RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 MROH1Q8NDA8 1641 aa26.57■■□□□ 1.84
SHMT2-225ENST00000556798 DEPDC5O75140 1603 aa26.55■■□□□ 1.84
SHMT2-225ENST00000556798 C3P01024 1663 aa26.55■■□□□ 1.84
SHMT2-225ENST00000556798 AEBP2Q6ZN18 517 aaPredicted RBP26.55■■□□□ 1.84
SHMT2-225ENST00000556798 MROH2AA6NES4 1674 aa26.54■■□□□ 1.84
SHMT2-225ENST00000556798 GCC2Q8IWJ2 1684 aa26.54■■□□□ 1.84
SHMT2-225ENST00000556798 CEP152O94986 1710 aa26.53■■□□□ 1.84
SHMT2-225ENST00000556798 PLPPR3Q6T4P5 718 aa26.53■■□□□ 1.84
SHMT2-225ENST00000556798 ANKRD50Q9ULJ7 1429 aa26.53■■□□□ 1.84
SHMT2-225ENST00000556798 ESF1Q9H501 851 aaKnown RBP26.52■■□□□ 1.84
SHMT2-225ENST00000556798 PRDM15P57071 1507 aaPredicted RBP26.5■■□□□ 1.83
SHMT2-225ENST00000556798 KDM5DQ9BY66 1539 aa26.5■■□□□ 1.83
SHMT2-225ENST00000556798 CNTLNQ9NXG0 1405 aa26.49■■□□□ 1.83
SHMT2-225ENST00000556798 ZC3H13Q5T200 1668 aaKnown RBP26.49■■□□□ 1.83
SHMT2-225ENST00000556798 FAM135AQ9P2D6 1515 aa26.47■■□□□ 1.83
SHMT2-225ENST00000556798 ABCC3O15438 1527 aa26.46■■□□□ 1.83
SHMT2-225ENST00000556798 UNC13BO14795 1591 aa26.45■■□□□ 1.82
SHMT2-225ENST00000556798 CEBPAP49715 358 aaPredicted RBP26.44■■□□□ 1.82
SHMT2-225ENST00000556798 NAIPQ13075 1403 aa26.44■■□□□ 1.82
SHMT2-225ENST00000556798 CAMSAP1Q5T5Y3 1602 aa26.43■■□□□ 1.82
SHMT2-225ENST00000556798 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.43■■□□□ 1.82
SHMT2-225ENST00000556798 PPP6R1Q9UPN7 881 aa26.43■■□□□ 1.82
SHMT2-225ENST00000556798 WASHC2CQ9Y4E1 1318 aa26.42■■□□□ 1.82
SHMT2-225ENST00000556798 ZMYM3Q14202 1370 aa26.41■■□□□ 1.82
SHMT2-225ENST00000556798 HFM1A2PYH4 1435 aa26.4■■□□□ 1.82
SHMT2-225ENST00000556798 VWDEQ8N2E2 1590 aa26.4■■□□□ 1.82
SHMT2-225ENST00000556798 CFAP65Q6ZU64 1925 aaKnown RBP26.39■■□□□ 1.81
SHMT2-225ENST00000556798 KANK1Q14678 1352 aa26.36■■□□□ 1.81
SHMT2-225ENST00000556798 PREX1Q8TCU6 1659 aa26.34■■□□□ 1.81
SHMT2-225ENST00000556798 IQGAP3Q86VI3 1631 aa26.33■■□□□ 1.81
SHMT2-225ENST00000556798 SETD1BQ9UPS6 1966 aaKnown RBP26.33■■□□□ 1.8
SHMT2-225ENST00000556798 PZPP20742 1482 aa26.32■■□□□ 1.8
SHMT2-225ENST00000556798 LMTK2Q8IWU2 1503 aa26.32■■□□□ 1.8
SHMT2-225ENST00000556798 TET3O43151 1660 aa26.31■■□□□ 1.8
SHMT2-225ENST00000556798 EFCAB6Q5THR3 1501 aa26.29■■□□□ 1.8
SHMT2-225ENST00000556798 NPATQ14207 1427 aa26.28■■□□□ 1.8
SHMT2-225ENST00000556798 MYO3AQ8NEV4 1616 aa26.28■■□□□ 1.8
SHMT2-225ENST00000556798 NUP155O75694 1391 aa26.25■■□□□ 1.79
SHMT2-225ENST00000556798 FBXO31Q5XUX0 539 aaPredicted RBP26.25■■□□□ 1.79
SHMT2-225ENST00000556798 LMTK3Q96Q04 1460 aa26.24■■□□□ 1.79
SHMT2-225ENST00000556798 E9PCH4 1651 aa26.24■■□□□ 1.79
SHMT2-225ENST00000556798 SPATA31D1Q6ZQQ2 1576 aa26.23■■□□□ 1.79
SHMT2-225ENST00000556798 ERVK-7P63135 1459 aa26.23■■□□□ 1.79
SHMT2-225ENST00000556798 ARHGAP31Q2M1Z3 1444 aa26.22■■□□□ 1.79
SHMT2-225ENST00000556798 SETD5Q9C0A6 1442 aa26.22■■□□□ 1.79
SHMT2-225ENST00000556798 UHRF1BP1Q6BDS2 1440 aa26.21■■□□□ 1.79
SHMT2-225ENST00000556798 ZNF142P52746 1687 aaPredicted RBP26.2■■□□□ 1.78
SHMT2-225ENST00000556798 TNRQ92752 1358 aa26.19■■□□□ 1.78
SHMT2-225ENST00000556798 TRIM52Q96A61 297 aa26.17■■□□□ 1.78
SHMT2-225ENST00000556798 CEP170BQ9Y4F5 1589 aaPredicted RBP26.16■■□□□ 1.78
SHMT2-225ENST00000556798 RAB3GAP2Q9H2M9 1393 aa26.16■■□□□ 1.78
SHMT2-225ENST00000556798 RPRD2Q5VT52 1461 aaKnown RBP26.14■■□□□ 1.78
SHMT2-225ENST00000556798 SYNMO15061 1565 aa26.14■■□□□ 1.78
SHMT2-225ENST00000556798 HSPA2P54652 639 aa26.1■■□□□ 1.77
SHMT2-225ENST00000556798 SPHKAPQ2M3C7 1700 aa26.1■■□□□ 1.77
SHMT2-225ENST00000556798 NOS1P29475 1434 aa26.09■■□□□ 1.77
SHMT2-225ENST00000556798 TRIM26Q12899 539 aaPredicted RBP26.09■■□□□ 1.77
SHMT2-225ENST00000556798 A2ML1A8K2U0 1454 aa26.09■■□□□ 1.77
SHMT2-225ENST00000556798 NLRP1Q9C000 1473 aa26.09■■□□□ 1.77
SHMT2-225ENST00000556798 PIK3C2BO00750 1634 aa26.07■■□□□ 1.76
SHMT2-225ENST00000556798 UBR1Q8IWV7 1749 aa26.05■■□□□ 1.76
SHMT2-225ENST00000556798 UGGT1Q9NYU2 1555 aa26.04■■□□□ 1.76
SHMT2-225ENST00000556798 SLC4A1APQ9BWU0 796 aaKnown RBP26.04■■□□□ 1.76
SHMT2-225ENST00000556798 MYO5BQ9ULV0 1848 aa26.02■■□□□ 1.76
SHMT2-225ENST00000556798 STRCQ7RTU9 1775 aa26■■□□□ 1.75
SHMT2-225ENST00000556798 PKD2Q13563 968 aa26■■□□□ 1.75
SHMT2-225ENST00000556798 MPHOSPH9Q99550 1183 aa25.97■■□□□ 1.75
SHMT2-225ENST00000556798 KDM5AP29375 1690 aaKnown RBP25.96■■□□□ 1.75
SHMT2-225ENST00000556798 ACIN1Q9UKV3 1341 aaKnown RBP25.96■■□□□ 1.75
SHMT2-225ENST00000556798 FOXD1Q16676 465 aa25.96■■□□□ 1.75
SHMT2-225ENST00000556798 ADGRB3O60242 1522 aa25.96■■□□□ 1.75
SHMT2-225ENST00000556798 TRPM2O94759 1503 aa25.96■■□□□ 1.75
SHMT2-225ENST00000556798 PTPRTO14522 1441 aa25.96■■□□□ 1.75
SHMT2-225ENST00000556798 CLTCL1P53675 1640 aa25.96■■□□□ 1.75
SHMT2-225ENST00000556798 POLR1AO95602 1720 aaPredicted RBP25.95■■□□□ 1.74
SHMT2-225ENST00000556798 IDI1Q13907 227 aa25.95■■□□□ 1.74
SHMT2-225ENST00000556798 HRCP23327 699 aa25.92■■□□□ 1.74
SHMT2-225ENST00000556798 SLC52A1Q9NWF4 448 aa25.92■■□□□ 1.74
SHMT2-225ENST00000556798 TMEM131LA2VDJ0 1609 aa25.92■■□□□ 1.74
SHMT2-225ENST00000556798 PLA2R1Q13018 1463 aa25.91■■□□□ 1.74
SHMT2-225ENST00000556798 KIF1BO60333 1816 aa25.9■■□□□ 1.74
SHMT2-225ENST00000556798 STAG3Q9UJ98 1225 aa25.89■■□□□ 1.74
SHMT2-225ENST00000556798 THEMISQ8N1K5 641 aaPredicted RBP25.88■■□□□ 1.73
SHMT2-225ENST00000556798 NEURL4Q96JN8 1562 aa25.85■■□□□ 1.73
SHMT2-225ENST00000556798 NCKAP5LQ9HCH0 1330 aa25.85■■□□□ 1.73
SHMT2-225ENST00000556798 SLIT1O75093 1534 aa25.84■■□□□ 1.73
SHMT2-225ENST00000556798 CHGAP10645 457 aaKnown RBP25.84■■□□□ 1.73
SHMT2-225ENST00000556798 ARHGAP23Q9P227 1491 aa25.83■■□□□ 1.73
SHMT2-225ENST00000556798 TMEM2Q9UHN6 1383 aa25.81■■□□□ 1.72
SHMT2-225ENST00000556798 PCGF6Q9BYE7 350 aa25.79■■□□□ 1.72
SHMT2-225ENST00000556798 CCDC144AA2RUR9 1427 aa25.78■■□□□ 1.72
SHMT2-225ENST00000556798 IQGAP1P46940 1657 aa25.77■■□□□ 1.72
SHMT2-225ENST00000556798 ANKLE2Q86XL3 938 aa25.77■■□□□ 1.72
SHMT2-225ENST00000556798 SCAF11Q99590 1463 aaKnown RBP25.77■■□□□ 1.72
SHMT2-225ENST00000556798 ZFYVE9O95405 1425 aa25.74■■□□□ 1.71
SHMT2-225ENST00000556798 RIMS2Q9UQ26 1411 aa25.74■■□□□ 1.71
SHMT2-225ENST00000556798 LTKP29376 864 aa25.74■■□□□ 1.71
SHMT2-225ENST00000556798 TXNDC2Q86VQ3 553 aa25.73■■□□□ 1.71
SHMT2-225ENST00000556798 MED14O60244 1454 aa25.72■■□□□ 1.71
SHMT2-225ENST00000556798 NPHP4O75161 1426 aaPredicted RBP25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms