RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SHANK2Q9UPX8 1470 aa11.94□□□□□ -0.5
VPS4A-203ENST00000564399 TNRQ92752 1358 aa11.92□□□□□ -0.5
VPS4A-203ENST00000564399 FBXO31Q5XUX0 539 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-203ENST00000564399 ANKLE2Q86XL3 938 aa11.92□□□□□ -0.5
VPS4A-203ENST00000564399 KIF3BO15066 747 aa11.91□□□□□ -0.5
VPS4A-203ENST00000564399 MTUS2Q5JR59 1369 aa11.91□□□□□ -0.5
VPS4A-203ENST00000564399 ZNF644Q9H582 1327 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-203ENST00000564399 THEMISQ8N1K5 641 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-203ENST00000564399 NEURL4Q96JN8 1562 aa11.9□□□□□ -0.5
VPS4A-203ENST00000564399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS4A-203ENST00000564399 DHX29Q7Z478 1369 aaKnown RBP11.89□□□□□ -0.51
VPS4A-203ENST00000564399 WASHC2CQ9Y4E1 1318 aa11.88□□□□□ -0.51
VPS4A-203ENST00000564399 NPHP4O75161 1426 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-203ENST00000564399 VWDEQ8N2E2 1590 aa11.87□□□□□ -0.51
VPS4A-203ENST00000564399 RTEL1-TNFRSF6BF6WH68 1400 aa11.86□□□□□ -0.51
VPS4A-203ENST00000564399 PZPP20742 1482 aa11.86□□□□□ -0.51
VPS4A-203ENST00000564399 KDM5DQ9BY66 1539 aa11.86□□□□□ -0.51
VPS4A-203ENST00000564399 FAM135AQ9P2D6 1515 aa11.86□□□□□ -0.51
VPS4A-203ENST00000564399 MIA2Q96PC5 1412 aa11.86□□□□□ -0.51
VPS4A-203ENST00000564399 UGGT1Q9NYU2 1555 aa11.85□□□□□ -0.51
VPS4A-203ENST00000564399 MBD5Q9P267 1494 aa11.85□□□□□ -0.51
VPS4A-203ENST00000564399 CFAP65Q6ZU64 1925 aaKnown RBP11.84□□□□□ -0.51
VPS4A-203ENST00000564399 TIAM1Q13009 1591 aa11.84□□□□□ -0.51
VPS4A-203ENST00000564399 NLRP1Q9C000 1473 aa11.83□□□□□ -0.52
VPS4A-203ENST00000564399 DEPDC5O75140 1603 aa11.83□□□□□ -0.52
VPS4A-203ENST00000564399 ALKQ9UM73 1620 aa11.83□□□□□ -0.52
VPS4A-203ENST00000564399 IQGAP1P46940 1657 aa11.83□□□□□ -0.52
VPS4A-203ENST00000564399 MED14O60244 1454 aa11.83□□□□□ -0.52
VPS4A-203ENST00000564399 STRCP1A6NGW2 1772 aa11.82□□□□□ -0.52
VPS4A-203ENST00000564399 CCDC141Q6ZP82 1450 aa11.81□□□□□ -0.52
VPS4A-203ENST00000564399 LRRC7Q96NW7 1537 aa11.81□□□□□ -0.52
VPS4A-203ENST00000564399 RSPH4AQ5TD94 716 aa11.8□□□□□ -0.52
VPS4A-203ENST00000564399 EHBP1L1Q8N3D4 1523 aa11.8□□□□□ -0.52
VPS4A-203ENST00000564399 RNF17Q9BXT8 1623 aaKnown RBP11.79□□□□□ -0.52
VPS4A-203ENST00000564399 TSPY4P0CV99 314 aa11.79□□□□□ -0.52
VPS4A-203ENST00000564399 TSPY10P0CW01 314 aa11.79□□□□□ -0.52
VPS4A-203ENST00000564399 RGS17Q9UGC6 210 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-203ENST00000564399 SYNMO15061 1565 aa11.78□□□□□ -0.52
VPS4A-203ENST00000564399 CEP162Q5TB80 1403 aa11.77□□□□□ -0.52
VPS4A-203ENST00000564399 CAMSAP2Q08AD1 1489 aa11.77□□□□□ -0.52
VPS4A-203ENST00000564399 TXNDC2Q86VQ3 553 aa11.74□□□□□ -0.53
VPS4A-203ENST00000564399 ZC3H13Q5T200 1668 aaKnown RBP11.74□□□□□ -0.53
VPS4A-203ENST00000564399 ABCC3O15438 1527 aa11.73□□□□□ -0.53
VPS4A-203ENST00000564399 ERVK-7P63135 1459 aa11.73□□□□□ -0.53
VPS4A-203ENST00000564399 NCOA2Q15596 1464 aa11.73□□□□□ -0.53
VPS4A-203ENST00000564399 SCAF11Q99590 1463 aaKnown RBP11.73□□□□□ -0.53
VPS4A-203ENST00000564399 XIRP1Q702N8 1843 aaKnown RBP11.72□□□□□ -0.53
VPS4A-203ENST00000564399 UBR1Q8IWV7 1749 aa11.72□□□□□ -0.53
VPS4A-203ENST00000564399 LTKP29376 864 aa11.72□□□□□ -0.53
VPS4A-203ENST00000564399 POTEAQ6S8J7 498 aa11.72□□□□□ -0.53
VPS4A-203ENST00000564399 EID1Q9Y6B2 187 aa11.72□□□□□ -0.53
VPS4A-203ENST00000564399 ARHGEF5Q12774 1597 aa11.71□□□□□ -0.53
VPS4A-203ENST00000564399 CEP152O94986 1710 aa11.71□□□□□ -0.54
VPS4A-203ENST00000564399 STAG3Q9UJ98 1225 aa11.7□□□□□ -0.54
VPS4A-203ENST00000564399 FAM135BQ49AJ0 1406 aa11.69□□□□□ -0.54
VPS4A-203ENST00000564399 EIF2AK4Q9P2K8 1649 aaKnown RBP11.68□□□□□ -0.54
VPS4A-203ENST00000564399 SLIT1O75093 1534 aa11.67□□□□□ -0.54
VPS4A-203ENST00000564399 PROSER2Q86WR7 435 aaPredicted RBP11.67□□□□□ -0.54
VPS4A-203ENST00000564399 ARHGAP23Q9P227 1491 aa11.67□□□□□ -0.54
VPS4A-203ENST00000564399 TMEM94Q12767 1356 aa11.67□□□□□ -0.54
VPS4A-203ENST00000564399 RBM33Q96EV2 1170 aaKnown RBP11.66□□□□□ -0.54
VPS4A-203ENST00000564399 MROH1Q8NDA8 1641 aa11.66□□□□□ -0.54
VPS4A-203ENST00000564399 MAST1Q9Y2H9 1570 aa11.66□□□□□ -0.54
VPS4A-203ENST00000564399 ROBO1Q9Y6N7 1651 aa11.65□□□□□ -0.54
VPS4A-203ENST00000564399 KCNA6P17658 529 aa11.65□□□□□ -0.54
VPS4A-203ENST00000564399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.65□□□□□ -0.54
VPS4A-203ENST00000564399 SETD1AO15047 1707 aaKnown RBP11.64□□□□□ -0.55
VPS4A-203ENST00000564399 SLC26A8Q96RN1 970 aa11.64□□□□□ -0.55
VPS4A-203ENST00000564399 TMEM2Q9UHN6 1383 aa11.64□□□□□ -0.55
VPS4A-203ENST00000564399 BCANQ96GW7 911 aa11.63□□□□□ -0.55
VPS4A-203ENST00000564399 DUOX2Q9NRD8 1548 aa11.63□□□□□ -0.55
VPS4A-203ENST00000564399 PIK3C2BO00750 1634 aa11.63□□□□□ -0.55
VPS4A-203ENST00000564399 ARHGAP31Q2M1Z3 1444 aa11.62□□□□□ -0.55
VPS4A-203ENST00000564399 LRRC9Q6ZRR7 1453 aa11.61□□□□□ -0.55
VPS4A-203ENST00000564399 PHLPP1O60346 1717 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 MSH6P52701 1360 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 KANK1Q14678 1352 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 KIF15Q9NS87 1388 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 IDI1Q13907 227 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 RRP7BPQ9NSQ0 103 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 SLAIN2Q9P270 581 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 EFCAB6Q5THR3 1501 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 MYOM3Q5VTT5 1437 aa11.6□□□□□ -0.55
VPS4A-203ENST00000564399 JCADQ9P266 1359 aa11.59□□□□□ -0.55
VPS4A-203ENST00000564399 MEX3CQ5U5Q3 659 aaKnown RBP11.59□□□□□ -0.55
VPS4A-203ENST00000564399 PRDM15P57071 1507 aaPredicted RBP11.59□□□□□ -0.55
VPS4A-203ENST00000564399 MAP3K1Q13233 1512 aa11.59□□□□□ -0.55
VPS4A-203ENST00000564399 TRIM52Q96A61 297 aa11.57□□□□□ -0.56
VPS4A-203ENST00000564399 ERBINQ96RT1 1412 aa11.57□□□□□ -0.56
VPS4A-203ENST00000564399 NKTRP30414 1462 aaKnown RBP11.57□□□□□ -0.56
VPS4A-203ENST00000564399 TET3O43151 1660 aa11.56□□□□□ -0.56
VPS4A-203ENST00000564399 KDM5AP29375 1690 aaKnown RBP11.56□□□□□ -0.56
VPS4A-203ENST00000564399 KANK4Q5T7N3 995 aaPredicted RBP11.56□□□□□ -0.56
VPS4A-203ENST00000564399 UPF1Q92900 1129 aaKnown RBP eCLIP11.56□□□□□ -0.563e-6■■□□□ 12
VPS4A-203ENST00000564399 ZNF772Q68DY9 489 aaPredicted RBP11.55□□□□□ -0.56
VPS4A-203ENST00000564399 C14orf37Q86TY3 774 aa11.55□□□□□ -0.56
VPS4A-203ENST00000564399 PPP1R15AO75807 674 aaPredicted RBP11.54□□□□□ -0.56
VPS4A-203ENST00000564399 NWD1Q149M9 1564 aa11.54□□□□□ -0.56
VPS4A-203ENST00000564399 VPS8Q8N3P4 1428 aa11.53□□□□□ -0.56
VPS4A-203ENST00000564399 SPATA31A6Q5VVP1 1343 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms