RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 TRIM26Q12899 539 aaPredicted RBP14.03□□□□□ -0.16
SMPD3-207ENST00000566466 DEPDC5O75140 1603 aa14.03□□□□□ -0.16
SMPD3-207ENST00000566466 ANKRD50Q9ULJ7 1429 aa14.02□□□□□ -0.16
SMPD3-207ENST00000566466 VWDEQ8N2E2 1590 aa14.01□□□□□ -0.17
SMPD3-207ENST00000566466 UNC13BO14795 1591 aa14□□□□□ -0.17
SMPD3-207ENST00000566466 PRDM15P57071 1507 aaPredicted RBP14□□□□□ -0.17
SMPD3-207ENST00000566466 ADAMTSL3P82987 1691 aa13.98□□□□□ -0.17
SMPD3-207ENST00000566466 KDM5DQ9BY66 1539 aa13.97□□□□□ -0.17
SMPD3-207ENST00000566466 SETD5Q9C0A6 1442 aa13.97□□□□□ -0.17
SMPD3-207ENST00000566466 RAB3GAP2Q9H2M9 1393 aa13.96□□□□□ -0.18
SMPD3-207ENST00000566466 MYT1LQ9UL68 1186 aa13.95□□□□□ -0.18
SMPD3-207ENST00000566466 ABCC3O15438 1527 aa13.94□□□□□ -0.18
SMPD3-207ENST00000566466 LMTK2Q8IWU2 1503 aa13.94□□□□□ -0.18
SMPD3-207ENST00000566466 PZPP20742 1482 aa13.93□□□□□ -0.18
SMPD3-207ENST00000566466 KIF3BO15066 747 aa13.93□□□□□ -0.18
SMPD3-207ENST00000566466 MADDQ8WXG6 1647 aa13.93□□□□□ -0.18
SMPD3-207ENST00000566466 IQGAP3Q86VI3 1631 aa13.92□□□□□ -0.18
SMPD3-207ENST00000566466 FAM135AQ9P2D6 1515 aa13.91□□□□□ -0.18
SMPD3-207ENST00000566466 CEP152O94986 1710 aa13.9□□□□□ -0.18
SMPD3-207ENST00000566466 KDM4FA0A1W2PPD8 638 aa13.89□□□□□ -0.19
SMPD3-207ENST00000566466 PCGF6Q9BYE7 350 aa13.89□□□□□ -0.19
SMPD3-207ENST00000566466 ZC3H13Q5T200 1668 aaKnown RBP13.88□□□□□ -0.19
SMPD3-207ENST00000566466 CLTCQ00610 1675 aaKnown RBP13.88□□□□□ -0.19
SMPD3-207ENST00000566466 FER1L4A9Z1Z3 1794 aa13.87□□□□□ -0.19
SMPD3-207ENST00000566466 EFCAB6Q5THR3 1501 aa13.87□□□□□ -0.19
SMPD3-207ENST00000566466 MLECQ14165 292 aa13.87□□□□□ -0.19
SMPD3-207ENST00000566466 GGT6Q6P531 493 aa13.87□□□□□ -0.19
SMPD3-207ENST00000566466 ARID4BQ4LE39 1312 aaPredicted RBP13.87□□□□□ -0.19
SMPD3-207ENST00000566466 CAMSAP1Q5T5Y3 1602 aa13.86□□□□□ -0.19
SMPD3-207ENST00000566466 HRCP23327 699 aa13.86□□□□□ -0.19
SMPD3-207ENST00000566466 MROH2AA6NES4 1674 aa13.85□□□□□ -0.19
SMPD3-207ENST00000566466 TET3O43151 1660 aa13.85□□□□□ -0.19
SMPD3-207ENST00000566466 RIMS1Q86UR5 1692 aaKnown RBP13.85□□□□□ -0.19
SMPD3-207ENST00000566466 NUP155O75694 1391 aa13.85□□□□□ -0.19
SMPD3-207ENST00000566466 NPATQ14207 1427 aa13.85□□□□□ -0.19
SMPD3-207ENST00000566466 ARHGAP31Q2M1Z3 1444 aa13.84□□□□□ -0.19
SMPD3-207ENST00000566466 E9PCH4 1651 aa13.83□□□□□ -0.2
SMPD3-207ENST00000566466 C3P01024 1663 aa13.83□□□□□ -0.2
SMPD3-207ENST00000566466 CNTLNQ9NXG0 1405 aa13.82□□□□□ -0.2
SMPD3-207ENST00000566466 PTPRMP28827 1452 aa13.82□□□□□ -0.2
SMPD3-207ENST00000566466 PLA2R1Q13018 1463 aa13.82□□□□□ -0.2
SMPD3-207ENST00000566466 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.82□□□□□ -0.2
SMPD3-207ENST00000566466 SPATA31D1Q6ZQQ2 1576 aa13.81□□□□□ -0.2
SMPD3-207ENST00000566466 ZMYM3Q14202 1370 aa13.81□□□□□ -0.2
SMPD3-207ENST00000566466 NOS1P29475 1434 aa13.81□□□□□ -0.2
SMPD3-207ENST00000566466 DHX57Q6P158 1386 aaKnown RBP13.8□□□□□ -0.2
SMPD3-207ENST00000566466 ERVK-7P63135 1459 aa13.8□□□□□ -0.2
SMPD3-207ENST00000566466 SYNMO15061 1565 aa13.79□□□□□ -0.2
SMPD3-207ENST00000566466 WASHC2CQ9Y4E1 1318 aa13.79□□□□□ -0.2
SMPD3-207ENST00000566466 PTPRTO14522 1441 aa13.79□□□□□ -0.2
SMPD3-207ENST00000566466 KANK1Q14678 1352 aa13.78□□□□□ -0.2
SMPD3-207ENST00000566466 RPRD2Q5VT52 1461 aaKnown RBP13.78□□□□□ -0.2
SMPD3-207ENST00000566466 PREX1Q8TCU6 1659 aa13.78□□□□□ -0.2
SMPD3-207ENST00000566466 CEBPAP49715 358 aaPredicted RBP13.77□□□□□ -0.21
SMPD3-207ENST00000566466 FBXO31Q5XUX0 539 aaPredicted RBP13.77□□□□□ -0.21
SMPD3-207ENST00000566466 MPHOSPH9Q99550 1183 aa13.77□□□□□ -0.21
SMPD3-207ENST00000566466 UGGT1Q9NYU2 1555 aa13.75□□□□□ -0.21
SMPD3-207ENST00000566466 TRIM52Q96A61 297 aa13.75□□□□□ -0.21
SMPD3-207ENST00000566466 PIK3C2BO00750 1634 aa13.75□□□□□ -0.21
SMPD3-207ENST00000566466 PKD2Q13563 968 aa13.74□□□□□ -0.21
SMPD3-207ENST00000566466 TRPM2O94759 1503 aa13.74□□□□□ -0.21
SMPD3-207ENST00000566466 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
SMPD3-207ENST00000566466 SPHKAPQ2M3C7 1700 aa13.73□□□□□ -0.21
SMPD3-207ENST00000566466 ANKRD30BQ9BXX2 1392 aa13.72□□□□□ -0.21
SMPD3-207ENST00000566466 CLTCL1P53675 1640 aa13.72□□□□□ -0.21
SMPD3-207ENST00000566466 MYO3AQ8NEV4 1616 aa13.71□□□□□ -0.22
SMPD3-207ENST00000566466 ACIN1Q9UKV3 1341 aaKnown RBP13.7□□□□□ -0.22
SMPD3-207ENST00000566466 TNRQ92752 1358 aa13.69□□□□□ -0.22
SMPD3-207ENST00000566466 ZNF142P52746 1687 aaPredicted RBP13.68□□□□□ -0.22
SMPD3-207ENST00000566466 ADGRB3O60242 1522 aa13.66□□□□□ -0.22
SMPD3-207ENST00000566466 LMTK3Q96Q04 1460 aa13.66□□□□□ -0.22
SMPD3-207ENST00000566466 CEP170BQ9Y4F5 1589 aaPredicted RBP13.66□□□□□ -0.22
SMPD3-207ENST00000566466 ESF1Q9H501 851 aaKnown RBP13.65□□□□□ -0.22
SMPD3-207ENST00000566466 NLRP1Q9C000 1473 aa13.65□□□□□ -0.22
SMPD3-207ENST00000566466 SPATA31E1Q6ZUB1 1445 aa13.64□□□□□ -0.23
SMPD3-207ENST00000566466 TMEM131LA2VDJ0 1609 aa13.64□□□□□ -0.23
SMPD3-207ENST00000566466 A2ML1A8K2U0 1454 aa13.64□□□□□ -0.23
SMPD3-207ENST00000566466 IDI1Q13907 227 aa13.64□□□□□ -0.23
SMPD3-207ENST00000566466 CFAP65Q6ZU64 1925 aaKnown RBP13.64□□□□□ -0.23
SMPD3-207ENST00000566466 UBR1Q8IWV7 1749 aa13.64□□□□□ -0.23
SMPD3-207ENST00000566466 KCNA4P22459 653 aa13.62□□□□□ -0.23
SMPD3-207ENST00000566466 NEURL4Q96JN8 1562 aa13.62□□□□□ -0.23
SMPD3-207ENST00000566466 KDM5AP29375 1690 aaKnown RBP13.61□□□□□ -0.23
SMPD3-207ENST00000566466 ARHGAP23Q9P227 1491 aa13.61□□□□□ -0.23
SMPD3-207ENST00000566466 CCDC144AA2RUR9 1427 aa13.6□□□□□ -0.23
SMPD3-207ENST00000566466 ZFYVE9O95405 1425 aa13.59□□□□□ -0.23
SMPD3-207ENST00000566466 UHRF1BP1Q6BDS2 1440 aa13.59□□□□□ -0.23
SMPD3-207ENST00000566466 SLC52A1Q9NWF4 448 aa13.59□□□□□ -0.23
SMPD3-207ENST00000566466 MYO5BQ9ULV0 1848 aa13.59□□□□□ -0.23
SMPD3-207ENST00000566466 SIN3AQ96ST3 1273 aa13.58□□□□□ -0.24
SMPD3-207ENST00000566466 SLIT1O75093 1534 aa13.58□□□□□ -0.24
SMPD3-207ENST00000566466 NEXMIFQ5QGS0 1516 aa13.58□□□□□ -0.24
SMPD3-207ENST00000566466 SETD1BQ9UPS6 1966 aaKnown RBP13.58□□□□□ -0.24
SMPD3-207ENST00000566466 PPP4R3CPQ6ZMV5 832 aa13.56□□□□□ -0.24
SMPD3-207ENST00000566466 IFT172Q9UG01 1749 aa13.56□□□□□ -0.24
SMPD3-207ENST00000566466 CLSPNQ9HAW4 1339 aa13.54□□□□□ -0.24
SMPD3-207ENST00000566466 TMEM2Q9UHN6 1383 aa13.54□□□□□ -0.24
SMPD3-207ENST00000566466 KIF1BO60333 1816 aa13.53□□□□□ -0.24
SMPD3-207ENST00000566466 HSPA2P54652 639 aa13.52□□□□□ -0.25
SMPD3-207ENST00000566466 NRXN1Q9ULB1 1477 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms