RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 DAPK1P53355 1430 aa9.57□□□□□ -0.88
SPG11-221ENST00000560299 HNRNPMP52272 730 aaKnown RBP eCLIP9.57□□□□□ -0.88
SPG11-221ENST00000560299 ADGBQ8N7X0 1667 aa9.57□□□□□ -0.88
SPG11-221ENST00000560299 DNMT1P26358 1616 aaKnown RBP9.56□□□□□ -0.88
SPG11-221ENST00000560299 DHX29Q7Z478 1369 aaKnown RBP9.56□□□□□ -0.88
SPG11-221ENST00000560299 NPM3O75607 178 aaKnown RBP9.56□□□□□ -0.88
SPG11-221ENST00000560299 ABCA6Q8N139 1617 aa9.56□□□□□ -0.88
SPG11-221ENST00000560299 CNTLNQ9NXG0 1405 aa9.56□□□□□ -0.88
SPG11-221ENST00000560299 A2MP01023 1474 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 ROCK1Q13464 1354 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 HRCP23327 699 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 CHIC2Q9UKJ5 165 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 ABCC5O15440 1437 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 SETD5Q9C0A6 1442 aa9.55□□□□□ -0.88
SPG11-221ENST00000560299 ADGRL2O95490 1459 aa9.54□□□□□ -0.88
SPG11-221ENST00000560299 ANKRD30AQ9BXX3 1397 aa9.54□□□□□ -0.88
SPG11-221ENST00000560299 HFM1A2PYH4 1435 aa9.53□□□□□ -0.88
SPG11-221ENST00000560299 EIF2AK4Q9P2K8 1649 aaKnown RBP9.53□□□□□ -0.88
SPG11-221ENST00000560299 PTPRKQ15262 1439 aa9.52□□□□□ -0.89
SPG11-221ENST00000560299 RRP7BPQ9NSQ0 103 aa9.52□□□□□ -0.89
SPG11-221ENST00000560299 CROCC2H7BZ55 1655 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 DUOX2Q9NRD8 1548 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 NCOA1Q15788 1441 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 ERBINQ96RT1 1412 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 MYT1LQ9UL68 1186 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 PTPRMP28827 1452 aa9.51□□□□□ -0.89
SPG11-221ENST00000560299 CCER1Q8TC90 406 aaPredicted RBP9.5□□□□□ -0.89
SPG11-221ENST00000560299 MROH2AA6NES4 1674 aa9.5□□□□□ -0.89
SPG11-221ENST00000560299 SIGLEC1Q9BZZ2 1709 aa9.5□□□□□ -0.89
SPG11-221ENST00000560299 KDM5DQ9BY66 1539 aa9.5□□□□□ -0.89
SPG11-221ENST00000560299 RAB3GAP2Q9H2M9 1393 aa9.5□□□□□ -0.89
SPG11-221ENST00000560299 NAIPQ13075 1403 aa9.49□□□□□ -0.89
SPG11-221ENST00000560299 RNF17Q9BXT8 1623 aaKnown RBP9.49□□□□□ -0.89
SPG11-221ENST00000560299 NPATQ14207 1427 aa9.48□□□□□ -0.89
SPG11-221ENST00000560299 SETD1BQ9UPS6 1966 aaKnown RBP9.48□□□□□ -0.89
SPG11-221ENST00000560299 ARID4BQ4LE39 1312 aaPredicted RBP9.48□□□□□ -0.89
SPG11-221ENST00000560299 GCC2Q8IWJ2 1684 aa9.48□□□□□ -0.89
SPG11-221ENST00000560299 MADDQ8WXG6 1647 aa9.47□□□□□ -0.89
SPG11-221ENST00000560299 KIF15Q9NS87 1388 aa9.47□□□□□ -0.89
SPG11-221ENST00000560299 ZEB1P37275 1124 aaPredicted RBP9.46□□□□□ -0.9
SPG11-221ENST00000560299 TRIM52Q96A61 297 aa9.46□□□□□ -0.9
SPG11-221ENST00000560299 ARHGAP31Q2M1Z3 1444 aa9.46□□□□□ -0.9
SPG11-221ENST00000560299 DEPDC5O75140 1603 aa9.45□□□□□ -0.9
SPG11-221ENST00000560299 ZC3H13Q5T200 1668 aaKnown RBP9.45□□□□□ -0.9
SPG11-221ENST00000560299 FER1L4A9Z1Z3 1794 aa9.45□□□□□ -0.9
SPG11-221ENST00000560299 ANKRD50Q9ULJ7 1429 aa9.45□□□□□ -0.9
SPG11-221ENST00000560299 PRDM15P57071 1507 aaPredicted RBP9.45□□□□□ -0.9
SPG11-221ENST00000560299 CLSPNQ9HAW4 1339 aa9.44□□□□□ -0.9
SPG11-221ENST00000560299 LMTK2Q8IWU2 1503 aa9.44□□□□□ -0.9
SPG11-221ENST00000560299 VWDEQ8N2E2 1590 aa9.43□□□□□ -0.9
SPG11-221ENST00000560299 ZMYM3Q14202 1370 aa9.43□□□□□ -0.9
SPG11-221ENST00000560299 KIF3BO15066 747 aa9.42□□□□□ -0.9
SPG11-221ENST00000560299 ESF1Q9H501 851 aaKnown RBP9.42□□□□□ -0.9
SPG11-221ENST00000560299 MROH1Q8NDA8 1641 aa9.42□□□□□ -0.9
SPG11-221ENST00000560299 PZPP20742 1482 aa9.41□□□□□ -0.9
SPG11-221ENST00000560299 DHX57Q6P158 1386 aaKnown RBP9.41□□□□□ -0.9
SPG11-221ENST00000560299 RIMS1Q86UR5 1692 aaKnown RBP9.41□□□□□ -0.9
SPG11-221ENST00000560299 RPRD2Q5VT52 1461 aaKnown RBP9.4□□□□□ -0.9
SPG11-221ENST00000560299 ABCB7O75027 752 aa9.4□□□□□ -0.9
SPG11-221ENST00000560299 ABCC3O15438 1527 aa9.4□□□□□ -0.91
SPG11-221ENST00000560299 C3P01024 1663 aa9.39□□□□□ -0.91
SPG11-221ENST00000560299 WASHC2CQ9Y4E1 1318 aa9.39□□□□□ -0.91
SPG11-221ENST00000560299 MPHOSPH9Q99550 1183 aa9.39□□□□□ -0.91
SPG11-221ENST00000560299 LMTK3Q96Q04 1460 aa9.39□□□□□ -0.91
SPG11-221ENST00000560299 NUP155O75694 1391 aa9.38□□□□□ -0.91
SPG11-221ENST00000560299 KANK1Q14678 1352 aa9.38□□□□□ -0.91
SPG11-221ENST00000560299 GGT6Q6P531 493 aa9.38□□□□□ -0.91
SPG11-221ENST00000560299 SLC4A1APQ9BWU0 796 aaKnown RBP9.38□□□□□ -0.91
SPG11-221ENST00000560299 PREX1Q8TCU6 1659 aa9.38□□□□□ -0.91
SPG11-221ENST00000560299 UNC13BO14795 1591 aa9.37□□□□□ -0.91
SPG11-221ENST00000560299 NLRP1Q9C000 1473 aa9.37□□□□□ -0.91
SPG11-221ENST00000560299 SPATA31D1Q6ZQQ2 1576 aa9.37□□□□□ -0.91
SPG11-221ENST00000560299 CLTCQ00610 1675 aaKnown RBP9.36□□□□□ -0.91
SPG11-221ENST00000560299 MLECQ14165 292 aa9.36□□□□□ -0.91
SPG11-221ENST00000560299 ZNF219Q9P2Y4 722 aaPredicted RBP9.36□□□□□ -0.91
SPG11-221ENST00000560299 UHRF1BP1Q6BDS2 1440 aa9.36□□□□□ -0.91
SPG11-221ENST00000560299 KDM5AP29375 1690 aaKnown RBP9.36□□□□□ -0.91
SPG11-221ENST00000560299 PLA2R1Q13018 1463 aa9.35□□□□□ -0.91
SPG11-221ENST00000560299 ZNF142P52746 1687 aaPredicted RBP9.35□□□□□ -0.91
SPG11-221ENST00000560299 EFCAB6Q5THR3 1501 aa9.34□□□□□ -0.91
SPG11-221ENST00000560299 IQGAP3Q86VI3 1631 aa9.34□□□□□ -0.91
SPG11-221ENST00000560299 NOS1P29475 1434 aa9.33□□□□□ -0.92
SPG11-221ENST00000560299 SLC52A1Q9NWF4 448 aa9.33□□□□□ -0.92
SPG11-221ENST00000560299 CAMSAP1Q5T5Y3 1602 aa9.33□□□□□ -0.92
SPG11-221ENST00000560299 A2ML1A8K2U0 1454 aa9.33□□□□□ -0.92
SPG11-221ENST00000560299 TET3O43151 1660 aa9.32□□□□□ -0.92
SPG11-221ENST00000560299 PKD2Q13563 968 aa9.32□□□□□ -0.92
SPG11-221ENST00000560299 TIMELESSQ9UNS1 1208 aa9.32□□□□□ -0.92
SPG11-221ENST00000560299 TNRQ92752 1358 aa9.32□□□□□ -0.92
SPG11-221ENST00000560299 ERVK-7P63135 1459 aa9.32□□□□□ -0.92
SPG11-221ENST00000560299 CEP170BQ9Y4F5 1589 aaPredicted RBP9.3□□□□□ -0.92
SPG11-221ENST00000560299 CEBPAP49715 358 aaPredicted RBP9.3□□□□□ -0.92
SPG11-221ENST00000560299 NEUROD1Q13562 356 aa9.3□□□□□ -0.92
SPG11-221ENST00000560299 MYO3AQ8NEV4 1616 aa9.3□□□□□ -0.92
SPG11-221ENST00000560299 PTPRTO14522 1441 aa9.3□□□□□ -0.92
SPG11-221ENST00000560299 THEMISQ8N1K5 641 aaPredicted RBP9.29□□□□□ -0.92
SPG11-221ENST00000560299 RBM42Q9BTD8 480 aaKnown RBP9.29□□□□□ -0.92
SPG11-221ENST00000560299 ANKRD30BQ9BXX2 1392 aa9.28□□□□□ -0.92
SPG11-221ENST00000560299 CEP152O94986 1710 aa9.28□□□□□ -0.92
SPG11-221ENST00000560299 MED14O60244 1454 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms