RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RAB3GAP2Q9H2M9 1393 aa30.8■■■□□ 2.52
CLN3-212ENST00000564574 HRCP23327 699 aa30.8■■■□□ 2.52
CLN3-212ENST00000564574 UNC13BO14795 1591 aa30.79■■■□□ 2.52
CLN3-212ENST00000564574 KIF3BO15066 747 aa30.78■■■□□ 2.52
CLN3-212ENST00000564574 PRDM15P57071 1507 aaPredicted RBP30.74■■■□□ 2.51
CLN3-212ENST00000564574 MROH1Q8NDA8 1641 aa30.73■■■□□ 2.51
CLN3-212ENST00000564574 ARID4BQ4LE39 1312 aaPredicted RBP30.73■■■□□ 2.51
CLN3-212ENST00000564574 FAM135AQ9P2D6 1515 aa30.7■■■□□ 2.51
CLN3-212ENST00000564574 KDM5DQ9BY66 1539 aa30.69■■■□□ 2.5
CLN3-212ENST00000564574 PPP6R1Q9UPN7 881 aa30.67■■■□□ 2.5
CLN3-212ENST00000564574 ZC3H13Q5T200 1668 aaKnown RBP30.67■■■□□ 2.5
CLN3-212ENST00000564574 KANK1Q14678 1352 aa30.66■■■□□ 2.5
CLN3-212ENST00000564574 VWDEQ8N2E2 1590 aa30.66■■■□□ 2.5
CLN3-212ENST00000564574 IQGAP3Q86VI3 1631 aa30.66■■■□□ 2.5
CLN3-212ENST00000564574 GGT6Q6P531 493 aa30.66■■■□□ 2.5
CLN3-212ENST00000564574 NUP155O75694 1391 aa30.63■■■□□ 2.49
CLN3-212ENST00000564574 TRIM52Q96A61 297 aa30.62■■■□□ 2.49
CLN3-212ENST00000564574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.61■■■□□ 2.49
CLN3-212ENST00000564574 CEP152O94986 1710 aa30.6■■■□□ 2.49
CLN3-212ENST00000564574 LMTK2Q8IWU2 1503 aa30.6■■■□□ 2.49
CLN3-212ENST00000564574 MLECQ14165 292 aa30.59■■■□□ 2.49
CLN3-212ENST00000564574 FER1L4A9Z1Z3 1794 aa30.58■■■□□ 2.49
CLN3-212ENST00000564574 ABCC3O15438 1527 aa30.57■■■□□ 2.49
CLN3-212ENST00000564574 ADAMTSL3P82987 1691 aa30.57■■■□□ 2.48
CLN3-212ENST00000564574 TET3O43151 1660 aa30.56■■■□□ 2.48
CLN3-212ENST00000564574 CLTCQ00610 1675 aaKnown RBP30.55■■■□□ 2.48
CLN3-212ENST00000564574 PZPP20742 1482 aa30.55■■■□□ 2.48
CLN3-212ENST00000564574 CNTLNQ9NXG0 1405 aa30.55■■■□□ 2.48
CLN3-212ENST00000564574 WASHC2CQ9Y4E1 1318 aa30.54■■■□□ 2.48
CLN3-212ENST00000564574 MROH2AA6NES4 1674 aa30.53■■■□□ 2.48
CLN3-212ENST00000564574 CAMSAP1Q5T5Y3 1602 aa30.53■■■□□ 2.48
CLN3-212ENST00000564574 ESF1Q9H501 851 aaKnown RBP30.52■■■□□ 2.48
CLN3-212ENST00000564574 MADDQ8WXG6 1647 aa30.5■■■□□ 2.47
CLN3-212ENST00000564574 EFCAB6Q5THR3 1501 aa30.49■■■□□ 2.47
CLN3-212ENST00000564574 MPHOSPH9Q99550 1183 aa30.47■■■□□ 2.47
CLN3-212ENST00000564574 SLC4A1APQ9BWU0 796 aaKnown RBP30.47■■■□□ 2.47
CLN3-212ENST00000564574 ARHGAP31Q2M1Z3 1444 aa30.45■■■□□ 2.46
CLN3-212ENST00000564574 E9PCH4 1651 aa30.45■■■□□ 2.46
CLN3-212ENST00000564574 RIMS1Q86UR5 1692 aaKnown RBP30.45■■■□□ 2.46
CLN3-212ENST00000564574 RPRD2Q5VT52 1461 aaKnown RBP30.42■■■□□ 2.46
CLN3-212ENST00000564574 DHX57Q6P158 1386 aaKnown RBP30.4■■■□□ 2.46
CLN3-212ENST00000564574 PKD2Q13563 968 aa30.38■■■□□ 2.45
CLN3-212ENST00000564574 ZMYM3Q14202 1370 aa30.38■■■□□ 2.45
CLN3-212ENST00000564574 C3P01024 1663 aa30.37■■■□□ 2.45
CLN3-212ENST00000564574 NPATQ14207 1427 aa30.37■■■□□ 2.45
CLN3-212ENST00000564574 PREX1Q8TCU6 1659 aa30.33■■■□□ 2.45
CLN3-212ENST00000564574 CFAP65Q6ZU64 1925 aaKnown RBP30.33■■■□□ 2.45
CLN3-212ENST00000564574 SPHKAPQ2M3C7 1700 aa30.33■■■□□ 2.45
CLN3-212ENST00000564574 SPATA31D1Q6ZQQ2 1576 aa30.28■■■□□ 2.44
CLN3-212ENST00000564574 PTPRMP28827 1452 aa30.27■■■□□ 2.44
CLN3-212ENST00000564574 ERVK-7P63135 1459 aa30.27■■■□□ 2.44
CLN3-212ENST00000564574 PTPRTO14522 1441 aa30.27■■■□□ 2.44
CLN3-212ENST00000564574 NOS1P29475 1434 aa30.26■■■□□ 2.43
CLN3-212ENST00000564574 TRPM2O94759 1503 aa30.24■■■□□ 2.43
CLN3-212ENST00000564574 FOXD1Q16676 465 aa30.24■■■□□ 2.43
CLN3-212ENST00000564574 ANKRD30BQ9BXX2 1392 aa30.21■■■□□ 2.43
CLN3-212ENST00000564574 CLSPNQ9HAW4 1339 aa30.2■■■□□ 2.42
CLN3-212ENST00000564574 SYNMO15061 1565 aa30.2■■■□□ 2.42
CLN3-212ENST00000564574 PLA2R1Q13018 1463 aa30.19■■■□□ 2.42
CLN3-212ENST00000564574 CEBPAP49715 358 aaPredicted RBP30.19■■■□□ 2.42
CLN3-212ENST00000564574 FBXO31Q5XUX0 539 aaPredicted RBP30.19■■■□□ 2.42
CLN3-212ENST00000564574 CCER1Q8TC90 406 aaPredicted RBP30.17■■■□□ 2.42
CLN3-212ENST00000564574 SETD1BQ9UPS6 1966 aaKnown RBP30.17■■■□□ 2.42
CLN3-212ENST00000564574 PIK3C2BO00750 1634 aa30.16■■■□□ 2.42
CLN3-212ENST00000564574 TNRQ92752 1358 aa30.15■■■□□ 2.42
CLN3-212ENST00000564574 CLTCL1P53675 1640 aa30.13■■■□□ 2.41
CLN3-212ENST00000564574 CCDC144AA2RUR9 1427 aa30.13■■■□□ 2.41
CLN3-212ENST00000564574 SLC52A1Q9NWF4 448 aa30.12■■■□□ 2.41
CLN3-212ENST00000564574 PLPPR3Q6T4P5 718 aa30.11■■■□□ 2.41
CLN3-212ENST00000564574 KIF1BO60333 1816 aa30.1■■■□□ 2.41
CLN3-212ENST00000564574 NLRP1Q9C000 1473 aa30.09■■■□□ 2.41
CLN3-212ENST00000564574 MYO3AQ8NEV4 1616 aa30.08■■■□□ 2.41
CLN3-212ENST00000564574 UGGT1Q9NYU2 1555 aa30.07■■■□□ 2.4
CLN3-212ENST00000564574 KDM5AP29375 1690 aaKnown RBP30.05■■■□□ 2.4
CLN3-212ENST00000564574 NEURL4Q96JN8 1562 aa30.03■■■□□ 2.4
CLN3-212ENST00000564574 ZNF142P52746 1687 aaPredicted RBP30.03■■■□□ 2.4
CLN3-212ENST00000564574 IDI1Q13907 227 aa30.02■■■□□ 2.4
CLN3-212ENST00000564574 ADGRB3O60242 1522 aa30■■■□□ 2.39
CLN3-212ENST00000564574 A2ML1A8K2U0 1454 aa29.99■■■□□ 2.39
CLN3-212ENST00000564574 TMEM131LA2VDJ0 1609 aa29.98■■■□□ 2.39
CLN3-212ENST00000564574 CEP170BQ9Y4F5 1589 aaPredicted RBP29.98■■■□□ 2.39
CLN3-212ENST00000564574 UBR1Q8IWV7 1749 aa29.97■■■□□ 2.39
CLN3-212ENST00000564574 SIN3AQ96ST3 1273 aa29.97■■■□□ 2.39
CLN3-212ENST00000564574 UHRF1BP1Q6BDS2 1440 aa29.96■■■□□ 2.39
CLN3-212ENST00000564574 MYO5BQ9ULV0 1848 aa29.96■■■□□ 2.39
CLN3-212ENST00000564574 SPATA31E1Q6ZUB1 1445 aa29.94■■■□□ 2.38
CLN3-212ENST00000564574 NEUROD1Q13562 356 aa29.92■■■□□ 2.38
CLN3-212ENST00000564574 STAG3Q9UJ98 1225 aa29.91■■■□□ 2.38
CLN3-212ENST00000564574 CHGAP10645 457 aaKnown RBP29.9■■■□□ 2.38
CLN3-212ENST00000564574 ILDR1Q86SU0 546 aaPredicted RBP29.85■■■□□ 2.37
CLN3-212ENST00000564574 TIMELESSQ9UNS1 1208 aa29.85■■■□□ 2.37
CLN3-212ENST00000564574 THEMISQ8N1K5 641 aaPredicted RBP29.84■■■□□ 2.37
CLN3-212ENST00000564574 TONSLQ96HA7 1378 aa29.84■■■□□ 2.37
CLN3-212ENST00000564574 IFT172Q9UG01 1749 aa29.84■■■□□ 2.37
CLN3-212ENST00000564574 PPLO60437 1756 aa29.83■■■□□ 2.37
CLN3-212ENST00000564574 RPGRIP1LQ68CZ1 1315 aa29.83■■■□□ 2.37
CLN3-212ENST00000564574 ZNF326Q5BKZ1 582 aaKnown RBP29.81■■■□□ 2.36
CLN3-212ENST00000564574 SLIT1O75093 1534 aa29.81■■■□□ 2.36
CLN3-212ENST00000564574 LMTK3Q96Q04 1460 aa29.8■■■□□ 2.36
CLN3-212ENST00000564574 RGL3Q3MIN7 710 aa29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms