RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 ITGAEP38570 1179 aa18.17■□□□□ 0.5
RABGGTA-215ENST00000560207 GCC2Q8IWJ2 1684 aa18.17■□□□□ 0.5
RABGGTA-215ENST00000560207 DEPDC5O75140 1603 aa18.16■□□□□ 0.5
RABGGTA-215ENST00000560207 MADDQ8WXG6 1647 aa18.16■□□□□ 0.5
RABGGTA-215ENST00000560207 MLECQ14165 292 aa18.14■□□□□ 0.49
RABGGTA-215ENST00000560207 RIMS1Q86UR5 1692 aaKnown RBP18.14■□□□□ 0.49
RABGGTA-215ENST00000560207 KANK1Q14678 1352 aa18.14■□□□□ 0.49
RABGGTA-215ENST00000560207 KDM4FA0A1W2PPD8 638 aa18.13■□□□□ 0.49
RABGGTA-215ENST00000560207 GGT6Q6P531 493 aa18.13■□□□□ 0.49
RABGGTA-215ENST00000560207 SETD1BQ9UPS6 1966 aaKnown RBP18.13■□□□□ 0.49
RABGGTA-215ENST00000560207 HFM1A2PYH4 1435 aa18.13■□□□□ 0.49
RABGGTA-215ENST00000560207 PRDM15P57071 1507 aaPredicted RBP18.13■□□□□ 0.49
RABGGTA-215ENST00000560207 KDM5DQ9BY66 1539 aa18.12■□□□□ 0.49
RABGGTA-215ENST00000560207 CLTCQ00610 1675 aaKnown RBP18.1■□□□□ 0.49
RABGGTA-215ENST00000560207 PTPRMP28827 1452 aa18.09■□□□□ 0.49
RABGGTA-215ENST00000560207 WASHC2CQ9Y4E1 1318 aa18.09■□□□□ 0.49
RABGGTA-215ENST00000560207 UNC13BO14795 1591 aa18.08■□□□□ 0.49
RABGGTA-215ENST00000560207 NAIPQ13075 1403 aa18.08■□□□□ 0.49
RABGGTA-215ENST00000560207 MROH1Q8NDA8 1641 aa18.07■□□□□ 0.48
RABGGTA-215ENST00000560207 C3P01024 1663 aa18.06■□□□□ 0.48
RABGGTA-215ENST00000560207 AEBP2Q6ZN18 517 aaPredicted RBP18.06■□□□□ 0.48
RABGGTA-215ENST00000560207 VWDEQ8N2E2 1590 aa18.05■□□□□ 0.48
RABGGTA-215ENST00000560207 LMTK2Q8IWU2 1503 aa18.05■□□□□ 0.48
RABGGTA-215ENST00000560207 ZMYM3Q14202 1370 aa18.04■□□□□ 0.48
RABGGTA-215ENST00000560207 CEP152O94986 1710 aa18.03■□□□□ 0.48
RABGGTA-215ENST00000560207 ABCC3O15438 1527 aa18.03■□□□□ 0.48
RABGGTA-215ENST00000560207 CAMSAP1Q5T5Y3 1602 aa18.03■□□□□ 0.48
RABGGTA-215ENST00000560207 NPATQ14207 1427 aa18.03■□□□□ 0.48
RABGGTA-215ENST00000560207 IQGAP3Q86VI3 1631 aa18.02■□□□□ 0.48
RABGGTA-215ENST00000560207 ARHGAP31Q2M1Z3 1444 aa18.02■□□□□ 0.48
RABGGTA-215ENST00000560207 HRCP23327 699 aa18.01■□□□□ 0.47
RABGGTA-215ENST00000560207 TRIM26Q12899 539 aaPredicted RBP18.01■□□□□ 0.47
RABGGTA-215ENST00000560207 TET3O43151 1660 aa18.01■□□□□ 0.47
RABGGTA-215ENST00000560207 SETD5Q9C0A6 1442 aa18■□□□□ 0.47
RABGGTA-215ENST00000560207 PZPP20742 1482 aa18■□□□□ 0.47
RABGGTA-215ENST00000560207 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.99■□□□□ 0.474e-6■■□□□ 14.1
RABGGTA-215ENST00000560207 RPRD2Q5VT52 1461 aaKnown RBP17.99■□□□□ 0.47
RABGGTA-215ENST00000560207 PREX1Q8TCU6 1659 aa17.98■□□□□ 0.47
RABGGTA-215ENST00000560207 NUP155O75694 1391 aa17.97■□□□□ 0.47
RABGGTA-215ENST00000560207 EFCAB6Q5THR3 1501 aa17.96■□□□□ 0.47
RABGGTA-215ENST00000560207 CFAP65Q6ZU64 1925 aaKnown RBP17.94■□□□□ 0.46
RABGGTA-215ENST00000560207 SPATA31D1Q6ZQQ2 1576 aa17.92■□□□□ 0.46
RABGGTA-215ENST00000560207 TRIM52Q96A61 297 aa17.91■□□□□ 0.46
RABGGTA-215ENST00000560207 CEBPAP49715 358 aaPredicted RBP17.9■□□□□ 0.46
RABGGTA-215ENST00000560207 UHRF1BP1Q6BDS2 1440 aa17.89■□□□□ 0.46
RABGGTA-215ENST00000560207 NLRP1Q9C000 1473 aa17.89■□□□□ 0.45
RABGGTA-215ENST00000560207 E9PCH4 1651 aa17.89■□□□□ 0.45
RABGGTA-215ENST00000560207 ZNF142P52746 1687 aaPredicted RBP17.89■□□□□ 0.45
RABGGTA-215ENST00000560207 RAB3GAP2Q9H2M9 1393 aa17.89■□□□□ 0.45
RABGGTA-215ENST00000560207 ERVK-7P63135 1459 aa17.88■□□□□ 0.45
RABGGTA-215ENST00000560207 TNRQ92752 1358 aa17.88■□□□□ 0.45
RABGGTA-215ENST00000560207 MYO3AQ8NEV4 1616 aa17.87■□□□□ 0.45
RABGGTA-215ENST00000560207 KDM5AP29375 1690 aaKnown RBP17.87■□□□□ 0.45
RABGGTA-215ENST00000560207 SLC52A1Q9NWF4 448 aa17.86■□□□□ 0.45
RABGGTA-215ENST00000560207 PLPPR3Q6T4P5 718 aa17.85■□□□□ 0.45
RABGGTA-215ENST00000560207 SLC4A1APQ9BWU0 796 aaKnown RBP17.85■□□□□ 0.45
RABGGTA-215ENST00000560207 SPHKAPQ2M3C7 1700 aa17.84■□□□□ 0.45
RABGGTA-215ENST00000560207 NOS1P29475 1434 aa17.84■□□□□ 0.45
RABGGTA-215ENST00000560207 A2ML1A8K2U0 1454 aa17.83■□□□□ 0.45
RABGGTA-215ENST00000560207 CEP170BQ9Y4F5 1589 aaPredicted RBP17.83■□□□□ 0.44
RABGGTA-215ENST00000560207 FBXO31Q5XUX0 539 aaPredicted RBP17.82■□□□□ 0.44
RABGGTA-215ENST00000560207 LMTK3Q96Q04 1460 aa17.81■□□□□ 0.44
RABGGTA-215ENST00000560207 MPHOSPH9Q99550 1183 aa17.8■□□□□ 0.44
RABGGTA-215ENST00000560207 THEMISQ8N1K5 641 aaPredicted RBP17.79■□□□□ 0.44
RABGGTA-215ENST00000560207 PTPRTO14522 1441 aa17.79■□□□□ 0.44
RABGGTA-215ENST00000560207 PIK3C2BO00750 1634 aa17.79■□□□□ 0.44
RABGGTA-215ENST00000560207 PKD2Q13563 968 aa17.78■□□□□ 0.44
RABGGTA-215ENST00000560207 SYNMO15061 1565 aa17.78■□□□□ 0.44
RABGGTA-215ENST00000560207 UGGT1Q9NYU2 1555 aa17.78■□□□□ 0.44
RABGGTA-215ENST00000560207 TRPM2O94759 1503 aa17.77■□□□□ 0.43
RABGGTA-215ENST00000560207 KIF1BO60333 1816 aa17.77■□□□□ 0.43
RABGGTA-215ENST00000560207 UBR1Q8IWV7 1749 aa17.76■□□□□ 0.43
RABGGTA-215ENST00000560207 PLA2R1Q13018 1463 aa17.75■□□□□ 0.43
RABGGTA-215ENST00000560207 HDGFP51858 240 aaKnown RBP17.73■□□□□ 0.43
RABGGTA-215ENST00000560207 STAG3Q9UJ98 1225 aa17.73■□□□□ 0.43
RABGGTA-215ENST00000560207 IDI1Q13907 227 aa17.72■□□□□ 0.43
RABGGTA-215ENST00000560207 DMRT2Q9Y5R5 561 aa17.72■□□□□ 0.43
RABGGTA-215ENST00000560207 ADGRB3O60242 1522 aa17.72■□□□□ 0.43
RABGGTA-215ENST00000560207 POLR1AO95602 1720 aaPredicted RBP17.7■□□□□ 0.42
RABGGTA-215ENST00000560207 TMEM131LA2VDJ0 1609 aa17.69■□□□□ 0.42
RABGGTA-215ENST00000560207 CCDC144AA2RUR9 1427 aa17.69■□□□□ 0.42
RABGGTA-215ENST00000560207 NEURL4Q96JN8 1562 aa17.69■□□□□ 0.42
RABGGTA-215ENST00000560207 SLIT1O75093 1534 aa17.68■□□□□ 0.42
RABGGTA-215ENST00000560207 MYO5BQ9ULV0 1848 aa17.68■□□□□ 0.42
RABGGTA-215ENST00000560207 ANKLE2Q86XL3 938 aa17.67■□□□□ 0.42
RABGGTA-215ENST00000560207 CLTCL1P53675 1640 aa17.66■□□□□ 0.42
RABGGTA-215ENST00000560207 EID1Q9Y6B2 187 aa17.66■□□□□ 0.42
RABGGTA-215ENST00000560207 STRCQ7RTU9 1775 aa17.66■□□□□ 0.42
RABGGTA-215ENST00000560207 ARHGAP23Q9P227 1491 aa17.65■□□□□ 0.42
RABGGTA-215ENST00000560207 PCGF6Q9BYE7 350 aa17.65■□□□□ 0.42
RABGGTA-215ENST00000560207 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.64■□□□□ 0.41
RABGGTA-215ENST00000560207 TMEM2Q9UHN6 1383 aa17.64■□□□□ 0.41
RABGGTA-215ENST00000560207 HSPA2P54652 639 aa17.63■□□□□ 0.41
RABGGTA-215ENST00000560207 RPGRIP1LQ68CZ1 1315 aa17.62■□□□□ 0.41
RABGGTA-215ENST00000560207 ANKRD30BQ9BXX2 1392 aa17.62■□□□□ 0.41
RABGGTA-215ENST00000560207 MED14O60244 1454 aa17.62■□□□□ 0.41
RABGGTA-215ENST00000560207 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
RABGGTA-215ENST00000560207 SCAF11Q99590 1463 aaKnown RBP17.6■□□□□ 0.41
RABGGTA-215ENST00000560207 FOXD1Q16676 465 aa17.59■□□□□ 0.41
RABGGTA-215ENST00000560207 STAC3Q96MF2 364 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms