RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 NUP155O75694 1391 aa24.83■■□□□ 1.57
SNX1-203ENST00000558040 BCORL1Q5H9F3 1711 aa24.83■■□□□ 1.57
SNX1-203ENST00000558040 KIF3BO15066 747 aa24.82■■□□□ 1.56
SNX1-203ENST00000558040 DEPDC5O75140 1603 aa24.81■■□□□ 1.56
SNX1-203ENST00000558040 CLSPNQ9HAW4 1339 aa24.8■■□□□ 1.56
SNX1-203ENST00000558040 RNF17Q9BXT8 1623 aaKnown RBP24.79■■□□□ 1.56
SNX1-203ENST00000558040 PZPP20742 1482 aa24.78■■□□□ 1.56
SNX1-203ENST00000558040 MPHOSPH9Q99550 1183 aa24.78■■□□□ 1.56
SNX1-203ENST00000558040 KANK1Q14678 1352 aa24.78■■□□□ 1.56
SNX1-203ENST00000558040 PRDM15P57071 1507 aaPredicted RBP24.77■■□□□ 1.56
SNX1-203ENST00000558040 IQGAP3Q86VI3 1631 aa24.77■■□□□ 1.56
SNX1-203ENST00000558040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.77■■□□□ 1.566e-7■■□□□ 13.5
SNX1-203ENST00000558040 SLC4A1APQ9BWU0 796 aaKnown RBP24.77■■□□□ 1.56
SNX1-203ENST00000558040 AGLP35573 1532 aa24.76■■□□□ 1.55
SNX1-203ENST00000558040 FAM135AQ9P2D6 1515 aa24.76■■□□□ 1.55
SNX1-203ENST00000558040 MROH1Q8NDA8 1641 aa24.72■■□□□ 1.55
SNX1-203ENST00000558040 VWDEQ8N2E2 1590 aa24.71■■□□□ 1.55
SNX1-203ENST00000558040 GGT6Q6P531 493 aa24.68■■□□□ 1.54
SNX1-203ENST00000558040 PKD2Q13563 968 aa24.66■■□□□ 1.54
SNX1-203ENST00000558040 ZEB1P37275 1124 aaPredicted RBP24.65■■□□□ 1.54
SNX1-203ENST00000558040 TET3O43151 1660 aa24.65■■□□□ 1.54
SNX1-203ENST00000558040 LMTK2Q8IWU2 1503 aa24.65■■□□□ 1.54
SNX1-203ENST00000558040 SIGLEC1Q9BZZ2 1709 aa24.64■■□□□ 1.53
SNX1-203ENST00000558040 ZC3H13Q5T200 1668 aaKnown RBP24.63■■□□□ 1.53
SNX1-203ENST00000558040 PPP6R1Q9UPN7 881 aa24.63■■□□□ 1.53
SNX1-203ENST00000558040 ARID4BQ4LE39 1312 aaPredicted RBP24.61■■□□□ 1.53
SNX1-203ENST00000558040 ABCC3O15438 1527 aa24.61■■□□□ 1.53
SNX1-203ENST00000558040 WASHC2CQ9Y4E1 1318 aa24.61■■□□□ 1.53
SNX1-203ENST00000558040 CEP152O94986 1710 aa24.6■■□□□ 1.53
SNX1-203ENST00000558040 FOXD1Q16676 465 aa24.59■■□□□ 1.53
SNX1-203ENST00000558040 EFCAB6Q5THR3 1501 aa24.58■■□□□ 1.53
SNX1-203ENST00000558040 ANKRD30BQ9BXX2 1392 aa24.57■■□□□ 1.52
SNX1-203ENST00000558040 E9PCH4 1651 aa24.56■■□□□ 1.52
SNX1-203ENST00000558040 CAMSAP1Q5T5Y3 1602 aa24.54■■□□□ 1.52
SNX1-203ENST00000558040 RPRD2Q5VT52 1461 aaKnown RBP24.54■■□□□ 1.52
SNX1-203ENST00000558040 MLECQ14165 292 aa24.53■■□□□ 1.52
SNX1-203ENST00000558040 ESF1Q9H501 851 aaKnown RBP24.51■■□□□ 1.51
SNX1-203ENST00000558040 ARHGAP31Q2M1Z3 1444 aa24.5■■□□□ 1.51
SNX1-203ENST00000558040 SIN3AQ96ST3 1273 aa24.49■■□□□ 1.51
SNX1-203ENST00000558040 NEUROD1Q13562 356 aa24.48■■□□□ 1.51
SNX1-203ENST00000558040 CLTCQ00610 1675 aaKnown RBP24.47■■□□□ 1.51
SNX1-203ENST00000558040 NPATQ14207 1427 aa24.47■■□□□ 1.51
SNX1-203ENST00000558040 CNTLNQ9NXG0 1405 aa24.47■■□□□ 1.51
SNX1-203ENST00000558040 SPHKAPQ2M3C7 1700 aa24.47■■□□□ 1.51
SNX1-203ENST00000558040 CCDC144AA2RUR9 1427 aa24.45■■□□□ 1.51
SNX1-203ENST00000558040 PTPRTO14522 1441 aa24.45■■□□□ 1.51
SNX1-203ENST00000558040 TRPM2O94759 1503 aa24.45■■□□□ 1.5
SNX1-203ENST00000558040 TIMELESSQ9UNS1 1208 aa24.44■■□□□ 1.5
SNX1-203ENST00000558040 PLA2R1Q13018 1463 aa24.44■■□□□ 1.5
SNX1-203ENST00000558040 TONSLQ96HA7 1378 aa24.42■■□□□ 1.5
SNX1-203ENST00000558040 MROH2AA6NES4 1674 aa24.4■■□□□ 1.5
SNX1-203ENST00000558040 FER1L4A9Z1Z3 1794 aa24.39■■□□□ 1.49
SNX1-203ENST00000558040 NOS1P29475 1434 aa24.37■■□□□ 1.49
SNX1-203ENST00000558040 ZMYM3Q14202 1370 aa24.36■■□□□ 1.49
SNX1-203ENST00000558040 PREX1Q8TCU6 1659 aa24.36■■□□□ 1.49
SNX1-203ENST00000558040 ERVK-7P63135 1459 aa24.33■■□□□ 1.49
SNX1-203ENST00000558040 CLTCL1P53675 1640 aa24.33■■□□□ 1.49
SNX1-203ENST00000558040 CFAP65Q6ZU64 1925 aaKnown RBP24.31■■□□□ 1.48
SNX1-203ENST00000558040 SPATA31D1Q6ZQQ2 1576 aa24.31■■□□□ 1.48
SNX1-203ENST00000558040 ADAMTSL3P82987 1691 aa24.3■■□□□ 1.48
SNX1-203ENST00000558040 SYNMO15061 1565 aa24.3■■□□□ 1.48
SNX1-203ENST00000558040 MADDQ8WXG6 1647 aa24.29■■□□□ 1.48
SNX1-203ENST00000558040 SLC52A1Q9NWF4 448 aa24.28■■□□□ 1.48
SNX1-203ENST00000558040 FBXO31Q5XUX0 539 aaPredicted RBP24.27■■□□□ 1.48
SNX1-203ENST00000558040 NEURL4Q96JN8 1562 aa24.27■■□□□ 1.48
SNX1-203ENST00000558040 UGGT1Q9NYU2 1555 aa24.27■■□□□ 1.48
SNX1-203ENST00000558040 PIK3C2BO00750 1634 aa24.27■■□□□ 1.48
SNX1-203ENST00000558040 KIF1BO60333 1816 aa24.26■■□□□ 1.47
SNX1-203ENST00000558040 C3P01024 1663 aa24.25■■□□□ 1.47
SNX1-203ENST00000558040 RIMS1Q86UR5 1692 aaKnown RBP24.25■■□□□ 1.47
SNX1-203ENST00000558040 L3MBTL2Q969R5 705 aa24.25■■□□□ 1.47
SNX1-203ENST00000558040 SPATA31E1Q6ZUB1 1445 aa24.24■■□□□ 1.47
SNX1-203ENST00000558040 TNRQ92752 1358 aa24.21■■□□□ 1.47
SNX1-203ENST00000558040 PPP1R15AO75807 674 aaPredicted RBP24.21■■□□□ 1.47
SNX1-203ENST00000558040 ADGRB3O60242 1522 aa24.2■■□□□ 1.47
SNX1-203ENST00000558040 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
SNX1-203ENST00000558040 RGL3Q3MIN7 710 aa24.19■■□□□ 1.46
SNX1-203ENST00000558040 IDI1Q13907 227 aa24.18■■□□□ 1.46
SNX1-203ENST00000558040 CHGAP10645 457 aaKnown RBP24.17■■□□□ 1.46
SNX1-203ENST00000558040 CEBPAP49715 358 aaPredicted RBP24.17■■□□□ 1.46
SNX1-203ENST00000558040 DCAF11Q8TEB1 546 aa24.15■■□□□ 1.46
SNX1-203ENST00000558040 STAC3Q96MF2 364 aa24.15■■□□□ 1.46
SNX1-203ENST00000558040 NLRP1Q9C000 1473 aa24.14■■□□□ 1.46
SNX1-203ENST00000558040 ZNF326Q5BKZ1 582 aaKnown RBP24.12■■□□□ 1.45
SNX1-203ENST00000558040 STAG3Q9UJ98 1225 aa24.12■■□□□ 1.45
SNX1-203ENST00000558040 TMEM131LA2VDJ0 1609 aa24.12■■□□□ 1.45
SNX1-203ENST00000558040 RPGRIP1LQ68CZ1 1315 aa24.11■■□□□ 1.45
SNX1-203ENST00000558040 PLPPR3Q6T4P5 718 aa24.11■■□□□ 1.45
SNX1-203ENST00000558040 PTPRMP28827 1452 aa24.1■■□□□ 1.45
SNX1-203ENST00000558040 UHRF1BP1Q6BDS2 1440 aa24.1■■□□□ 1.45
SNX1-203ENST00000558040 KDM2AQ9Y2K7 1162 aa24.09■■□□□ 1.45
SNX1-203ENST00000558040 KDM5AP29375 1690 aaKnown RBP24.08■■□□□ 1.45
SNX1-203ENST00000558040 IFT172Q9UG01 1749 aa24.07■■□□□ 1.44
SNX1-203ENST00000558040 MYOM2P54296 1465 aa24.07■■□□□ 1.44
SNX1-203ENST00000558040 A2ML1A8K2U0 1454 aa24.06■■□□□ 1.44
SNX1-203ENST00000558040 MYO3AQ8NEV4 1616 aa24.06■■□□□ 1.44
SNX1-203ENST00000558040 PPLO60437 1756 aa24.04■■□□□ 1.44
SNX1-203ENST00000558040 PRAG1Q86YV5 1406 aa24.04■■□□□ 1.44
SNX1-203ENST00000558040 MYO5BQ9ULV0 1848 aa24.04■■□□□ 1.44
SNX1-203ENST00000558040 NEXMIFQ5QGS0 1516 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms