RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 DEPDC5O75140 1603 aa32.96■■■□□ 2.87
SNX1-210ENST00000560260 HFM1A2PYH4 1435 aa32.95■■■□□ 2.87
SNX1-210ENST00000560260 RIMS1Q86UR5 1692 aaKnown RBP32.94■■■□□ 2.86
SNX1-210ENST00000560260 GGT6Q6P531 493 aa32.93■■■□□ 2.86
SNX1-210ENST00000560260 PRDM15P57071 1507 aaPredicted RBP32.91■■■□□ 2.86
SNX1-210ENST00000560260 CLTCQ00610 1675 aaKnown RBP32.87■■■□□ 2.85
SNX1-210ENST00000560260 UNC13BO14795 1591 aa32.87■■■□□ 2.85
SNX1-210ENST00000560260 KDM5DQ9BY66 1539 aa32.85■■■□□ 2.85
SNX1-210ENST00000560260 FAM135AQ9P2D6 1515 aa32.83■■■□□ 2.85
SNX1-210ENST00000560260 VWDEQ8N2E2 1590 aa32.83■■■□□ 2.85
SNX1-210ENST00000560260 ABCC3O15438 1527 aa32.82■■■□□ 2.85
SNX1-210ENST00000560260 CEP152O94986 1710 aa32.82■■■□□ 2.85
SNX1-210ENST00000560260 PTPRMP28827 1452 aa32.82■■■□□ 2.84
SNX1-210ENST00000560260 MROH2AA6NES4 1674 aa32.81■■■□□ 2.84
SNX1-210ENST00000560260 ZC3H13Q5T200 1668 aaKnown RBP32.8■■■□□ 2.84
SNX1-210ENST00000560260 CNTLNQ9NXG0 1405 aa32.79■■■□□ 2.84
SNX1-210ENST00000560260 PPP6R1Q9UPN7 881 aa32.77■■■□□ 2.84
SNX1-210ENST00000560260 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.77■■■□□ 2.847e-7■■□□□ 13.6
SNX1-210ENST00000560260 C3P01024 1663 aa32.76■■■□□ 2.84
SNX1-210ENST00000560260 TRIM26Q12899 539 aaPredicted RBP32.74■■■□□ 2.83
SNX1-210ENST00000560260 SETD5Q9C0A6 1442 aa32.73■■■□□ 2.83
SNX1-210ENST00000560260 WASHC2CQ9Y4E1 1318 aa32.72■■■□□ 2.83
SNX1-210ENST00000560260 CAMSAP1Q5T5Y3 1602 aa32.72■■■□□ 2.83
SNX1-210ENST00000560260 LMTK2Q8IWU2 1503 aa32.72■■■□□ 2.83
SNX1-210ENST00000560260 ESF1Q9H501 851 aaKnown RBP32.72■■■□□ 2.83
SNX1-210ENST00000560260 IQGAP3Q86VI3 1631 aa32.71■■■□□ 2.83
SNX1-210ENST00000560260 ZMYM3Q14202 1370 aa32.69■■■□□ 2.82
SNX1-210ENST00000560260 KANK1Q14678 1352 aa32.69■■■□□ 2.82
SNX1-210ENST00000560260 CEBPAP49715 358 aaPredicted RBP32.68■■■□□ 2.82
SNX1-210ENST00000560260 RAB3GAP2Q9H2M9 1393 aa32.67■■■□□ 2.82
SNX1-210ENST00000560260 PLPPR3Q6T4P5 718 aa32.65■■■□□ 2.82
SNX1-210ENST00000560260 NUP155O75694 1391 aa32.64■■■□□ 2.82
SNX1-210ENST00000560260 EFCAB6Q5THR3 1501 aa32.64■■■□□ 2.82
SNX1-210ENST00000560260 TET3O43151 1660 aa32.63■■■□□ 2.81
SNX1-210ENST00000560260 PZPP20742 1482 aa32.63■■■□□ 2.81
SNX1-210ENST00000560260 NPATQ14207 1427 aa32.59■■■□□ 2.81
SNX1-210ENST00000560260 ARHGAP31Q2M1Z3 1444 aa32.59■■■□□ 2.81
SNX1-210ENST00000560260 E9PCH4 1651 aa32.55■■■□□ 2.8
SNX1-210ENST00000560260 TRIM52Q96A61 297 aa32.53■■■□□ 2.8
SNX1-210ENST00000560260 PREX1Q8TCU6 1659 aa32.53■■■□□ 2.8
SNX1-210ENST00000560260 FBXO31Q5XUX0 539 aaPredicted RBP32.52■■■□□ 2.8
SNX1-210ENST00000560260 ERVK-7P63135 1459 aa32.52■■■□□ 2.8
SNX1-210ENST00000560260 SPATA31D1Q6ZQQ2 1576 aa32.52■■■□□ 2.8
SNX1-210ENST00000560260 CFAP65Q6ZU64 1925 aaKnown RBP32.48■■■□□ 2.79
SNX1-210ENST00000560260 RPRD2Q5VT52 1461 aaKnown RBP32.46■■■□□ 2.79
SNX1-210ENST00000560260 MYO3AQ8NEV4 1616 aa32.45■■■□□ 2.79
SNX1-210ENST00000560260 HRCP23327 699 aa32.44■■■□□ 2.78
SNX1-210ENST00000560260 AEBP2Q6ZN18 517 aaPredicted RBP32.44■■■□□ 2.78
SNX1-210ENST00000560260 SYNMO15061 1565 aa32.44■■■□□ 2.78
SNX1-210ENST00000560260 TNRQ92752 1358 aa32.43■■■□□ 2.78
SNX1-210ENST00000560260 NOS1P29475 1434 aa32.43■■■□□ 2.78
SNX1-210ENST00000560260 SLC4A1APQ9BWU0 796 aaKnown RBP32.39■■■□□ 2.78
SNX1-210ENST00000560260 SETD1BQ9UPS6 1966 aaKnown RBP32.39■■■□□ 2.78
SNX1-210ENST00000560260 PCGF6Q9BYE7 350 aa32.38■■■□□ 2.77
SNX1-210ENST00000560260 LMTK3Q96Q04 1460 aa32.37■■■□□ 2.77
SNX1-210ENST00000560260 ACIN1Q9UKV3 1341 aaKnown RBP32.36■■■□□ 2.77
SNX1-210ENST00000560260 PKD2Q13563 968 aa32.36■■■□□ 2.77
SNX1-210ENST00000560260 MPHOSPH9Q99550 1183 aa32.36■■■□□ 2.77
SNX1-210ENST00000560260 ZNF142P52746 1687 aaPredicted RBP32.36■■■□□ 2.77
SNX1-210ENST00000560260 SPHKAPQ2M3C7 1700 aa32.35■■■□□ 2.77
SNX1-210ENST00000560260 UHRF1BP1Q6BDS2 1440 aa32.35■■■□□ 2.77
SNX1-210ENST00000560260 CEP170BQ9Y4F5 1589 aaPredicted RBP32.33■■■□□ 2.77
SNX1-210ENST00000560260 PTPRTO14522 1441 aa32.32■■■□□ 2.76
SNX1-210ENST00000560260 UGGT1Q9NYU2 1555 aa32.32■■■□□ 2.76
SNX1-210ENST00000560260 PLA2R1Q13018 1463 aa32.31■■■□□ 2.76
SNX1-210ENST00000560260 NLRP1Q9C000 1473 aa32.31■■■□□ 2.76
SNX1-210ENST00000560260 FOXD1Q16676 465 aa32.3■■■□□ 2.76
SNX1-210ENST00000560260 PIK3C2BO00750 1634 aa32.3■■■□□ 2.76
SNX1-210ENST00000560260 A2ML1A8K2U0 1454 aa32.28■■■□□ 2.76
SNX1-210ENST00000560260 TRPM2O94759 1503 aa32.28■■■□□ 2.76
SNX1-210ENST00000560260 CLTCL1P53675 1640 aa32.23■■■□□ 2.75
SNX1-210ENST00000560260 UBR1Q8IWV7 1749 aa32.21■■■□□ 2.75
SNX1-210ENST00000560260 IDI1Q13907 227 aa32.2■■■□□ 2.74
SNX1-210ENST00000560260 ADGRB3O60242 1522 aa32.18■■■□□ 2.74
SNX1-210ENST00000560260 HSPA2P54652 639 aa32.18■■■□□ 2.74
SNX1-210ENST00000560260 SLC52A1Q9NWF4 448 aa32.16■■■□□ 2.74
SNX1-210ENST00000560260 KDM5AP29375 1690 aaKnown RBP32.14■■■□□ 2.74
SNX1-210ENST00000560260 TMEM131LA2VDJ0 1609 aa32.13■■■□□ 2.73
SNX1-210ENST00000560260 DHX57Q6P158 1386 aaKnown RBP32.13■■■□□ 2.73
SNX1-210ENST00000560260 MYO5BQ9ULV0 1848 aa32.13■■■□□ 2.73
SNX1-210ENST00000560260 ANKRD30BQ9BXX2 1392 aa32.1■■■□□ 2.73
SNX1-210ENST00000560260 CCDC144AA2RUR9 1427 aa32.05■■■□□ 2.72
SNX1-210ENST00000560260 ARHGAP23Q9P227 1491 aa32.04■■■□□ 2.72
SNX1-210ENST00000560260 KIF1BO60333 1816 aa32.03■■■□□ 2.72
SNX1-210ENST00000560260 STRCQ7RTU9 1775 aa32.03■■■□□ 2.72
SNX1-210ENST00000560260 SLIT1O75093 1534 aa32.03■■■□□ 2.72
SNX1-210ENST00000560260 CHGAP10645 457 aaKnown RBP32■■■□□ 2.71
SNX1-210ENST00000560260 THEMISQ8N1K5 641 aaPredicted RBP32■■■□□ 2.71
SNX1-210ENST00000560260 STAG3Q9UJ98 1225 aa32■■■□□ 2.71
SNX1-210ENST00000560260 TMEM2Q9UHN6 1383 aa31.99■■■□□ 2.71
SNX1-210ENST00000560260 POLR1AO95602 1720 aaPredicted RBP31.98■■■□□ 2.71
SNX1-210ENST00000560260 NEURL4Q96JN8 1562 aa31.97■■■□□ 2.71
SNX1-210ENST00000560260 ZFYVE9O95405 1425 aa31.96■■■□□ 2.71
SNX1-210ENST00000560260 SPATA31E1Q6ZUB1 1445 aa31.96■■■□□ 2.71
SNX1-210ENST00000560260 NCKAP5LQ9HCH0 1330 aa31.93■■■□□ 2.7
SNX1-210ENST00000560260 RIMS2Q9UQ26 1411 aa31.92■■■□□ 2.7
SNX1-210ENST00000560260 NEXMIFQ5QGS0 1516 aa31.91■■■□□ 2.7
SNX1-210ENST00000560260 LTKP29376 864 aa31.9■■■□□ 2.7
SNX1-210ENST00000560260 SCAF11Q99590 1463 aaKnown RBP31.9■■■□□ 2.7
SNX1-210ENST00000560260 ANKLE2Q86XL3 938 aa31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms