RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RNF17Q9BXT8 1623 aaKnown RBP23.28■■□□□ 1.32
CLN3-213ENST00000565047 SHANK2Q9UPX8 1470 aa23.28■■□□□ 1.32
CLN3-213ENST00000565047 DMRT2Q9Y5R5 561 aa23.26■■□□□ 1.31
CLN3-213ENST00000565047 MYO3AQ8NEV4 1616 aa23.26■■□□□ 1.31
CLN3-213ENST00000565047 PTPRTO14522 1441 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 PZPP20742 1482 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 FBXO31Q5XUX0 539 aaPredicted RBP23.25■■□□□ 1.31
CLN3-213ENST00000565047 FBXO41Q8TF61 875 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 WASHC2CQ9Y4E1 1318 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 EIF2AK4Q9P2K8 1649 aaKnown RBP23.25■■□□□ 1.31
CLN3-213ENST00000565047 CROCC2H7BZ55 1655 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 ZNF142P52746 1687 aaPredicted RBP23.25■■□□□ 1.31
CLN3-213ENST00000565047 DAPK1P53355 1430 aa23.25■■□□□ 1.31
CLN3-213ENST00000565047 DNMT1P26358 1616 aaKnown RBP23.24■■□□□ 1.31
CLN3-213ENST00000565047 MROH1Q8NDA8 1641 aa23.24■■□□□ 1.31
CLN3-213ENST00000565047 DUOX2Q9NRD8 1548 aa23.23■■□□□ 1.31
CLN3-213ENST00000565047 CAMSAP1Q5T5Y3 1602 aa23.22■■□□□ 1.31
CLN3-213ENST00000565047 CEP170BQ9Y4F5 1589 aaPredicted RBP23.22■■□□□ 1.31
CLN3-213ENST00000565047 ABCC3O15438 1527 aa23.2■■□□□ 1.3
CLN3-213ENST00000565047 KIF15Q9NS87 1388 aa23.2■■□□□ 1.3
CLN3-213ENST00000565047 PLA2R1Q13018 1463 aa23.19■■□□□ 1.3
CLN3-213ENST00000565047 A2ML1A8K2U0 1454 aa23.18■■□□□ 1.3
CLN3-213ENST00000565047 CERKQ8TCT0 537 aa23.18■■□□□ 1.3
CLN3-213ENST00000565047 TNRQ92752 1358 aa23.17■■□□□ 1.3
CLN3-213ENST00000565047 RRP7BPQ9NSQ0 103 aa23.17■■□□□ 1.3
CLN3-213ENST00000565047 ERBINQ96RT1 1412 aa23.16■■□□□ 1.3
CLN3-213ENST00000565047 NCKAP5LQ9HCH0 1330 aa23.15■■□□□ 1.3
CLN3-213ENST00000565047 ZC3H13Q5T200 1668 aaKnown RBP23.15■■□□□ 1.3
CLN3-213ENST00000565047 PRDM15P57071 1507 aaPredicted RBP23.13■■□□□ 1.29
CLN3-213ENST00000565047 LTBP4Q8N2S1 1624 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 ADGRL2O95490 1459 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 SPATA31D1Q6ZQQ2 1576 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 PKD2Q13563 968 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 CHIC2Q9UKJ5 165 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 ANKRD30AQ9BXX3 1397 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 DEPDC5O75140 1603 aa23.11■■□□□ 1.29
CLN3-213ENST00000565047 NLRP1Q9C000 1473 aa23.1■■□□□ 1.29
CLN3-213ENST00000565047 ARHGAP31Q2M1Z3 1444 aa23.08■■□□□ 1.28
CLN3-213ENST00000565047 ERVK-7P63135 1459 aa23.07■■□□□ 1.28
CLN3-213ENST00000565047 CEP152O94986 1710 aa23.07■■□□□ 1.28
CLN3-213ENST00000565047 VWDEQ8N2E2 1590 aa23.06■■□□□ 1.28
CLN3-213ENST00000565047 FAM50AQ14320 339 aaKnown RBP23.05■■□□□ 1.28
CLN3-213ENST00000565047 LMTK2Q8IWU2 1503 aa23.03■■□□□ 1.28
CLN3-213ENST00000565047 NEURL4Q96JN8 1562 aa23.02■■□□□ 1.28
CLN3-213ENST00000565047 UGGT1Q9NYU2 1555 aa23.01■■□□□ 1.27
CLN3-213ENST00000565047 THEMISQ8N1K5 641 aaPredicted RBP23.01■■□□□ 1.27
CLN3-213ENST00000565047 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.01■■□□□ 1.27
CLN3-213ENST00000565047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.99■■□□□ 1.27
CLN3-213ENST00000565047 ZNF335Q9H4Z2 1342 aaPredicted RBP22.99■■□□□ 1.27
CLN3-213ENST00000565047 ANKRD50Q9ULJ7 1429 aa22.97■■□□□ 1.27
CLN3-213ENST00000565047 MED14O60244 1454 aa22.97■■□□□ 1.27
CLN3-213ENST00000565047 IQSEC2Q5JU85 1478 aa22.96■■□□□ 1.27
CLN3-213ENST00000565047 POLR1AO95602 1720 aaPredicted RBP22.96■■□□□ 1.27
CLN3-213ENST00000565047 ANKLE2Q86XL3 938 aa22.95■■□□□ 1.26
CLN3-213ENST00000565047 PPARGC1BQ86YN6 1023 aaKnown RBP22.95■■□□□ 1.26
CLN3-213ENST00000565047 ROCK1Q13464 1354 aa22.94■■□□□ 1.26
CLN3-213ENST00000565047 KANK1Q14678 1352 aa22.94■■□□□ 1.26
CLN3-213ENST00000565047 CFAP65Q6ZU64 1925 aaKnown RBP22.94■■□□□ 1.26
CLN3-213ENST00000565047 UBR1Q8IWV7 1749 aa22.92■■□□□ 1.26
CLN3-213ENST00000565047 EFCAB6Q5THR3 1501 aa22.9■■□□□ 1.26
CLN3-213ENST00000565047 ARHGAP23Q9P227 1491 aa22.9■■□□□ 1.26
CLN3-213ENST00000565047 NOS1P29475 1434 aa22.9■■□□□ 1.26
CLN3-213ENST00000565047 NPHP4O75161 1426 aaPredicted RBP22.88■■□□□ 1.25
CLN3-213ENST00000565047 SLIT1O75093 1534 aa22.87■■□□□ 1.25
CLN3-213ENST00000565047 SYNMO15061 1565 aa22.87■■□□□ 1.25
CLN3-213ENST00000565047 IDI1Q13907 227 aa22.86■■□□□ 1.25
CLN3-213ENST00000565047 UNC13BO14795 1591 aa22.85■■□□□ 1.25
CLN3-213ENST00000565047 LTKP29376 864 aa22.85■■□□□ 1.25
CLN3-213ENST00000565047 PIK3C2BO00750 1634 aa22.85■■□□□ 1.25
CLN3-213ENST00000565047 RRBP1Q9P2E9 1410 aaKnown RBP22.84■■□□□ 1.25
CLN3-213ENST00000565047 RPRD2Q5VT52 1461 aaKnown RBP22.83■■□□□ 1.25
CLN3-213ENST00000565047 IQGAP1P46940 1657 aa22.83■■□□□ 1.24
CLN3-213ENST00000565047 KDM5AP29375 1690 aaKnown RBP22.82■■□□□ 1.24
CLN3-213ENST00000565047 TET3O43151 1660 aa22.81■■□□□ 1.24
CLN3-213ENST00000565047 SCAF11Q99590 1463 aaKnown RBP22.8■■□□□ 1.24
CLN3-213ENST00000565047 TMEM2Q9UHN6 1383 aa22.8■■□□□ 1.24
CLN3-213ENST00000565047 CPS1P31327 1500 aa22.79■■□□□ 1.24
CLN3-213ENST00000565047 ITGAEP38570 1179 aa22.78■■□□□ 1.24
CLN3-213ENST00000565047 TXNDC2Q86VQ3 553 aa22.78■■□□□ 1.24
CLN3-213ENST00000565047 SLC52A1Q9NWF4 448 aa22.78■■□□□ 1.24
CLN3-213ENST00000565047 IQGAP3Q86VI3 1631 aa22.75■■□□□ 1.23
CLN3-213ENST00000565047 GCC2Q8IWJ2 1684 aa22.75■■□□□ 1.23
CLN3-213ENST00000565047 STRCP1A6NGW2 1772 aa22.75■■□□□ 1.23
CLN3-213ENST00000565047 ADGRB3O60242 1522 aa22.73■■□□□ 1.23
CLN3-213ENST00000565047 E9PCH4 1651 aa22.73■■□□□ 1.23
CLN3-213ENST00000565047 EID1Q9Y6B2 187 aa22.71■■□□□ 1.23
CLN3-213ENST00000565047 NUP155O75694 1391 aa22.71■■□□□ 1.23
CLN3-213ENST00000565047 UBAP1LF5GYI3 381 aa22.7■■□□□ 1.22
CLN3-213ENST00000565047 STAG3Q9UJ98 1225 aa22.69■■□□□ 1.22
CLN3-213ENST00000565047 LRRC7Q96NW7 1537 aa22.68■■□□□ 1.22
CLN3-213ENST00000565047 NAIPQ13075 1403 aa22.68■■□□□ 1.22
CLN3-213ENST00000565047 ALKQ9UM73 1620 aa22.68■■□□□ 1.22
CLN3-213ENST00000565047 ZFYVE9O95405 1425 aa22.67■■□□□ 1.22
CLN3-213ENST00000565047 TMEM131LA2VDJ0 1609 aa22.67■■□□□ 1.22
CLN3-213ENST00000565047 MYO5BQ9ULV0 1848 aa22.61■■□□□ 1.21
CLN3-213ENST00000565047 HFM1A2PYH4 1435 aa22.6■■□□□ 1.21
CLN3-213ENST00000565047 RIMS2Q9UQ26 1411 aa22.59■■□□□ 1.21
CLN3-213ENST00000565047 TOM1O60784 492 aa22.59■■□□□ 1.21
CLN3-213ENST00000565047 SLC26A8Q96RN1 970 aa22.59■■□□□ 1.21
CLN3-213ENST00000565047 PLEKHG1Q9ULL1 1385 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms