RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 CFAP43Q8NDM7 1665 aa11.2□□□□□ -0.62
SPG11-204ENST00000557866 G3V3G9 751 aa11.18□□□□□ -0.62
SPG11-204ENST00000557866 DPY19L2Q6NUT2 758 aa11.18□□□□□ -0.62
SPG11-204ENST00000557866 C3orf67Q6ZVT6 689 aa11.18□□□□□ -0.62
SPG11-204ENST00000557866 CARMIL2Q6F5E8 1435 aa11.18□□□□□ -0.62
SPG11-204ENST00000557866 CCNB3Q8WWL7 1395 aa11.17□□□□□ -0.62
SPG11-204ENST00000557866 RGL2O15211 777 aa11.17□□□□□ -0.62
SPG11-204ENST00000557866 PRG4Q92954 1404 aaPredicted RBP11.17□□□□□ -0.62
SPG11-204ENST00000557866 EPRSP07814 1512 aaKnown RBP11.16□□□□□ -0.62
SPG11-204ENST00000557866 ARID3CA6NKF2 412 aa11.16□□□□□ -0.62
SPG11-204ENST00000557866 BCL11BQ9C0K0 894 aaPredicted RBP11.16□□□□□ -0.62
SPG11-204ENST00000557866 MTUS2Q5JR59 1369 aa11.16□□□□□ -0.62
SPG11-204ENST00000557866 CHD1O14646 1710 aa11.15□□□□□ -0.62
SPG11-204ENST00000557866 MAGI3Q5TCQ9 1506 aa11.15□□□□□ -0.62
SPG11-204ENST00000557866 NUP153P49790 1475 aaKnown RBP11.15□□□□□ -0.62
SPG11-204ENST00000557866 CCDC18Q5T9S5 1454 aa11.15□□□□□ -0.62
SPG11-204ENST00000557866 BOLA1Q9Y3E2 137 aa11.15□□□□□ -0.62
SPG11-204ENST00000557866 LRRIQ1Q96JM4 1722 aa11.15□□□□□ -0.63
SPG11-204ENST00000557866 CDK13Q14004 1512 aaKnown RBP11.14□□□□□ -0.63
SPG11-204ENST00000557866 PLB1Q6P1J6 1458 aa11.14□□□□□ -0.63
SPG11-204ENST00000557866 HECW1Q76N89 1606 aa11.14□□□□□ -0.63
SPG11-204ENST00000557866 STK24Q9Y6E0 443 aa11.14□□□□□ -0.63
SPG11-204ENST00000557866 STK25O00506 426 aa11.13□□□□□ -0.63
SPG11-204ENST00000557866 CLASP1Q7Z460 1538 aa11.12□□□□□ -0.63
SPG11-204ENST00000557866 PTPRGP23470 1445 aa11.11□□□□□ -0.63
SPG11-204ENST00000557866 SNPHO15079 494 aa11.11□□□□□ -0.63
SPG11-204ENST00000557866 NCOA2Q15596 1464 aa11.11□□□□□ -0.63
SPG11-204ENST00000557866 ARHGEF11O15085 1522 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 EHBP1L1Q8N3D4 1523 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 SHROOM2Q13796 1616 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 RAPGEF6Q8TEU7 1601 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 PHF8Q9UPP1 1060 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 ABCA8O94911 1581 aa11.1□□□□□ -0.63
SPG11-204ENST00000557866 ERCC6L2Q5T890 1561 aa11.09□□□□□ -0.63
SPG11-204ENST00000557866 NLRP6P59044 892 aa11.09□□□□□ -0.63
SPG11-204ENST00000557866 FAM50AQ14320 339 aaKnown RBP11.08□□□□□ -0.64
SPG11-204ENST00000557866 CCER1Q8TC90 406 aaPredicted RBP11.08□□□□□ -0.64
SPG11-204ENST00000557866 TMEM121BQ9BXQ6 578 aaPredicted RBP11.08□□□□□ -0.64
SPG11-204ENST00000557866 FGD6Q6ZV73 1430 aa11.08□□□□□ -0.64
SPG11-204ENST00000557866 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.07□□□□□ -0.64
SPG11-204ENST00000557866 ZEB1P37275 1124 aaPredicted RBP11.07□□□□□ -0.64
SPG11-204ENST00000557866 ITGAEP38570 1179 aa11.07□□□□□ -0.64
SPG11-204ENST00000557866 ATP10BO94823 1461 aa11.06□□□□□ -0.64
SPG11-204ENST00000557866 MS4A4AQ96JQ5 239 aa11.06□□□□□ -0.64
SPG11-204ENST00000557866 MYOM3Q5VTT5 1437 aa11.06□□□□□ -0.64
SPG11-204ENST00000557866 TROQ12816 1431 aaPredicted RBP11.04□□□□□ -0.64
SPG11-204ENST00000557866 UACAQ9BZF9 1416 aa11.04□□□□□ -0.64
SPG11-204ENST00000557866 CDK11AQ9UQ88 783 aaPredicted RBP11.04□□□□□ -0.64
SPG11-204ENST00000557866 SUPT6HQ7KZ85 1726 aaKnown RBP11.03□□□□□ -0.64
SPG11-204ENST00000557866 PTPRKQ15262 1439 aa11.02□□□□□ -0.64
SPG11-204ENST00000557866 ST18O60284 1047 aa11.02□□□□□ -0.65
SPG11-204ENST00000557866 MICALL2Q8IY33 904 aa11.02□□□□□ -0.65
SPG11-204ENST00000557866 FBXO22Q8NEZ5 403 aa11.02□□□□□ -0.65
SPG11-204ENST00000557866 MFRPQ9BY79 579 aa11.02□□□□□ -0.65
SPG11-204ENST00000557866 TCOF1Q13428 1488 aaKnown RBP11□□□□□ -0.65
SPG11-204ENST00000557866 PLEKHD1A6NEE1 506 aa11□□□□□ -0.65
SPG11-204ENST00000557866 MIA2Q96PC5 1412 aa11□□□□□ -0.65
SPG11-204ENST00000557866 CDAN1Q8IWY9 1227 aa10.98□□□□□ -0.65
SPG11-204ENST00000557866 DHX57Q6P158 1386 aaKnown RBP10.98□□□□□ -0.65
SPG11-204ENST00000557866 RAB3GAP2Q9H2M9 1393 aa10.98□□□□□ -0.65
SPG11-204ENST00000557866 SETD5Q9C0A6 1442 aa10.98□□□□□ -0.65
SPG11-204ENST00000557866 ABCC2Q92887 1545 aa10.97□□□□□ -0.65
SPG11-204ENST00000557866 GPATCH8Q9UKJ3 1502 aaKnown RBP10.97□□□□□ -0.65
SPG11-204ENST00000557866 PTPN23Q9H3S7 1636 aa10.97□□□□□ -0.65
SPG11-204ENST00000557866 UHRF1BP1LA0JNW5 1464 aa10.96□□□□□ -0.65
SPG11-204ENST00000557866 ABCC10Q5T3U5 1492 aa10.96□□□□□ -0.65
SPG11-204ENST00000557866 ZNF644Q9H582 1327 aaPredicted RBP10.96□□□□□ -0.65
SPG11-204ENST00000557866 HS6ST3Q8IZP7 471 aa10.96□□□□□ -0.65
SPG11-204ENST00000557866 KIF14Q15058 1648 aa10.95□□□□□ -0.66
SPG11-204ENST00000557866 CHGAP10645 457 aaKnown RBP10.93□□□□□ -0.66
SPG11-204ENST00000557866 CFDP1Q9UEE9 299 aaPredicted RBP10.93□□□□□ -0.66
SPG11-204ENST00000557866 ADCY10Q96PN6 1610 aa10.93□□□□□ -0.66
SPG11-204ENST00000557866 KDM5BQ9UGL1 1544 aa10.92□□□□□ -0.66
SPG11-204ENST00000557866 ABCC5O15440 1437 aa10.92□□□□□ -0.66
SPG11-204ENST00000557866 CHIC2Q9UKJ5 165 aa10.91□□□□□ -0.66
SPG11-204ENST00000557866 HFM1A2PYH4 1435 aa10.91□□□□□ -0.66
SPG11-204ENST00000557866 NAIPQ13075 1403 aa10.91□□□□□ -0.66
SPG11-204ENST00000557866 TMEM92Q6UXU6 159 aa10.9□□□□□ -0.66
SPG11-204ENST00000557866 CLSPNQ9HAW4 1339 aa10.89□□□□□ -0.67
SPG11-204ENST00000557866 DOK7Q18PE1 504 aa10.89□□□□□ -0.67
SPG11-204ENST00000557866 RRP7BPQ9NSQ0 103 aa10.89□□□□□ -0.67
SPG11-204ENST00000557866 DAPK1P53355 1430 aa10.89□□□□□ -0.67
SPG11-204ENST00000557866 CAMSAP2Q08AD1 1489 aa10.88□□□□□ -0.67
SPG11-204ENST00000557866 ZNF777Q9ULD5 760 aaPredicted RBP10.88□□□□□ -0.67
SPG11-204ENST00000557866 AKNAQ7Z591 1439 aa10.87□□□□□ -0.67
SPG11-204ENST00000557866 HOXB3P14651 431 aaPredicted RBP10.87□□□□□ -0.67
SPG11-204ENST00000557866 DNAJC5Q9H3Z4 198 aa10.87□□□□□ -0.67
SPG11-204ENST00000557866 ZNF710Q8N1W2 664 aa10.86□□□□□ -0.67
SPG11-204ENST00000557866 KCNH8Q96L42 1107 aa10.86□□□□□ -0.67
SPG11-204ENST00000557866 ZCCHC11Q5TAX3 1644 aaKnown RBP10.86□□□□□ -0.67
SPG11-204ENST00000557866 ROCK1Q13464 1354 aa10.86□□□□□ -0.67
SPG11-204ENST00000557866 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.85□□□□□ -0.67
SPG11-204ENST00000557866 MARVELD3Q96A59 401 aa10.85□□□□□ -0.67
SPG11-204ENST00000557866 MAPKBP1O60336 1514 aa10.84□□□□□ -0.67
SPG11-204ENST00000557866 RIMBP2O15034 1052 aa10.84□□□□□ -0.67
SPG11-204ENST00000557866 DNMT1P26358 1616 aaKnown RBP10.84□□□□□ -0.67
SPG11-204ENST00000557866 MBD5Q9P267 1494 aa10.83□□□□□ -0.68
SPG11-204ENST00000557866 PPP1R37O75864 691 aa10.83□□□□□ -0.68
SPG11-204ENST00000557866 HNRNPMP52272 730 aaKnown RBP eCLIP10.83□□□□□ -0.68
SPG11-204ENST00000557866 ITSN2Q9NZM3 1697 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms