RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KIF3BO15066 747 aa30.7■■■□□ 2.5
CLN3-209ENST00000561689 MAGI2Q86UL8 1455 aa30.69■■■□□ 2.5
CLN3-209ENST00000561689 PPP1R15AO75807 674 aaPredicted RBP30.67■■■□□ 2.5
CLN3-209ENST00000561689 A2MP01023 1474 aa30.66■■■□□ 2.5
CLN3-209ENST00000561689 RICTORQ6R327 1708 aa30.65■■■□□ 2.5
CLN3-209ENST00000561689 DNAJC5Q9H3Z4 198 aa30.65■■■□□ 2.5
CLN3-209ENST00000561689 RPRD2Q5VT52 1461 aaKnown RBP30.64■■■□□ 2.49
CLN3-209ENST00000561689 IQGAP3Q86VI3 1631 aa30.63■■■□□ 2.49
CLN3-209ENST00000561689 FRMPD1Q5SYB0 1578 aa30.61■■■□□ 2.49
CLN3-209ENST00000561689 ZNF316A6NFI3 1004 aaPredicted RBP30.6■■■□□ 2.49
CLN3-209ENST00000561689 ABCA6Q8N139 1617 aa30.6■■■□□ 2.49
CLN3-209ENST00000561689 EIF2AK4Q9P2K8 1649 aaKnown RBP30.57■■■□□ 2.48
CLN3-209ENST00000561689 YEATS2Q9ULM3 1422 aa30.57■■■□□ 2.48
CLN3-209ENST00000561689 L3MBTL2Q969R5 705 aa30.57■■■□□ 2.48
CLN3-209ENST00000561689 DEPDC5O75140 1603 aa30.56■■■□□ 2.48
CLN3-209ENST00000561689 KANK1Q14678 1352 aa30.55■■■□□ 2.48
CLN3-209ENST00000561689 DIP2CQ9Y2E4 1556 aa30.54■■■□□ 2.48
CLN3-209ENST00000561689 COL17A1Q9UMD9 1497 aaPredicted RBP30.51■■■□□ 2.48
CLN3-209ENST00000561689 ZMYM4Q5VZL5 1548 aa30.51■■■□□ 2.47
CLN3-209ENST00000561689 MROH1Q8NDA8 1641 aa30.5■■■□□ 2.47
CLN3-209ENST00000561689 GGT6Q6P531 493 aa30.49■■■□□ 2.47
CLN3-209ENST00000561689 PRDM15P57071 1507 aaPredicted RBP30.49■■■□□ 2.47
CLN3-209ENST00000561689 PLA2R1Q13018 1463 aa30.49■■■□□ 2.47
CLN3-209ENST00000561689 VWDEQ8N2E2 1590 aa30.48■■■□□ 2.47
CLN3-209ENST00000561689 TRHP20396 242 aaPredicted RBP30.47■■■□□ 2.47
CLN3-209ENST00000561689 CCDC144AA2RUR9 1427 aa30.43■■■□□ 2.46
CLN3-209ENST00000561689 RNF17Q9BXT8 1623 aaKnown RBP30.43■■■□□ 2.46
CLN3-209ENST00000561689 E9PCH4 1651 aa30.39■■■□□ 2.46
CLN3-209ENST00000561689 TET3O43151 1660 aa30.39■■■□□ 2.46
CLN3-209ENST00000561689 ATP10AO60312 1499 aa30.39■■■□□ 2.45
CLN3-209ENST00000561689 BCORL1Q5H9F3 1711 aa30.37■■■□□ 2.45
CLN3-209ENST00000561689 WASHC2CQ9Y4E1 1318 aa30.35■■■□□ 2.45
CLN3-209ENST00000561689 NBPF8Q3BBV2 869 aa30.34■■■□□ 2.45
CLN3-209ENST00000561689 LMTK2Q8IWU2 1503 aa30.33■■■□□ 2.45
CLN3-209ENST00000561689 PTPRTO14522 1441 aa30.31■■■□□ 2.44
CLN3-209ENST00000561689 EFCAB6Q5THR3 1501 aa30.31■■■□□ 2.44
CLN3-209ENST00000561689 RGL3Q3MIN7 710 aa30.3■■■□□ 2.44
CLN3-209ENST00000561689 CEP152O94986 1710 aa30.29■■■□□ 2.44
CLN3-209ENST00000561689 ABCC3O15438 1527 aa30.28■■■□□ 2.44
CLN3-209ENST00000561689 DIEXFQ68CQ4 756 aaKnown RBP30.28■■■□□ 2.44
CLN3-209ENST00000561689 ZNF326Q5BKZ1 582 aaKnown RBP30.27■■■□□ 2.44
CLN3-209ENST00000561689 DCAF11Q8TEB1 546 aa30.27■■■□□ 2.44
CLN3-209ENST00000561689 TRPM2O94759 1503 aa30.27■■■□□ 2.44
CLN3-209ENST00000561689 KDM2AQ9Y2K7 1162 aa30.26■■■□□ 2.44
CLN3-209ENST00000561689 HIRIP3Q9BW71 556 aaPredicted RBP30.25■■■□□ 2.43
CLN3-209ENST00000561689 REREQ9P2R6 1566 aa30.24■■■□□ 2.43
CLN3-209ENST00000561689 ARHGEF40Q8TER5 1519 aa30.24■■■□□ 2.43
CLN3-209ENST00000561689 SPHKAPQ2M3C7 1700 aa30.23■■■□□ 2.43
CLN3-209ENST00000561689 NPATQ14207 1427 aa30.23■■■□□ 2.43
CLN3-209ENST00000561689 AGLP35573 1532 aa30.2■■■□□ 2.42
CLN3-209ENST00000561689 CLTCL1P53675 1640 aa30.17■■■□□ 2.42
CLN3-209ENST00000561689 SPATA31E1Q6ZUB1 1445 aa30.16■■■□□ 2.42
CLN3-209ENST00000561689 SIGLEC1Q9BZZ2 1709 aa30.16■■■□□ 2.42
CLN3-209ENST00000561689 UHRF1BP1Q6BDS2 1440 aa30.16■■■□□ 2.42
CLN3-209ENST00000561689 MLECQ14165 292 aa30.15■■■□□ 2.42
CLN3-209ENST00000561689 UGGT1Q9NYU2 1555 aa30.15■■■□□ 2.42
CLN3-209ENST00000561689 CAMSAP1Q5T5Y3 1602 aa30.14■■■□□ 2.42
CLN3-209ENST00000561689 ZC3H13Q5T200 1668 aaKnown RBP30.1■■■□□ 2.41
CLN3-209ENST00000561689 HSPA5P11021 654 aaKnown RBP30.1■■■□□ 2.41
CLN3-209ENST00000561689 EIF4G2P78344 907 aaKnown RBP eCLIP30.1■■■□□ 2.411e-9■■■■□ 22.4
CLN3-209ENST00000561689 ARHGAP31Q2M1Z3 1444 aa30.09■■■□□ 2.41
CLN3-209ENST00000561689 PPP6R1Q9UPN7 881 aa30.08■■■□□ 2.41
CLN3-209ENST00000561689 CNTLNQ9NXG0 1405 aa30.08■■■□□ 2.41
CLN3-209ENST00000561689 ARID4BQ4LE39 1312 aaPredicted RBP30.07■■■□□ 2.4
CLN3-209ENST00000561689 NOS1P29475 1434 aa30.05■■■□□ 2.4
CLN3-209ENST00000561689 PRAG1Q86YV5 1406 aa30.05■■■□□ 2.4
CLN3-209ENST00000561689 CFAP65Q6ZU64 1925 aaKnown RBP30.05■■■□□ 2.4
CLN3-209ENST00000561689 RALGAPBQ86X10 1494 aa30.03■■■□□ 2.4
CLN3-209ENST00000561689 CHGAP10645 457 aaKnown RBP30.02■■■□□ 2.4
CLN3-209ENST00000561689 FBXO31Q5XUX0 539 aaPredicted RBP29.99■■■□□ 2.39
CLN3-209ENST00000561689 CARD11Q9BXL7 1154 aa29.98■■■□□ 2.39
CLN3-209ENST00000561689 SYNMO15061 1565 aa29.97■■■□□ 2.39
CLN3-209ENST00000561689 ROCK2O75116 1388 aaKnown RBP29.96■■■□□ 2.39
CLN3-209ENST00000561689 ESF1Q9H501 851 aaKnown RBP29.96■■■□□ 2.39
CLN3-209ENST00000561689 NEURL4Q96JN8 1562 aa29.96■■■□□ 2.39
CLN3-209ENST00000561689 CLTCQ00610 1675 aaKnown RBP29.95■■■□□ 2.39
CLN3-209ENST00000561689 NBPF1Q3BBV0 1214 aa29.94■■■□□ 2.38
CLN3-209ENST00000561689 USP47Q96K76 1375 aa29.94■■■□□ 2.38
CLN3-209ENST00000561689 KIF1BO60333 1816 aa29.93■■■□□ 2.38
CLN3-209ENST00000561689 IDI1Q13907 227 aa29.93■■■□□ 2.38
CLN3-209ENST00000561689 STAC3Q96MF2 364 aa29.92■■■□□ 2.38
CLN3-209ENST00000561689 ADGRB3O60242 1522 aa29.92■■■□□ 2.38
CLN3-209ENST00000561689 DDX10Q13206 875 aaKnown RBP29.91■■■□□ 2.38
CLN3-209ENST00000561689 SLC52A1Q9NWF4 448 aa29.91■■■□□ 2.38
CLN3-209ENST00000561689 MROH2AA6NES4 1674 aa29.9■■■□□ 2.38
CLN3-209ENST00000561689 PREX1Q8TCU6 1659 aa29.9■■■□□ 2.38
CLN3-209ENST00000561689 TRPM1Q7Z4N2 1603 aa29.9■■■□□ 2.38
CLN3-209ENST00000561689 ERVK-7P63135 1459 aa29.89■■■□□ 2.38
CLN3-209ENST00000561689 PIK3C2BO00750 1634 aa29.88■■■□□ 2.37
CLN3-209ENST00000561689 ZMYM3Q14202 1370 aa29.87■■■□□ 2.37
CLN3-209ENST00000561689 MADDQ8WXG6 1647 aa29.85■■■□□ 2.37
CLN3-209ENST00000561689 ADGRF5Q8IZF2 1346 aa29.85■■■□□ 2.37
CLN3-209ENST00000561689 MIER1Q8N108 512 aa29.84■■■□□ 2.37
CLN3-209ENST00000561689 C11orf95C9JLR9 678 aaPredicted RBP29.84■■■□□ 2.37
CLN3-209ENST00000561689 WASHC2AQ641Q2 1341 aa29.84■■■□□ 2.37
CLN3-209ENST00000561689 GPRASP1Q5JY77 1395 aa29.84■■■□□ 2.37
CLN3-209ENST00000561689 MYOM2P54296 1465 aa29.82■■■□□ 2.36
CLN3-209ENST00000561689 RPGRIP1LQ68CZ1 1315 aa29.8■■■□□ 2.36
CLN3-209ENST00000561689 ST20-MTHFSA0A0A6YYL1 179 aa29.79■■■□□ 2.36
CLN3-209ENST00000561689 SPATA31D1Q6ZQQ2 1576 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms