RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 IQGAP1P46940 1657 aa16■□□□□ 0.15
NEDD1-211ENST00000557454 DEPDC5O75140 1603 aa16■□□□□ 0.15
NEDD1-211ENST00000557454 ATP7AQ04656 1500 aa15.99■□□□□ 0.15
NEDD1-211ENST00000557454 SYCP2Q9BX26 1530 aa15.99■□□□□ 0.15
NEDD1-211ENST00000557454 FAM135BQ49AJ0 1406 aa15.98■□□□□ 0.15
NEDD1-211ENST00000557454 THEMISQ8N1K5 641 aaPredicted RBP15.97■□□□□ 0.15
NEDD1-211ENST00000557454 TRIM52Q96A61 297 aa15.97■□□□□ 0.15
NEDD1-211ENST00000557454 FMN1Q68DA7 1419 aa15.96■□□□□ 0.15
NEDD1-211ENST00000557454 FAM135AQ9P2D6 1515 aa15.96■□□□□ 0.15
NEDD1-211ENST00000557454 UGGT1Q9NYU2 1555 aa15.96■□□□□ 0.14
NEDD1-211ENST00000557454 ZNF777Q9ULD5 760 aaPredicted RBP15.95■□□□□ 0.14
NEDD1-211ENST00000557454 INO80Q9ULG1 1556 aaPredicted RBP15.95■□□□□ 0.14
NEDD1-211ENST00000557454 PZPP20742 1482 aa15.94■□□□□ 0.14
NEDD1-211ENST00000557454 HNRNPMP52272 730 aaKnown RBP eCLIP15.93■□□□□ 0.14
NEDD1-211ENST00000557454 NLRP1Q9C000 1473 aa15.92■□□□□ 0.14
NEDD1-211ENST00000557454 MIA2Q96PC5 1412 aa15.91■□□□□ 0.14
NEDD1-211ENST00000557454 CDC42BPAQ5VT25 1732 aa15.89■□□□□ 0.13
NEDD1-211ENST00000557454 ROBO1Q9Y6N7 1651 aa15.89■□□□□ 0.13
NEDD1-211ENST00000557454 XIRP1Q702N8 1843 aaKnown RBP15.87■□□□□ 0.13
NEDD1-211ENST00000557454 ZC3H13Q5T200 1668 aaKnown RBP15.87■□□□□ 0.13
NEDD1-211ENST00000557454 LRRIQ1Q96JM4 1722 aa15.87■□□□□ 0.13
NEDD1-211ENST00000557454 JCADQ9P266 1359 aa15.87■□□□□ 0.13
NEDD1-211ENST00000557454 KDM5DQ9BY66 1539 aa15.86■□□□□ 0.13
NEDD1-211ENST00000557454 ZNF772Q68DY9 489 aaPredicted RBP15.85■□□□□ 0.13
NEDD1-211ENST00000557454 LRP6O75581 1613 aa15.85■□□□□ 0.13
NEDD1-211ENST00000557454 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
NEDD1-211ENST00000557454 KIAA1107Q9UPP5 1409 aa15.84■□□□□ 0.13
NEDD1-211ENST00000557454 ADGBQ8N7X0 1667 aa15.83■□□□□ 0.13
NEDD1-211ENST00000557454 TMEM94Q12767 1356 aa15.83■□□□□ 0.12
NEDD1-211ENST00000557454 MEX3CQ5U5Q3 659 aaKnown RBP15.82■□□□□ 0.12
NEDD1-211ENST00000557454 RXRBP28702 533 aa15.81■□□□□ 0.12
NEDD1-211ENST00000557454 SCAF11Q99590 1463 aaKnown RBP15.81■□□□□ 0.12
NEDD1-211ENST00000557454 GPATCH8Q9UKJ3 1502 aaKnown RBP15.81■□□□□ 0.12
NEDD1-211ENST00000557454 PLEKHH2Q8IVE3 1493 aa15.8■□□□□ 0.12
NEDD1-211ENST00000557454 WASHC2CQ9Y4E1 1318 aa15.8■□□□□ 0.12
NEDD1-211ENST00000557454 KIF3BO15066 747 aa15.8■□□□□ 0.12
NEDD1-211ENST00000557454 LRRC9Q6ZRR7 1453 aa15.79■□□□□ 0.12
NEDD1-211ENST00000557454 CDK12Q9NYV4 1490 aaPredicted RBP15.79■□□□□ 0.12
NEDD1-211ENST00000557454 DHX29Q7Z478 1369 aaKnown RBP15.79■□□□□ 0.12
NEDD1-211ENST00000557454 MAP3K1Q13233 1512 aa15.78■□□□□ 0.12
NEDD1-211ENST00000557454 PHLPP1O60346 1717 aa15.78■□□□□ 0.12
NEDD1-211ENST00000557454 RBM33Q96EV2 1170 aaKnown RBP15.77■□□□□ 0.12
NEDD1-211ENST00000557454 CCDC18Q5T9S5 1454 aa15.77■□□□□ 0.11
NEDD1-211ENST00000557454 EEA1Q15075 1411 aa15.77■□□□□ 0.11
NEDD1-211ENST00000557454 LTKP29376 864 aa15.76■□□□□ 0.11
NEDD1-211ENST00000557454 CFDP1Q9UEE9 299 aaPredicted RBP15.76■□□□□ 0.11
NEDD1-211ENST00000557454 SPATA31A6Q5VVP1 1343 aa15.75■□□□□ 0.11
NEDD1-211ENST00000557454 COL16A1Q07092 1604 aaPredicted RBP15.74■□□□□ 0.11
NEDD1-211ENST00000557454 SETBP1Q9Y6X0 1596 aa15.74■□□□□ 0.11
NEDD1-211ENST00000557454 TXNDC2Q86VQ3 553 aa15.73■□□□□ 0.11
NEDD1-211ENST00000557454 RGS12O14924 1447 aa15.73■□□□□ 0.11
NEDD1-211ENST00000557454 EHMT2Q96KQ7 1210 aa15.72■□□□□ 0.11
NEDD1-211ENST00000557454 ZRANB1Q9UGI0 708 aa15.72■□□□□ 0.11
NEDD1-211ENST00000557454 NCOA2Q15596 1464 aa15.71■□□□□ 0.11
NEDD1-211ENST00000557454 ARHGAP23Q9P227 1491 aa15.71■□□□□ 0.11
NEDD1-211ENST00000557454 RTEL1-TNFRSF6BF6WH68 1400 aa15.71■□□□□ 0.11
NEDD1-211ENST00000557454 FGD6Q6ZV73 1430 aa15.71■□□□□ 0.11
NEDD1-211ENST00000557454 PROSER2Q86WR7 435 aaPredicted RBP15.71■□□□□ 0.11
NEDD1-211ENST00000557454 ERVK-7P63135 1459 aa15.71■□□□□ 0.1
NEDD1-211ENST00000557454 SLAIN2Q9P270 581 aa15.7■□□□□ 0.1
NEDD1-211ENST00000557454 UBR1Q8IWV7 1749 aa15.7■□□□□ 0.1
NEDD1-211ENST00000557454 ZNF644Q9H582 1327 aaPredicted RBP15.69■□□□□ 0.1
NEDD1-211ENST00000557454 CASKIN1Q8WXD9 1431 aa15.69■□□□□ 0.1
NEDD1-211ENST00000557454 SLIT1O75093 1534 aa15.69■□□□□ 0.1
NEDD1-211ENST00000557454 MBD5Q9P267 1494 aa15.69■□□□□ 0.1
NEDD1-211ENST00000557454 MSH6P52701 1360 aa15.68■□□□□ 0.1
NEDD1-211ENST00000557454 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
NEDD1-211ENST00000557454 PRDM15P57071 1507 aaPredicted RBP15.68■□□□□ 0.1
NEDD1-211ENST00000557454 TIAM1Q13009 1591 aa15.67■□□□□ 0.1
NEDD1-211ENST00000557454 NUTM2BA6NNL0 878 aaPredicted RBP15.67■□□□□ 0.1
NEDD1-211ENST00000557454 NUTM2EB1AL46 878 aaPredicted RBP15.67■□□□□ 0.1
NEDD1-211ENST00000557454 UBTFP17480 764 aaKnown RBP15.67■□□□□ 0.1
NEDD1-211ENST00000557454 KCNA6P17658 529 aa15.67■□□□□ 0.1
NEDD1-211ENST00000557454 NUTM2DQ5VT03 806 aaPredicted RBP15.67■□□□□ 0.1
NEDD1-211ENST00000557454 NUTM2AQ8IVF1 878 aaPredicted RBP15.67■□□□□ 0.1
NEDD1-211ENST00000557454 AFF2P51816 1311 aa15.67■□□□□ 0.1
NEDD1-211ENST00000557454 EID1Q9Y6B2 187 aa15.66■□□□□ 0.1
NEDD1-211ENST00000557454 ABCC3O15438 1527 aa15.65■□□□□ 0.1
NEDD1-211ENST00000557454 NKTRP30414 1462 aaKnown RBP15.64■□□□□ 0.09
NEDD1-211ENST00000557454 SHPRHQ149N8 1683 aa15.63■□□□□ 0.09
NEDD1-211ENST00000557454 ATAD2Q6PL18 1390 aa15.62■□□□□ 0.09
NEDD1-211ENST00000557454 RBM6P78332 1123 aaKnown RBP15.61■□□□□ 0.09
NEDD1-211ENST00000557454 SLC26A8Q96RN1 970 aa15.61■□□□□ 0.09
NEDD1-211ENST00000557454 NWD1Q149M9 1564 aa15.6■□□□□ 0.09
NEDD1-211ENST00000557454 TMEM2Q9UHN6 1383 aa15.6■□□□□ 0.09
NEDD1-211ENST00000557454 AHDC1Q5TGY3 1603 aaPredicted RBP15.59■□□□□ 0.09
NEDD1-211ENST00000557454 EP400Q96L91 3159 aa15.59■□□□□ 0.09
NEDD1-211ENST00000557454 QTRT2Q9H974 415 aaKnown RBP15.58■□□□□ 0.08
NEDD1-211ENST00000557454 CCDC141Q6ZP82 1450 aa15.58■□□□□ 0.08
NEDD1-211ENST00000557454 FYCO1Q9BQS8 1478 aa15.58■□□□□ 0.08
NEDD1-211ENST00000557454 KDM5AP29375 1690 aaKnown RBP15.56■□□□□ 0.08
NEDD1-211ENST00000557454 TET3O43151 1660 aa15.55■□□□□ 0.08
NEDD1-211ENST00000557454 DIP2AQ14689 1571 aa15.55■□□□□ 0.08
NEDD1-211ENST00000557454 CAMSAP2Q08AD1 1489 aa15.55■□□□□ 0.08
NEDD1-211ENST00000557454 C8orf37Q96NL8 207 aa15.54■□□□□ 0.08
NEDD1-211ENST00000557454 PIAS4Q8N2W9 510 aaPredicted RBP15.52■□□□□ 0.08
NEDD1-211ENST00000557454 PIK3C2BO00750 1634 aa15.52■□□□□ 0.08
NEDD1-211ENST00000557454 MTUS2Q5JR59 1369 aa15.51■□□□□ 0.07
NEDD1-211ENST00000557454 MROH1Q8NDA8 1641 aa15.51■□□□□ 0.07
NEDD1-211ENST00000557454 STAG3Q9UJ98 1225 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms