RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 YEATS2Q9ULM3 1422 aa14.58□□□□□ -0.07
TMEM260-213ENST00000556929 HFM1A2PYH4 1435 aa14.58□□□□□ -0.08
TMEM260-213ENST00000556929 ATP10AO60312 1499 aa14.57□□□□□ -0.08
TMEM260-213ENST00000556929 A2MP01023 1474 aa14.57□□□□□ -0.08
TMEM260-213ENST00000556929 REREQ9P2R6 1566 aa14.56□□□□□ -0.08
TMEM260-213ENST00000556929 EIF2AK4Q9P2K8 1649 aaKnown RBP14.56□□□□□ -0.08
TMEM260-213ENST00000556929 NAIPQ13075 1403 aa14.56□□□□□ -0.08
TMEM260-213ENST00000556929 DHX29Q7Z478 1369 aaKnown RBP14.55□□□□□ -0.08
TMEM260-213ENST00000556929 ERBINQ96RT1 1412 aa14.55□□□□□ -0.08
TMEM260-213ENST00000556929 SETD5Q9C0A6 1442 aa14.55□□□□□ -0.08
TMEM260-213ENST00000556929 ANKRD50Q9ULJ7 1429 aa14.54□□□□□ -0.08
TMEM260-213ENST00000556929 BCORL1Q5H9F3 1711 aa14.53□□□□□ -0.08
TMEM260-213ENST00000556929 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.08
TMEM260-213ENST00000556929 AGLP35573 1532 aa14.5□□□□□ -0.09
TMEM260-213ENST00000556929 SIGLEC1Q9BZZ2 1709 aa14.49□□□□□ -0.09
TMEM260-213ENST00000556929 RAB3GAP2Q9H2M9 1393 aa14.48□□□□□ -0.09
TMEM260-213ENST00000556929 HRCP23327 699 aa14.48□□□□□ -0.09
TMEM260-213ENST00000556929 DEPDC5O75140 1603 aa14.48□□□□□ -0.09
TMEM260-213ENST00000556929 RNF17Q9BXT8 1623 aaKnown RBP14.48□□□□□ -0.09
TMEM260-213ENST00000556929 UNC13BO14795 1591 aa14.47□□□□□ -0.09
TMEM260-213ENST00000556929 KIF3BO15066 747 aa14.47□□□□□ -0.09
TMEM260-213ENST00000556929 ARID4BQ4LE39 1312 aaPredicted RBP14.46□□□□□ -0.09
TMEM260-213ENST00000556929 NPM3O75607 178 aaKnown RBP14.45□□□□□ -0.1
TMEM260-213ENST00000556929 PRDM15P57071 1507 aaPredicted RBP14.43□□□□□ -0.1
TMEM260-213ENST00000556929 GGT6Q6P531 493 aa14.43□□□□□ -0.1
TMEM260-213ENST00000556929 TRIM52Q96A61 297 aa14.43□□□□□ -0.1
TMEM260-213ENST00000556929 KANK1Q14678 1352 aa14.43□□□□□ -0.1
TMEM260-213ENST00000556929 ZC3H13Q5T200 1668 aaKnown RBP14.42□□□□□ -0.1
TMEM260-213ENST00000556929 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.42□□□□□ -0.1
TMEM260-213ENST00000556929 IQGAP3Q86VI3 1631 aa14.41□□□□□ -0.1
TMEM260-213ENST00000556929 MROH1Q8NDA8 1641 aa14.41□□□□□ -0.1
TMEM260-213ENST00000556929 CEP152O94986 1710 aa14.41□□□□□ -0.1
TMEM260-213ENST00000556929 KDM5DQ9BY66 1539 aa14.41□□□□□ -0.1
TMEM260-213ENST00000556929 FAM135AQ9P2D6 1515 aa14.41□□□□□ -0.1
TMEM260-213ENST00000556929 NUP155O75694 1391 aa14.4□□□□□ -0.1
TMEM260-213ENST00000556929 MLECQ14165 292 aa14.4□□□□□ -0.1
TMEM260-213ENST00000556929 FER1L4A9Z1Z3 1794 aa14.39□□□□□ -0.11
TMEM260-213ENST00000556929 ESF1Q9H501 851 aaKnown RBP14.38□□□□□ -0.11
TMEM260-213ENST00000556929 CLTCQ00610 1675 aaKnown RBP14.38□□□□□ -0.11
TMEM260-213ENST00000556929 VWDEQ8N2E2 1590 aa14.38□□□□□ -0.11
TMEM260-213ENST00000556929 TET3O43151 1660 aa14.37□□□□□ -0.11
TMEM260-213ENST00000556929 WASHC2CQ9Y4E1 1318 aa14.37□□□□□ -0.11
TMEM260-213ENST00000556929 CAMSAP1Q5T5Y3 1602 aa14.36□□□□□ -0.11
TMEM260-213ENST00000556929 MROH2AA6NES4 1674 aa14.36□□□□□ -0.11
TMEM260-213ENST00000556929 LMTK2Q8IWU2 1503 aa14.36□□□□□ -0.11
TMEM260-213ENST00000556929 ADAMTSL3P82987 1691 aa14.35□□□□□ -0.11
TMEM260-213ENST00000556929 ABCC3O15438 1527 aa14.35□□□□□ -0.11
TMEM260-213ENST00000556929 PZPP20742 1482 aa14.34□□□□□ -0.11
TMEM260-213ENST00000556929 KCNA4P22459 653 aa14.34□□□□□ -0.11
TMEM260-213ENST00000556929 SLC4A1APQ9BWU0 796 aaKnown RBP14.34□□□□□ -0.11
TMEM260-213ENST00000556929 CNTLNQ9NXG0 1405 aa14.33□□□□□ -0.11
TMEM260-213ENST00000556929 MPHOSPH9Q99550 1183 aa14.33□□□□□ -0.12
TMEM260-213ENST00000556929 MADDQ8WXG6 1647 aa14.33□□□□□ -0.12
TMEM260-213ENST00000556929 E9PCH4 1651 aa14.33□□□□□ -0.12
TMEM260-213ENST00000556929 RIMS1Q86UR5 1692 aaKnown RBP14.33□□□□□ -0.12
TMEM260-213ENST00000556929 EFCAB6Q5THR3 1501 aa14.31□□□□□ -0.12
TMEM260-213ENST00000556929 CFAP65Q6ZU64 1925 aaKnown RBP14.31□□□□□ -0.12
TMEM260-213ENST00000556929 DHX57Q6P158 1386 aaKnown RBP14.29□□□□□ -0.12
TMEM260-213ENST00000556929 RPRD2Q5VT52 1461 aaKnown RBP14.29□□□□□ -0.12
TMEM260-213ENST00000556929 C3P01024 1663 aa14.29□□□□□ -0.12
TMEM260-213ENST00000556929 PKD2Q13563 968 aa14.28□□□□□ -0.12
TMEM260-213ENST00000556929 ARHGAP31Q2M1Z3 1444 aa14.28□□□□□ -0.12
TMEM260-213ENST00000556929 SPHKAPQ2M3C7 1700 aa14.28□□□□□ -0.12
TMEM260-213ENST00000556929 PREX1Q8TCU6 1659 aa14.27□□□□□ -0.12
TMEM260-213ENST00000556929 ZMYM3Q14202 1370 aa14.27□□□□□ -0.12
TMEM260-213ENST00000556929 NPATQ14207 1427 aa14.24□□□□□ -0.13
TMEM260-213ENST00000556929 CCER1Q8TC90 406 aaPredicted RBP14.24□□□□□ -0.13
TMEM260-213ENST00000556929 SPATA31D1Q6ZQQ2 1576 aa14.22□□□□□ -0.13
TMEM260-213ENST00000556929 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
TMEM260-213ENST00000556929 TRPM2O94759 1503 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 KIF1BO60333 1816 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 CLSPNQ9HAW4 1339 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 PTPRMP28827 1452 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 ERVK-7P63135 1459 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 PTPRTO14522 1441 aa14.2□□□□□ -0.14
TMEM260-213ENST00000556929 NOS1P29475 1434 aa14.19□□□□□ -0.14
TMEM260-213ENST00000556929 CEBPAP49715 358 aaPredicted RBP14.19□□□□□ -0.14
TMEM260-213ENST00000556929 ANKRD30BQ9BXX2 1392 aa14.19□□□□□ -0.14
TMEM260-213ENST00000556929 SYNMO15061 1565 aa14.18□□□□□ -0.14
TMEM260-213ENST00000556929 KDM4FA0A1W2PPD8 638 aa14.18□□□□□ -0.14
TMEM260-213ENST00000556929 FBXO31Q5XUX0 539 aaPredicted RBP14.18□□□□□ -0.14
TMEM260-213ENST00000556929 SETD1BQ9UPS6 1966 aaKnown RBP14.18□□□□□ -0.14
TMEM260-213ENST00000556929 CCDC144AA2RUR9 1427 aa14.17□□□□□ -0.14
TMEM260-213ENST00000556929 PIK3C2BO00750 1634 aa14.16□□□□□ -0.14
TMEM260-213ENST00000556929 CLTCL1P53675 1640 aa14.16□□□□□ -0.14
TMEM260-213ENST00000556929 SLC52A1Q9NWF4 448 aa14.16□□□□□ -0.14
TMEM260-213ENST00000556929 TNRQ92752 1358 aa14.16□□□□□ -0.14
TMEM260-213ENST00000556929 PLA2R1Q13018 1463 aa14.16□□□□□ -0.14
TMEM260-213ENST00000556929 CACNB1Q02641 598 aaPredicted RBP14.14□□□□□ -0.15
TMEM260-213ENST00000556929 MYO3AQ8NEV4 1616 aa14.14□□□□□ -0.15
TMEM260-213ENST00000556929 UGGT1Q9NYU2 1555 aa14.13□□□□□ -0.15
TMEM260-213ENST00000556929 NLRP1Q9C000 1473 aa14.12□□□□□ -0.15
TMEM260-213ENST00000556929 KDM5AP29375 1690 aaKnown RBP14.12□□□□□ -0.15
TMEM260-213ENST00000556929 SIN3AQ96ST3 1273 aa14.12□□□□□ -0.15
TMEM260-213ENST00000556929 MYO5BQ9ULV0 1848 aa14.11□□□□□ -0.15
TMEM260-213ENST00000556929 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
TMEM260-213ENST00000556929 ZNF142P52746 1687 aaPredicted RBP14.1□□□□□ -0.15
TMEM260-213ENST00000556929 NEURL4Q96JN8 1562 aa14.1□□□□□ -0.15
TMEM260-213ENST00000556929 IDI1Q13907 227 aa14.1□□□□□ -0.15
TMEM260-213ENST00000556929 STAG3Q9UJ98 1225 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms