RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 RTEL1-TNFRSF6BF6WH68 1400 aa12.81□□□□□ -0.36
TRAF3-205ENST00000558700 NPATQ14207 1427 aa12.81□□□□□ -0.36
TRAF3-205ENST00000558700 CEBPAP49715 358 aaPredicted RBP12.81□□□□□ -0.36
TRAF3-205ENST00000558700 ZNF142P52746 1687 aaPredicted RBP12.8□□□□□ -0.36
TRAF3-205ENST00000558700 FAM135AQ9P2D6 1515 aa12.8□□□□□ -0.36
TRAF3-205ENST00000558700 MYO3AQ8NEV4 1616 aa12.8□□□□□ -0.36
TRAF3-205ENST00000558700 STRCQ7RTU9 1775 aa12.79□□□□□ -0.36
TRAF3-205ENST00000558700 FBXO41Q8TF61 875 aa12.78□□□□□ -0.36
TRAF3-205ENST00000558700 ZNF644Q9H582 1327 aaPredicted RBP12.78□□□□□ -0.36
TRAF3-205ENST00000558700 MAST1Q9Y2H9 1570 aa12.77□□□□□ -0.37
TRAF3-205ENST00000558700 KDM5DQ9BY66 1539 aa12.76□□□□□ -0.37
TRAF3-205ENST00000558700 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
TRAF3-205ENST00000558700 CEP170BQ9Y4F5 1589 aaPredicted RBP12.74□□□□□ -0.37
TRAF3-205ENST00000558700 MYOM3Q5VTT5 1437 aa12.74□□□□□ -0.37
TRAF3-205ENST00000558700 ZMYM3Q14202 1370 aa12.74□□□□□ -0.37
TRAF3-205ENST00000558700 EIF2AK4Q9P2K8 1649 aaKnown RBP12.73□□□□□ -0.37
TRAF3-205ENST00000558700 NCOA1Q15788 1441 aa12.73□□□□□ -0.37
TRAF3-205ENST00000558700 MIA2Q96PC5 1412 aa12.73□□□□□ -0.37
TRAF3-205ENST00000558700 DHX29Q7Z478 1369 aaKnown RBP12.73□□□□□ -0.37
TRAF3-205ENST00000558700 RSPH4AQ5TD94 716 aa12.73□□□□□ -0.37
TRAF3-205ENST00000558700 CROCC2H7BZ55 1655 aa12.73□□□□□ -0.37
TRAF3-205ENST00000558700 ZC3H13Q5T200 1668 aaKnown RBP12.73□□□□□ -0.37
TRAF3-205ENST00000558700 CAMSAP1Q5T5Y3 1602 aa12.73□□□□□ -0.37
TRAF3-205ENST00000558700 RNF17Q9BXT8 1623 aaKnown RBP12.73□□□□□ -0.37
TRAF3-205ENST00000558700 PTPRTO14522 1441 aa12.72□□□□□ -0.37
TRAF3-205ENST00000558700 PTPRKQ15262 1439 aa12.72□□□□□ -0.37
TRAF3-205ENST00000558700 GGT6Q6P531 493 aa12.71□□□□□ -0.37
TRAF3-205ENST00000558700 PLA2R1Q13018 1463 aa12.71□□□□□ -0.38
TRAF3-205ENST00000558700 PZPP20742 1482 aa12.69□□□□□ -0.38
TRAF3-205ENST00000558700 PTPN23Q9H3S7 1636 aa12.69□□□□□ -0.38
TRAF3-205ENST00000558700 SHANK2Q9UPX8 1470 aa12.68□□□□□ -0.38
TRAF3-205ENST00000558700 TSPY4P0CV99 314 aa12.68□□□□□ -0.38
TRAF3-205ENST00000558700 TSPY10P0CW01 314 aa12.68□□□□□ -0.38
TRAF3-205ENST00000558700 A2ML1A8K2U0 1454 aa12.67□□□□□ -0.38
TRAF3-205ENST00000558700 KIF3BO15066 747 aa12.67□□□□□ -0.38
TRAF3-205ENST00000558700 APLP2Q06481 763 aa12.67□□□□□ -0.38
TRAF3-205ENST00000558700 KANK4Q5T7N3 995 aaPredicted RBP12.67□□□□□ -0.38
TRAF3-205ENST00000558700 CERKQ8TCT0 537 aa12.67□□□□□ -0.38
TRAF3-205ENST00000558700 POLR1AO95602 1720 aaPredicted RBP12.67□□□□□ -0.38
TRAF3-205ENST00000558700 DNMT1P26358 1616 aaKnown RBP12.66□□□□□ -0.38
TRAF3-205ENST00000558700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.66□□□□□ -0.38
TRAF3-205ENST00000558700 DUOX2Q9NRD8 1548 aa12.66□□□□□ -0.38
TRAF3-205ENST00000558700 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.38
TRAF3-205ENST00000558700 MROH1Q8NDA8 1641 aa12.65□□□□□ -0.38
TRAF3-205ENST00000558700 TCOF1Q13428 1488 aaKnown RBP12.65□□□□□ -0.38
TRAF3-205ENST00000558700 ABCC3O15438 1527 aa12.64□□□□□ -0.39
TRAF3-205ENST00000558700 SAMD1Q6SPF0 538 aaPredicted RBP12.64□□□□□ -0.39
TRAF3-205ENST00000558700 CEP152O94986 1710 aa12.64□□□□□ -0.39
TRAF3-205ENST00000558700 TNRQ92752 1358 aa12.64□□□□□ -0.39
TRAF3-205ENST00000558700 IQSEC2Q5JU85 1478 aa12.64□□□□□ -0.39
TRAF3-205ENST00000558700 FGD6Q6ZV73 1430 aa12.63□□□□□ -0.39
TRAF3-205ENST00000558700 PRDM15P57071 1507 aaPredicted RBP12.63□□□□□ -0.39
TRAF3-205ENST00000558700 LTBP4Q8N2S1 1624 aa12.63□□□□□ -0.39
TRAF3-205ENST00000558700 NLRP1Q9C000 1473 aa12.62□□□□□ -0.39
TRAF3-205ENST00000558700 ERBINQ96RT1 1412 aa12.62□□□□□ -0.39
TRAF3-205ENST00000558700 WASHC2CQ9Y4E1 1318 aa12.62□□□□□ -0.39
TRAF3-205ENST00000558700 SPATA31D1Q6ZQQ2 1576 aa12.61□□□□□ -0.39
TRAF3-205ENST00000558700 DEPDC5O75140 1603 aa12.61□□□□□ -0.39
TRAF3-205ENST00000558700 DAPK1P53355 1430 aa12.61□□□□□ -0.39
TRAF3-205ENST00000558700 KIF15Q9NS87 1388 aa12.6□□□□□ -0.39
TRAF3-205ENST00000558700 PKD2Q13563 968 aa12.6□□□□□ -0.39
TRAF3-205ENST00000558700 ABCC5O15440 1437 aa12.6□□□□□ -0.39
TRAF3-205ENST00000558700 NEURL4Q96JN8 1562 aa12.59□□□□□ -0.39
TRAF3-205ENST00000558700 UGGT1Q9NYU2 1555 aa12.59□□□□□ -0.39
TRAF3-205ENST00000558700 ERVK-7P63135 1459 aa12.59□□□□□ -0.39
TRAF3-205ENST00000558700 NCKAP5LQ9HCH0 1330 aa12.58□□□□□ -0.4
TRAF3-205ENST00000558700 FBXO31Q5XUX0 539 aaPredicted RBP12.55□□□□□ -0.4
TRAF3-205ENST00000558700 ANKRD30AQ9BXX3 1397 aa12.55□□□□□ -0.4
TRAF3-205ENST00000558700 IQGAP1P46940 1657 aa12.54□□□□□ -0.4
TRAF3-205ENST00000558700 ADGRL2O95490 1459 aa12.54□□□□□ -0.4
TRAF3-205ENST00000558700 ATF5Q9Y2D1 282 aaPredicted RBP12.54□□□□□ -0.4
TRAF3-205ENST00000558700 UBR1Q8IWV7 1749 aa12.54□□□□□ -0.4
TRAF3-205ENST00000558700 ZNF335Q9H4Z2 1342 aaPredicted RBP12.53□□□□□ -0.4
TRAF3-205ENST00000558700 ARHGAP31Q2M1Z3 1444 aa12.53□□□□□ -0.4
TRAF3-205ENST00000558700 CPS1P31327 1500 aa12.52□□□□□ -0.4
TRAF3-205ENST00000558700 LMTK2Q8IWU2 1503 aa12.52□□□□□ -0.4
TRAF3-205ENST00000558700 KANK1Q14678 1352 aa12.52□□□□□ -0.41
TRAF3-205ENST00000558700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.52□□□□□ -0.41
TRAF3-205ENST00000558700 MED14O60244 1454 aa12.52□□□□□ -0.41
TRAF3-205ENST00000558700 VWDEQ8N2E2 1590 aa12.52□□□□□ -0.41
TRAF3-205ENST00000558700 CFAP65Q6ZU64 1925 aaKnown RBP12.51□□□□□ -0.41
TRAF3-205ENST00000558700 THEMISQ8N1K5 641 aaPredicted RBP12.51□□□□□ -0.41
TRAF3-205ENST00000558700 RRP7BPQ9NSQ0 103 aa12.5□□□□□ -0.41
TRAF3-205ENST00000558700 NPHP4O75161 1426 aaPredicted RBP12.5□□□□□ -0.41
TRAF3-205ENST00000558700 EFCAB6Q5THR3 1501 aa12.5□□□□□ -0.41
TRAF3-205ENST00000558700 SYNMO15061 1565 aa12.5□□□□□ -0.41
TRAF3-205ENST00000558700 KDM5AP29375 1690 aaKnown RBP12.5□□□□□ -0.41
TRAF3-205ENST00000558700 ANKLE2Q86XL3 938 aa12.49□□□□□ -0.41
TRAF3-205ENST00000558700 PIK3C2BO00750 1634 aa12.48□□□□□ -0.41
TRAF3-205ENST00000558700 SLIT1O75093 1534 aa12.47□□□□□ -0.41
TRAF3-205ENST00000558700 UNC13BO14795 1591 aa12.47□□□□□ -0.41
TRAF3-205ENST00000558700 SCAF11Q99590 1463 aaKnown RBP12.46□□□□□ -0.41
TRAF3-205ENST00000558700 TET3O43151 1660 aa12.46□□□□□ -0.41
TRAF3-205ENST00000558700 GCC2Q8IWJ2 1684 aa12.46□□□□□ -0.41
TRAF3-205ENST00000558700 CHIC2Q9UKJ5 165 aa12.46□□□□□ -0.41
TRAF3-205ENST00000558700 ARHGAP23Q9P227 1491 aa12.46□□□□□ -0.42
TRAF3-205ENST00000558700 FAM50AQ14320 339 aaKnown RBP12.45□□□□□ -0.42
TRAF3-205ENST00000558700 ANKRD50Q9ULJ7 1429 aa12.45□□□□□ -0.42
TRAF3-205ENST00000558700 ADGRB3O60242 1522 aa12.44□□□□□ -0.42
TRAF3-205ENST00000558700 RPRD2Q5VT52 1461 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms