RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 RRBP1Q9P2E9 1410 aaKnown RBP39.59■■■■□ 3.93
NME3-208ENST00000565379 PPP6R1Q9UPN7 881 aa39.57■■■■□ 3.93
NME3-208ENST00000565379 PTPRTO14522 1441 aa39.57■■■■□ 3.92
NME3-208ENST00000565379 FAM50AQ14320 339 aaKnown RBP39.55■■■■□ 3.92
NME3-208ENST00000565379 MYO3AQ8NEV4 1616 aa39.54■■■■□ 3.92
NME3-208ENST00000565379 ABCC5O15440 1437 aa39.53■■■■□ 3.92
NME3-208ENST00000565379 KDM5DQ9BY66 1539 aa39.52■■■■□ 3.92
NME3-208ENST00000565379 NCOA1Q15788 1441 aa39.48■■■■□ 3.91
NME3-208ENST00000565379 CROCC2H7BZ55 1655 aa39.48■■■■□ 3.91
NME3-208ENST00000565379 FBXO31Q5XUX0 539 aaPredicted RBP39.48■■■■□ 3.91
NME3-208ENST00000565379 CAMSAP1Q5T5Y3 1602 aa39.47■■■■□ 3.91
NME3-208ENST00000565379 WASHC2CQ9Y4E1 1318 aa39.45■■■■□ 3.91
NME3-208ENST00000565379 RNF17Q9BXT8 1623 aaKnown RBP39.45■■■■□ 3.91
NME3-208ENST00000565379 ZNF142P52746 1687 aaPredicted RBP39.45■■■■□ 3.91
NME3-208ENST00000565379 DAPK1P53355 1430 aa39.44■■■■□ 3.9
NME3-208ENST00000565379 CEP170BQ9Y4F5 1589 aaPredicted RBP39.44■■■■□ 3.9
NME3-208ENST00000565379 DNMT1P26358 1616 aaKnown RBP39.43■■■■□ 3.9
NME3-208ENST00000565379 SHANK2Q9UPX8 1470 aa39.43■■■■□ 3.9
NME3-208ENST00000565379 MROH1Q8NDA8 1641 aa39.42■■■■□ 3.9
NME3-208ENST00000565379 FAM135AQ9P2D6 1515 aa39.41■■■■□ 3.9
NME3-208ENST00000565379 PZPP20742 1482 aa39.41■■■■□ 3.9
NME3-208ENST00000565379 KIF15Q9NS87 1388 aa39.39■■■■□ 3.9
NME3-208ENST00000565379 EIF2AK4Q9P2K8 1649 aaKnown RBP39.39■■■■□ 3.9
NME3-208ENST00000565379 RRP7BPQ9NSQ0 103 aa39.38■■■■□ 3.89
NME3-208ENST00000565379 DUOX2Q9NRD8 1548 aa39.38■■■■□ 3.89
NME3-208ENST00000565379 ABCC3O15438 1527 aa39.37■■■■□ 3.89
NME3-208ENST00000565379 NCKAP5LQ9HCH0 1330 aa39.37■■■■□ 3.89
NME3-208ENST00000565379 TNRQ92752 1358 aa39.36■■■■□ 3.89
NME3-208ENST00000565379 CHIC2Q9UKJ5 165 aa39.34■■■■□ 3.89
NME3-208ENST00000565379 A2ML1A8K2U0 1454 aa39.32■■■■□ 3.89
NME3-208ENST00000565379 CEP152O94986 1710 aa39.28■■■■□ 3.88
NME3-208ENST00000565379 LTBP4Q8N2S1 1624 aa39.27■■■■□ 3.88
NME3-208ENST00000565379 PKD2Q13563 968 aa39.26■■■■□ 3.88
NME3-208ENST00000565379 PLA2R1Q13018 1463 aa39.25■■■■□ 3.87
NME3-208ENST00000565379 ZC3H13Q5T200 1668 aaKnown RBP39.25■■■■□ 3.87
NME3-208ENST00000565379 ERBINQ96RT1 1412 aa39.23■■■■□ 3.87
NME3-208ENST00000565379 ANKRD30AQ9BXX3 1397 aa39.21■■■■□ 3.87
NME3-208ENST00000565379 PRDM15P57071 1507 aaPredicted RBP39.19■■■■□ 3.86
NME3-208ENST00000565379 ADGRL2O95490 1459 aa39.19■■■■□ 3.86
NME3-208ENST00000565379 IQSEC2Q5JU85 1478 aa39.18■■■■□ 3.86
NME3-208ENST00000565379 ITGAEP38570 1179 aa39.18■■■■□ 3.86
NME3-208ENST00000565379 ROCK1Q13464 1354 aa39.18■■■■□ 3.86
NME3-208ENST00000565379 ERVK-7P63135 1459 aa39.17■■■■□ 3.86
NME3-208ENST00000565379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP39.16■■■■□ 3.86
NME3-208ENST00000565379 SPATA31D1Q6ZQQ2 1576 aa39.16■■■■□ 3.86
NME3-208ENST00000565379 CFAP65Q6ZU64 1925 aaKnown RBP39.14■■■■□ 3.86
NME3-208ENST00000565379 DEPDC5O75140 1603 aa39.13■■■■□ 3.85
NME3-208ENST00000565379 NLRP1Q9C000 1473 aa39.11■■■■□ 3.85
NME3-208ENST00000565379 ZNF335Q9H4Z2 1342 aaPredicted RBP39.1■■■■□ 3.85
NME3-208ENST00000565379 NEURL4Q96JN8 1562 aa39.08■■■■□ 3.85
NME3-208ENST00000565379 UGGT1Q9NYU2 1555 aa39.07■■■■□ 3.84
NME3-208ENST00000565379 POLR1AO95602 1720 aaPredicted RBP39.03■■■■□ 3.84
NME3-208ENST00000565379 VWDEQ8N2E2 1590 aa39■■■■□ 3.83
NME3-208ENST00000565379 ARHGAP31Q2M1Z3 1444 aa39■■■■□ 3.83
NME3-208ENST00000565379 TRIM26Q12899 539 aaPredicted RBP38.98■■■■□ 3.83
NME3-208ENST00000565379 THEMISQ8N1K5 641 aaPredicted RBP38.97■■■■□ 3.83
NME3-208ENST00000565379 KANK1Q14678 1352 aa38.96■■■■□ 3.83
NME3-208ENST00000565379 ANKRD50Q9ULJ7 1429 aa38.95■■■■□ 3.83
NME3-208ENST00000565379 DISP3Q9P2K9 1392 aa38.95■■■■□ 3.83
NME3-208ENST00000565379 LMTK2Q8IWU2 1503 aa38.94■■■■□ 3.82
NME3-208ENST00000565379 ANKLE2Q86XL3 938 aa38.92■■■■□ 3.82
NME3-208ENST00000565379 HFM1A2PYH4 1435 aa38.91■■■■□ 3.82
NME3-208ENST00000565379 UBAP1LF5GYI3 381 aa38.91■■■■□ 3.82
NME3-208ENST00000565379 UBR1Q8IWV7 1749 aa38.9■■■■□ 3.82
NME3-208ENST00000565379 NPHP4O75161 1426 aaPredicted RBP38.86■■■■□ 3.81
NME3-208ENST00000565379 EFCAB6Q5THR3 1501 aa38.85■■■■□ 3.81
NME3-208ENST00000565379 NAIPQ13075 1403 aa38.85■■■■□ 3.81
NME3-208ENST00000565379 MED14O60244 1454 aa38.83■■■■□ 3.81
NME3-208ENST00000565379 SYNMO15061 1565 aa38.82■■■■□ 3.81
NME3-208ENST00000565379 PIK3C2BO00750 1634 aa38.82■■■■□ 3.81
NME3-208ENST00000565379 GCC2Q8IWJ2 1684 aa38.8■■■■□ 3.8
NME3-208ENST00000565379 IQGAP1P46940 1657 aa38.78■■■■□ 3.8
NME3-208ENST00000565379 NOS1P29475 1434 aa38.76■■■■□ 3.8
NME3-208ENST00000565379 ILDR2Q71H61 639 aa38.76■■■■□ 3.8
NME3-208ENST00000565379 ACIN1Q9UKV3 1341 aaKnown RBP38.75■■■■□ 3.79
NME3-208ENST00000565379 UNC13BO14795 1591 aa38.74■■■■□ 3.79
NME3-208ENST00000565379 ARHGAP23Q9P227 1491 aa38.74■■■■□ 3.79
NME3-208ENST00000565379 LTKP29376 864 aa38.74■■■■□ 3.79
NME3-208ENST00000565379 IDI1Q13907 227 aa38.74■■■■□ 3.79
NME3-208ENST00000565379 SLIT1O75093 1534 aa38.72■■■■□ 3.79
NME3-208ENST00000565379 CPS1P31327 1500 aa38.72■■■■□ 3.79
NME3-208ENST00000565379 SCAF11Q99590 1463 aaKnown RBP38.72■■■■□ 3.79
NME3-208ENST00000565379 SETD5Q9C0A6 1442 aa38.72■■■■□ 3.79
NME3-208ENST00000565379 TET3O43151 1660 aa38.69■■■■□ 3.78
NME3-208ENST00000565379 TXNDC2Q86VQ3 553 aa38.66■■■■□ 3.78
NME3-208ENST00000565379 TOM1O60784 492 aa38.65■■■■□ 3.78
NME3-208ENST00000565379 STRCP1A6NGW2 1772 aa38.65■■■■□ 3.78
NME3-208ENST00000565379 STAG3Q9UJ98 1225 aa38.64■■■■□ 3.78
NME3-208ENST00000565379 TMEM2Q9UHN6 1383 aa38.64■■■■□ 3.78
NME3-208ENST00000565379 RPRD2Q5VT52 1461 aaKnown RBP38.61■■■■□ 3.77
NME3-208ENST00000565379 HRCP23327 699 aa38.61■■■■□ 3.77
NME3-208ENST00000565379 ADGRB3O60242 1522 aa38.6■■■■□ 3.77
NME3-208ENST00000565379 SOCS7O14512 581 aa38.6■■■■□ 3.77
NME3-208ENST00000565379 IQGAP3Q86VI3 1631 aa38.58■■■■□ 3.77
NME3-208ENST00000565379 E9PCH4 1651 aa38.58■■■■□ 3.77
NME3-208ENST00000565379 KDM5AP29375 1690 aaKnown RBP38.56■■■■□ 3.76
NME3-208ENST00000565379 PIP4K2BP78356 416 aa38.56■■■■□ 3.76
NME3-208ENST00000565379 SCAF1Q9H7N4 1312 aaKnown RBP38.56■■■■□ 3.76
NME3-208ENST00000565379 NUP155O75694 1391 aa38.55■■■■□ 3.76
NME3-208ENST00000565379 RAB3GAP2Q9H2M9 1393 aa38.55■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms