Predicted RBP	29.22	■■■□□ 2.27
IFT140-208	ENST00000566818	RNF17	Q9BXT8	1623 aa	Known RBP	29.22	■■■□□ 2.27
IFT140-208	ENST00000566818	DNMT1	P26358	1616 aa	Known RBP	29.2	■■■□□ 2.27
IFT140-208	ENST00000566818	DUOX2	Q9NRD8	1548 aa		29.2	■■■□□ 2.26
IFT140-208	ENST00000566818	WASHC2C	Q9Y4E1	1318 aa		29.19	■■■□□ 2.26
IFT140-208	ENST00000566818	ABCC5	O15440	1437 aa		29.18	■■■□□ 2.26
IFT140-208	ENST00000566818	DAPK1	P53355	1430 aa		29.18	■■■□□ 2.26
IFT140-208	ENST00000566818	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	29.18	■■■□□ 2.26
IFT140-208	ENST00000566818	PZP	P20742	1482 aa		29.17	■■■□□ 2.26
IFT140-208	ENST00000566818	ZC3H13	Q5T200	1668 aa	Known RBP	29.17	■■■□□ 2.26
IFT140-208	ENST00000566818	NCOA1	Q15788	1441 aa		29.17	■■■□□ 2.26
IFT140-208	ENST00000566818	CAMSAP1	Q5T5Y3	1602 aa		29.15	■■■□□ 2.26
IFT140-208	ENST00000566818	KIF15	Q9NS87	1388 aa		29.14	■■■□□ 2.26
IFT140-208	ENST00000566818	PTPRT	O14522	1441 aa		29.13	■■■□□ 2.25
IFT140-208	ENST00000566818	FBXO41	Q8TF61	875 aa		29.12	■■■□□ 2.25
IFT140-208	ENST00000566818	ERBIN	Q96RT1	1412 aa		29.11	■■■□□ 2.25
IFT140-208	ENST00000566818	TNR	Q92752	1358 aa		29.11	■■■□□ 2.25
IFT140-208	ENST00000566818	ABCC3	O15438	1527 aa		29.1	■■■□□ 2.25
IFT140-208	ENST00000566818	A2ML1	A8K2U0	1454 aa		29.1	■■■□□ 2.25
IFT140-208	ENST00000566818	PLA2R1	Q13018	1463 aa		29.09	■■■□□ 2.25
IFT140-208	ENST00000566818	MROH1	Q8NDA8	1641 aa		29.09	■■■□□ 2.25
IFT140-208	ENST00000566818	ANKRD30A	Q9BXX3	1397 aa		29.06	■■■□□ 2.24
IFT140-208	ENST00000566818	RRP7BP	Q9NSQ0	103 aa		29.05	■■■□□ 2.24
IFT140-208	ENST00000566818	PRDM15	P57071	1507 aa	Predicted RBP	29.04	■■■□□ 2.24
IFT140-208	ENST00000566818	FBXO31	Q5XUX0	539 aa	Predicted RBP	29.03	■■■□□ 2.24
IFT140-208	ENST00000566818	CERK	Q8TCT0	537 aa		29.02	■■■□□ 2.24
IFT140-208	ENST00000566818	CEP152	O94986	1710 aa		29.02	■■■□□ 2.24
IFT140-208	ENST00000566818	FAM50A	Q14320	339 aa	Known RBP	29.01	■■■□□ 2.23
IFT140-208	ENST00000566818	NLRP1	Q9C000	1473 aa		29.01	■■■□□ 2.23
IFT140-208	ENST00000566818	PKD2	Q13563	968 aa		29	■■■□□ 2.23
IFT140-208	ENST00000566818	CHIC2	Q9UKJ5	165 aa		28.99	■■■□□ 2.23
IFT140-208	ENST00000566818	DEPDC5	O75140	1603 aa		28.98	■■■□□ 2.23
IFT140-208	ENST00000566818	ADGRL2	O95490	1459 aa		28.98	■■■□□ 2.23
IFT140-208	ENST00000566818	SPATA31D1	Q6ZQQ2	1576 aa		28.97	■■■□□ 2.23
IFT140-208	ENST00000566818	NCKAP5L	Q9HCH0	1330 aa		28.96	■■■□□ 2.23
IFT140-208	ENST00000566818	KANK1	Q14678	1352 aa		28.95	■■■□□ 2.22
IFT140-208	ENST00000566818	ERVK-7	P63135	1459 aa		28.95	■■■□□ 2.22
IFT140-208	ENST00000566818	UGGT1	Q9NYU2	1555 aa		28.92	■■■□□ 2.22
IFT140-208	ENST00000566818	POLR1A	O95602	1720 aa	Predicted RBP	28.91	■■■□□ 2.22
IFT140-208	ENST00000566818	ARHGAP31	Q2M1Z3	1444 aa		28.9	■■■□□ 2.22
IFT140-208	ENST00000566818	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.89	■■■□□ 2.22
IFT140-208	ENST00000566818	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.87	■■■□□ 2.21
IFT140-208	ENST00000566818	LTBP4	Q8N2S1	1624 aa		28.87	■■■□□ 2.21
IFT140-208	ENST00000566818	LMTK2	Q8IWU2	1503 aa		28.85	■■■□□ 2.21
IFT140-208	ENST00000566818	VWDE	Q8N2E2	1590 aa		28.84	■■■□□ 2.21
IFT140-208	ENST00000566818	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.83	■■■□□ 2.21
IFT140-208	ENST00000566818	ANKRD50	Q9ULJ7	1429 aa		28.83	■■■□□ 2.21
IFT140-208	ENST00000566818	IQSEC2	Q5JU85	1478 aa		28.82	■■■□□ 2.2
IFT140-208	ENST00000566818	NEURL4	Q96JN8	1562 aa		28.82	■■■□□ 2.2
IFT140-208	ENST00000566818	ANKLE2	Q86XL3	938 aa		28.8	■■■□□ 2.2
IFT140-208	ENST00000566818	CFAP65	Q6ZU64	1925 aa	Known RBP	28.8	■■■□□ 2.2
IFT140-208	ENST00000566818	EFCAB6	Q5THR3	1501 aa		28.78	■■■□□ 2.2
IFT140-208	ENST00000566818	ROCK1	Q13464	1354 aa		28.77	■■■□□ 2.2
IFT140-208	ENST00000566818	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.77	■■■□□ 2.2
IFT140-208	ENST00000566818	UBR1	Q8IWV7	1749 aa		28.76	■■■□□ 2.19
IFT140-208	ENST00000566818	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.75	■■■□□ 2.19
IFT140-208	ENST00000566818	MED14	O60244	1454 aa		28.73	■■■□□ 2.19
IFT140-208	ENST00000566818	NPHP4	O75161	1426 aa	Predicted RBP	28.73	■■■□□ 2.19
IFT140-208	ENST00000566818	UNC13B	O14795	1591 aa		28.71	■■■□□ 2.19
IFT140-208	ENST00000566818	IQGAP1	P46940	1657 aa		28.7	■■■□□ 2.18
IFT140-208	ENST00000566818	RPRD2	Q5VT52	1461 aa	Known RBP	28.68	■■■□□ 2.18
IFT140-208	ENST00000566818	PIK3C2B	O00750	1634 aa		28.68	■■■□□ 2.18
IFT140-208	ENST00000566818	TET3	O43151	1660 aa		28.67	■■■□□ 2.18
IFT140-208	ENST00000566818	ITGAE	P38570	1179 aa		28.66	■■■□□ 2.18
IFT140-208	ENST00000566818	KDM5A	P29375	1690 aa	Known RBP	28.66	■■■□□ 2.18
IFT140-208	ENST00000566818	SLIT1	O75093	1534 aa		28.65	■■■□□ 2.18
IFT140-208	ENST00000566818	CPS1	P31327	1500 aa		28.65	■■■□□ 2.18
IFT140-208	ENST00000566818	NOS1	P29475	1434 aa		28.65	■■■□□ 2.18
IFT140-208	ENST00000566818	SYNM	O15061	1565 aa		28.65	■■■□□ 2.18
IFT140-208	ENST00000566818	SCAF11	Q99590	1463 aa	Known RBP	28.65	■■■□□ 2.18
IFT140-208	ENST00000566818	ARHGAP23	Q9P227	1491 aa		28.64	■■■□□ 2.17
IFT140-208	ENST00000566818	GCC2	Q8IWJ2	1684 aa		28.64	■■■□□ 2.17
IFT140-208	ENST00000566818	STAG3	Q9UJ98	1225 aa		28.63	■■■□□ 2.17
IFT140-208	ENST00000566818	RRBP1	Q9P2E9	1410 aa	Known RBP	28.62	■■■□□ 2.17
IFT140-208	ENST00000566818	ADGRB3	O60242	1522 aa		28.59	■■■□□ 2.17
IFT140-208	ENST00000566818	IQGAP3	Q86VI3	1631 aa		28.59	■■■□□ 2.17
IFT140-208	ENST00000566818	EID1	Q9Y6B2	187 aa		28.58	■■■□□ 2.17
IFT140-208	ENST00000566818	TMEM2	Q9UHN6	1383 aa		28.57	■■■□□ 2.16
IFT140-208	ENST00000566818	IDI1	Q13907	227 aa		28.56	■■■□□ 2.16
IFT140-208	ENST00000566818	SLC52A1	Q9NWF4	448 aa		28.56	■■■□□ 2.16
IFT140-208	ENST00000566818	TXNDC2	Q86VQ3	553 aa		28.55	■■■□□ 2.16
IFT140-208	ENST00000566818	NUP155	O75694	1391 aa		28.51	■■■□□ 2.16
IFT140-208	ENST00000566818	UBAP1L	F5GYI3	381 aa		28.51	■■■□□ 2.15
IFT140-208	ENST00000566818	LTK	P29376	864 aa		28.51	■■■□□ 2.15
IFT140-208	ENST00000566818		E9PCH4	1651 aa		28.51	■■■□□ 2.15
IFT140-208	ENST00000566818	STRCP1	A6NGW2	1772 aa		28.42	■■■□□ 2.14
IFT140-208	ENST00000566818	TMEM131L	A2VDJ0	1609 aa		28.41	■■■□□ 2.14
IFT140-208	ENST00000566818	NAIP	Q13075	1403 aa		28.4	■■■□□ 2.14
IFT140-208	ENST00000566818	LRRC7	Q96NW7	1537 aa		28.39	■■■□□ 2.14
IFT140-208	ENST00000566818	TOM1	O60784	492 aa		28.39	■■■□□ 2.14
IFT140-208	ENST00000566818	MYO5B	Q9ULV0	1848 aa		28.39	■■■□□ 2.13
IFT140-208	ENST00000566818	ZFYVE9	O95405	1425 aa		28.36	■■■□□ 2.13
IFT140-208	ENST00000566818	HDGF	P51858	240 aa	Known RBP	28.36	■■■□□ 2.13
IFT140-208	ENST00000566818	HFM1	A2PYH4	1435 aa		28.35	■■■□□ 2.13
IFT140-208	ENST00000566818	RIMS2	Q9UQ26	1411 aa		28.35	■■■□□ 2.13
IFT140-208	ENST00000566818	CHGA	P10645	457 aa	Known RBP	28.34	■■■□□ 2.13
IFT140-208	ENST00000566818	SPHKAP	Q2M3C7	1700 aa		28.34	■■■□□ 2.13

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms