RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 LMTK3Q96Q04 1460 aa23.72■■□□□ 1.39
COMMD4-212ENST00000565517 RNF17Q9BXT8 1623 aaKnown RBP23.72■■□□□ 1.39
COMMD4-212ENST00000565517 PREX1Q8TCU6 1659 aa23.71■■□□□ 1.39
COMMD4-212ENST00000565517 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.71■■□□□ 1.39
COMMD4-212ENST00000565517 RRP7BPQ9NSQ0 103 aa23.7■■□□□ 1.38
COMMD4-212ENST00000565517 ADGRL2O95490 1459 aa23.69■■□□□ 1.38
COMMD4-212ENST00000565517 NCOA1Q15788 1441 aa23.69■■□□□ 1.38
COMMD4-212ENST00000565517 ERBINQ96RT1 1412 aa23.68■■□□□ 1.38
COMMD4-212ENST00000565517 CHIC2Q9UKJ5 165 aa23.68■■□□□ 1.38
COMMD4-212ENST00000565517 NPATQ14207 1427 aa23.67■■□□□ 1.38
COMMD4-212ENST00000565517 KDM5DQ9BY66 1539 aa23.67■■□□□ 1.38
COMMD4-212ENST00000565517 WASHC2CQ9Y4E1 1318 aa23.65■■□□□ 1.38
COMMD4-212ENST00000565517 UHRF1BP1Q6BDS2 1440 aa23.63■■□□□ 1.37
COMMD4-212ENST00000565517 ZC3H13Q5T200 1668 aaKnown RBP23.63■■□□□ 1.37
COMMD4-212ENST00000565517 MROH1Q8NDA8 1641 aa23.62■■□□□ 1.37
COMMD4-212ENST00000565517 PTPRKQ15262 1439 aa23.61■■□□□ 1.37
COMMD4-212ENST00000565517 RRBP1Q9P2E9 1410 aaKnown RBP23.61■■□□□ 1.37
COMMD4-212ENST00000565517 DEPDC5O75140 1603 aa23.59■■□□□ 1.37
COMMD4-212ENST00000565517 ROCK1Q13464 1354 aa23.58■■□□□ 1.37
COMMD4-212ENST00000565517 ABCC3O15438 1527 aa23.58■■□□□ 1.36
COMMD4-212ENST00000565517 PRDM15P57071 1507 aaPredicted RBP23.58■■□□□ 1.36
COMMD4-212ENST00000565517 PZPP20742 1482 aa23.57■■□□□ 1.36
COMMD4-212ENST00000565517 HSPA2P54652 639 aa23.57■■□□□ 1.36
COMMD4-212ENST00000565517 CEP152O94986 1710 aa23.55■■□□□ 1.36
COMMD4-212ENST00000565517 ANKRD50Q9ULJ7 1429 aa23.54■■□□□ 1.36
COMMD4-212ENST00000565517 KANK1Q14678 1352 aa23.52■■□□□ 1.36
COMMD4-212ENST00000565517 CAMSAP1Q5T5Y3 1602 aa23.51■■□□□ 1.35
COMMD4-212ENST00000565517 MYO3AQ8NEV4 1616 aa23.51■■□□□ 1.35
COMMD4-212ENST00000565517 ZNF142P52746 1687 aaPredicted RBP23.51■■□□□ 1.35
COMMD4-212ENST00000565517 ITGAEP38570 1179 aa23.5■■□□□ 1.35
COMMD4-212ENST00000565517 FBXO31Q5XUX0 539 aaPredicted RBP23.5■■□□□ 1.35
COMMD4-212ENST00000565517 VWDEQ8N2E2 1590 aa23.49■■□□□ 1.35
COMMD4-212ENST00000565517 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.49■■□□□ 1.35
COMMD4-212ENST00000565517 ARHGAP31Q2M1Z3 1444 aa23.48■■□□□ 1.35
COMMD4-212ENST00000565517 CFAP65Q6ZU64 1925 aaKnown RBP23.47■■□□□ 1.35
COMMD4-212ENST00000565517 TNRQ92752 1358 aa23.47■■□□□ 1.35
COMMD4-212ENST00000565517 LMTK2Q8IWU2 1503 aa23.47■■□□□ 1.35
COMMD4-212ENST00000565517 CEP170BQ9Y4F5 1589 aaPredicted RBP23.46■■□□□ 1.35
COMMD4-212ENST00000565517 STRCQ7RTU9 1775 aa23.45■■□□□ 1.34
COMMD4-212ENST00000565517 SPATA31D1Q6ZQQ2 1576 aa23.45■■□□□ 1.34
COMMD4-212ENST00000565517 A2ML1A8K2U0 1454 aa23.43■■□□□ 1.34
COMMD4-212ENST00000565517 ERVK-7P63135 1459 aa23.43■■□□□ 1.34
COMMD4-212ENST00000565517 UNC13BO14795 1591 aa23.42■■□□□ 1.34
COMMD4-212ENST00000565517 NLRP1Q9C000 1473 aa23.41■■□□□ 1.34
COMMD4-212ENST00000565517 DMRT2Q9Y5R5 561 aa23.4■■□□□ 1.34
COMMD4-212ENST00000565517 PLA2R1Q13018 1463 aa23.37■■□□□ 1.33
COMMD4-212ENST00000565517 EFCAB6Q5THR3 1501 aa23.37■■□□□ 1.33
COMMD4-212ENST00000565517 TET3O43151 1660 aa23.35■■□□□ 1.33
COMMD4-212ENST00000565517 GCC2Q8IWJ2 1684 aa23.35■■□□□ 1.33
COMMD4-212ENST00000565517 NAIPQ13075 1403 aa23.33■■□□□ 1.33
COMMD4-212ENST00000565517 IQGAP3Q86VI3 1631 aa23.33■■□□□ 1.33
COMMD4-212ENST00000565517 RPRD2Q5VT52 1461 aaKnown RBP23.33■■□□□ 1.33
COMMD4-212ENST00000565517 PTPRTO14522 1441 aa23.33■■□□□ 1.32
COMMD4-212ENST00000565517 UGGT1Q9NYU2 1555 aa23.32■■□□□ 1.32
COMMD4-212ENST00000565517 PKD2Q13563 968 aa23.32■■□□□ 1.32
COMMD4-212ENST00000565517 THEMISQ8N1K5 641 aaPredicted RBP23.32■■□□□ 1.32
COMMD4-212ENST00000565517 HFM1A2PYH4 1435 aa23.3■■□□□ 1.32
COMMD4-212ENST00000565517 NUP155O75694 1391 aa23.29■■□□□ 1.32
COMMD4-212ENST00000565517 NOS1P29475 1434 aa23.29■■□□□ 1.32
COMMD4-212ENST00000565517 UBR1Q8IWV7 1749 aa23.27■■□□□ 1.32
COMMD4-212ENST00000565517 NCKAP5LQ9HCH0 1330 aa23.27■■□□□ 1.32
COMMD4-212ENST00000565517 POLR1AO95602 1720 aaPredicted RBP23.26■■□□□ 1.31
COMMD4-212ENST00000565517 SYNMO15061 1565 aa23.25■■□□□ 1.31
COMMD4-212ENST00000565517 E9PCH4 1651 aa23.25■■□□□ 1.31
COMMD4-212ENST00000565517 KDM5AP29375 1690 aaKnown RBP23.25■■□□□ 1.31
COMMD4-212ENST00000565517 SLC52A1Q9NWF4 448 aa23.23■■□□□ 1.31
COMMD4-212ENST00000565517 PIK3C2BO00750 1634 aa23.22■■□□□ 1.31
COMMD4-212ENST00000565517 ANKLE2Q86XL3 938 aa23.22■■□□□ 1.31
COMMD4-212ENST00000565517 IDI1Q13907 227 aa23.21■■□□□ 1.31
COMMD4-212ENST00000565517 NEURL4Q96JN8 1562 aa23.18■■□□□ 1.3
COMMD4-212ENST00000565517 SLIT1O75093 1534 aa23.17■■□□□ 1.3
COMMD4-212ENST00000565517 MED14O60244 1454 aa23.17■■□□□ 1.3
COMMD4-212ENST00000565517 STAG3Q9UJ98 1225 aa23.16■■□□□ 1.3
COMMD4-212ENST00000565517 ARHGAP23Q9P227 1491 aa23.16■■□□□ 1.3
COMMD4-212ENST00000565517 ADGRB3O60242 1522 aa23.13■■□□□ 1.29
COMMD4-212ENST00000565517 ACIN1Q9UKV3 1341 aaKnown RBP23.12■■□□□ 1.29
COMMD4-212ENST00000565517 TRIM52Q96A61 297 aa23.12■■□□□ 1.29
COMMD4-212ENST00000565517 SPHKAPQ2M3C7 1700 aa23.11■■□□□ 1.29
COMMD4-212ENST00000565517 NPHP4O75161 1426 aaPredicted RBP23.11■■□□□ 1.29
COMMD4-212ENST00000565517 TMEM2Q9UHN6 1383 aa23.11■■□□□ 1.29
COMMD4-212ENST00000565517 IQGAP1P46940 1657 aa23.1■■□□□ 1.29
COMMD4-212ENST00000565517 CERKQ8TCT0 537 aa23.1■■□□□ 1.29
COMMD4-212ENST00000565517 SCAF11Q99590 1463 aaKnown RBP23.1■■□□□ 1.29
COMMD4-212ENST00000565517 MYO5BQ9ULV0 1848 aa23.1■■□□□ 1.29
COMMD4-212ENST00000565517 LTBP4Q8N2S1 1624 aa23.09■■□□□ 1.29
COMMD4-212ENST00000565517 TXNDC2Q86VQ3 553 aa23.09■■□□□ 1.29
COMMD4-212ENST00000565517 EID1Q9Y6B2 187 aa23.09■■□□□ 1.29
COMMD4-212ENST00000565517 TMEM131LA2VDJ0 1609 aa23.08■■□□□ 1.29
COMMD4-212ENST00000565517 LTKP29376 864 aa23.08■■□□□ 1.29
COMMD4-212ENST00000565517 SETD5Q9C0A6 1442 aa23.08■■□□□ 1.28
COMMD4-212ENST00000565517 SLC4A1APQ9BWU0 796 aaKnown RBP23.05■■□□□ 1.28
COMMD4-212ENST00000565517 ZNF335Q9H4Z2 1342 aaPredicted RBP23.04■■□□□ 1.28
COMMD4-212ENST00000565517 HDGFP51858 240 aaKnown RBP23.02■■□□□ 1.28
COMMD4-212ENST00000565517 FBXO41Q8TF61 875 aa23.02■■□□□ 1.28
COMMD4-212ENST00000565517 TRPM2O94759 1503 aa23.02■■□□□ 1.28
COMMD4-212ENST00000565517 ILDR1Q86SU0 546 aaPredicted RBP23■■□□□ 1.27
COMMD4-212ENST00000565517 ZFYVE9O95405 1425 aa22.99■■□□□ 1.27
COMMD4-212ENST00000565517 IQSEC2Q5JU85 1478 aa22.99■■□□□ 1.27
COMMD4-212ENST00000565517 CHGAP10645 457 aaKnown RBP22.99■■□□□ 1.27
COMMD4-212ENST00000565517 MPHOSPH9Q99550 1183 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms