RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 EIF2AK4Q9P2K8 1649 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-212ENST00000556767 CNTLNQ9NXG0 1405 aa17.33■□□□□ 0.36
CCDC88C-212ENST00000556767 ROCK1Q13464 1354 aa17.33■□□□□ 0.36
CCDC88C-212ENST00000556767 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.33■□□□□ 0.36
CCDC88C-212ENST00000556767 PPP6R1Q9UPN7 881 aa17.33■□□□□ 0.36
CCDC88C-212ENST00000556767 CLTCQ00610 1675 aaKnown RBP17.32■□□□□ 0.36
CCDC88C-212ENST00000556767 WASHC2CQ9Y4E1 1318 aa17.32■□□□□ 0.36
CCDC88C-212ENST00000556767 ANKRD50Q9ULJ7 1429 aa17.31■□□□□ 0.36
CCDC88C-212ENST00000556767 ZMYM3Q14202 1370 aa17.29■□□□□ 0.36
CCDC88C-212ENST00000556767 RNF17Q9BXT8 1623 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-212ENST00000556767 KDM5DQ9BY66 1539 aa17.27■□□□□ 0.36
CCDC88C-212ENST00000556767 C3P01024 1663 aa17.27■□□□□ 0.36
CCDC88C-212ENST00000556767 KANK1Q14678 1352 aa17.27■□□□□ 0.35
CCDC88C-212ENST00000556767 MROH2AA6NES4 1674 aa17.26■□□□□ 0.35
CCDC88C-212ENST00000556767 MROH1Q8NDA8 1641 aa17.25■□□□□ 0.35
CCDC88C-212ENST00000556767 FAM135AQ9P2D6 1515 aa17.24■□□□□ 0.35
CCDC88C-212ENST00000556767 ABCC3O15438 1527 aa17.23■□□□□ 0.35
CCDC88C-212ENST00000556767 CEP152O94986 1710 aa17.23■□□□□ 0.35
CCDC88C-212ENST00000556767 PRDM15P57071 1507 aaPredicted RBP17.22■□□□□ 0.35
CCDC88C-212ENST00000556767 DEPDC5O75140 1603 aa17.22■□□□□ 0.35
CCDC88C-212ENST00000556767 ZC3H13Q5T200 1668 aaKnown RBP17.22■□□□□ 0.35
CCDC88C-212ENST00000556767 NAIPQ13075 1403 aa17.2■□□□□ 0.34
CCDC88C-212ENST00000556767 FBXO31Q5XUX0 539 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-212ENST00000556767 GCC2Q8IWJ2 1684 aa17.19■□□□□ 0.34
CCDC88C-212ENST00000556767 CAMSAP1Q5T5Y3 1602 aa17.18■□□□□ 0.34
CCDC88C-212ENST00000556767 HFM1A2PYH4 1435 aa17.18■□□□□ 0.34
CCDC88C-212ENST00000556767 UNC13BO14795 1591 aa17.17■□□□□ 0.34
CCDC88C-212ENST00000556767 NPATQ14207 1427 aa17.17■□□□□ 0.34
CCDC88C-212ENST00000556767 PZPP20742 1482 aa17.17■□□□□ 0.34
CCDC88C-212ENST00000556767 NUP155O75694 1391 aa17.16■□□□□ 0.34
CCDC88C-212ENST00000556767 UHRF1BP1Q6BDS2 1440 aa17.16■□□□□ 0.34
CCDC88C-212ENST00000556767 SETD1BQ9UPS6 1966 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-212ENST00000556767 PREX1Q8TCU6 1659 aa17.16■□□□□ 0.34
CCDC88C-212ENST00000556767 TRIM52Q96A61 297 aa17.15■□□□□ 0.34
CCDC88C-212ENST00000556767 VWDEQ8N2E2 1590 aa17.15■□□□□ 0.34
CCDC88C-212ENST00000556767 CFAP65Q6ZU64 1925 aaKnown RBP17.14■□□□□ 0.33
CCDC88C-212ENST00000556767 TNRQ92752 1358 aa17.14■□□□□ 0.33
CCDC88C-212ENST00000556767 LMTK3Q96Q04 1460 aa17.13■□□□□ 0.33
CCDC88C-212ENST00000556767 HSPA2P54652 639 aa17.13■□□□□ 0.33
CCDC88C-212ENST00000556767 LMTK2Q8IWU2 1503 aa17.12■□□□□ 0.33
CCDC88C-212ENST00000556767 ARHGAP31Q2M1Z3 1444 aa17.11■□□□□ 0.33
CCDC88C-212ENST00000556767 ERVK-7P63135 1459 aa17.1■□□□□ 0.33
CCDC88C-212ENST00000556767 EFCAB6Q5THR3 1501 aa17.1■□□□□ 0.33
CCDC88C-212ENST00000556767 IQGAP3Q86VI3 1631 aa17.1■□□□□ 0.33
CCDC88C-212ENST00000556767 MYO3AQ8NEV4 1616 aa17.1■□□□□ 0.33
CCDC88C-212ENST00000556767 TET3O43151 1660 aa17.1■□□□□ 0.33
CCDC88C-212ENST00000556767 SETD5Q9C0A6 1442 aa17.09■□□□□ 0.33
CCDC88C-212ENST00000556767 SPATA31D1Q6ZQQ2 1576 aa17.08■□□□□ 0.32
CCDC88C-212ENST00000556767 CEP170BQ9Y4F5 1589 aaPredicted RBP17.06■□□□□ 0.32
CCDC88C-212ENST00000556767 SLC4A1APQ9BWU0 796 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-212ENST00000556767 A2ML1A8K2U0 1454 aa17.04■□□□□ 0.32
CCDC88C-212ENST00000556767 RPRD2Q5VT52 1461 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-212ENST00000556767 NLRP1Q9C000 1473 aa17.04■□□□□ 0.32
CCDC88C-212ENST00000556767 E9PCH4 1651 aa17.04■□□□□ 0.32
CCDC88C-212ENST00000556767 RAB3GAP2Q9H2M9 1393 aa17.03■□□□□ 0.32
CCDC88C-212ENST00000556767 ZNF142P52746 1687 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-212ENST00000556767 STAG3Q9UJ98 1225 aa17.02■□□□□ 0.32
CCDC88C-212ENST00000556767 ACIN1Q9UKV3 1341 aaKnown RBP17■□□□□ 0.31
CCDC88C-212ENST00000556767 NOS1P29475 1434 aa17■□□□□ 0.31
CCDC88C-212ENST00000556767 TRIM26Q12899 539 aaPredicted RBP17■□□□□ 0.31
CCDC88C-212ENST00000556767 PKD2Q13563 968 aa17■□□□□ 0.31
CCDC88C-212ENST00000556767 SYNMO15061 1565 aa16.99■□□□□ 0.31
CCDC88C-212ENST00000556767 UGGT1Q9NYU2 1555 aa16.99■□□□□ 0.31
CCDC88C-212ENST00000556767 IDI1Q13907 227 aa16.99■□□□□ 0.31
CCDC88C-212ENST00000556767 THEMISQ8N1K5 641 aaPredicted RBP16.99■□□□□ 0.31
CCDC88C-212ENST00000556767 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
CCDC88C-212ENST00000556767 SLC52A1Q9NWF4 448 aa16.98■□□□□ 0.31
CCDC88C-212ENST00000556767 CHGAP10645 457 aaKnown RBP16.97■□□□□ 0.31
CCDC88C-212ENST00000556767 PIK3C2BO00750 1634 aa16.96■□□□□ 0.31
CCDC88C-212ENST00000556767 NCKAP5LQ9HCH0 1330 aa16.96■□□□□ 0.3
CCDC88C-212ENST00000556767 FOXD1Q16676 465 aa16.95■□□□□ 0.3
CCDC88C-212ENST00000556767 SPHKAPQ2M3C7 1700 aa16.93■□□□□ 0.3
CCDC88C-212ENST00000556767 UBR1Q8IWV7 1749 aa16.93■□□□□ 0.3
CCDC88C-212ENST00000556767 PLA2R1Q13018 1463 aa16.93■□□□□ 0.3
CCDC88C-212ENST00000556767 STRCQ7RTU9 1775 aa16.92■□□□□ 0.3
CCDC88C-212ENST00000556767 HRCP23327 699 aa16.92■□□□□ 0.3
CCDC88C-212ENST00000556767 ANKLE2Q86XL3 938 aa16.92■□□□□ 0.3
CCDC88C-212ENST00000556767 DMRT2Q9Y5R5 561 aa16.92■□□□□ 0.3
CCDC88C-212ENST00000556767 ADGRB3O60242 1522 aa16.91■□□□□ 0.3
CCDC88C-212ENST00000556767 PTPRTO14522 1441 aa16.9■□□□□ 0.3
CCDC88C-212ENST00000556767 TRPM2O94759 1503 aa16.88■□□□□ 0.29
CCDC88C-212ENST00000556767 TXNDC2Q86VQ3 553 aa16.88■□□□□ 0.29
CCDC88C-212ENST00000556767 EID1Q9Y6B2 187 aa16.88■□□□□ 0.29
CCDC88C-212ENST00000556767 KDM5AP29375 1690 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-212ENST00000556767 TMEM2Q9UHN6 1383 aa16.87■□□□□ 0.29
CCDC88C-212ENST00000556767 POLR1AO95602 1720 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-212ENST00000556767 ZNF326Q5BKZ1 582 aaKnown RBP16.86■□□□□ 0.29
CCDC88C-212ENST00000556767 MYO5BQ9ULV0 1848 aa16.86■□□□□ 0.29
CCDC88C-212ENST00000556767 TMEM131LA2VDJ0 1609 aa16.85■□□□□ 0.29
CCDC88C-212ENST00000556767 CLTCL1P53675 1640 aa16.85■□□□□ 0.29
CCDC88C-212ENST00000556767 SLIT1O75093 1534 aa16.85■□□□□ 0.29
CCDC88C-212ENST00000556767 PPP1R15AO75807 674 aaPredicted RBP16.84■□□□□ 0.29
CCDC88C-212ENST00000556767 LTKP29376 864 aa16.84■□□□□ 0.29
CCDC88C-212ENST00000556767 SCAF11Q99590 1463 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-212ENST00000556767 ARHGAP23Q9P227 1491 aa16.84■□□□□ 0.29
CCDC88C-212ENST00000556767 CCDC144AA2RUR9 1427 aa16.83■□□□□ 0.28
CCDC88C-212ENST00000556767 NPHP4O75161 1426 aaPredicted RBP16.83■□□□□ 0.28
CCDC88C-212ENST00000556767 HDGFP51858 240 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-212ENST00000556767 BCANQ96GW7 911 aa16.83■□□□□ 0.28
CCDC88C-212ENST00000556767 SENP3Q9H4L4 574 aaPredicted RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms