RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TNRQ92752 1358 aa20.3■□□□□ 0.84
SHMT2-223ENST00000556689 TIAM1Q13009 1591 aa20.29■□□□□ 0.84
SHMT2-223ENST00000556689 TOM1O60784 492 aa20.28■□□□□ 0.84
SHMT2-223ENST00000556689 ANKLE2Q86XL3 938 aa20.28■□□□□ 0.84
SHMT2-223ENST00000556689 EHBP1L1Q8N3D4 1523 aa20.27■□□□□ 0.84
SHMT2-223ENST00000556689 THEMISQ8N1K5 641 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-223ENST00000556689 DNMT1P26358 1616 aaKnown RBP20.27■□□□□ 0.83
SHMT2-223ENST00000556689 SCAF1Q9H7N4 1312 aaKnown RBP20.27■□□□□ 0.83
SHMT2-223ENST00000556689 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
SHMT2-223ENST00000556689 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
SHMT2-223ENST00000556689 PIP4K2BP78356 416 aa20.26■□□□□ 0.83
SHMT2-223ENST00000556689 CCDC141Q6ZP82 1450 aa20.24■□□□□ 0.83
SHMT2-223ENST00000556689 HSPA1LP34931 641 aa20.23■□□□□ 0.83
SHMT2-223ENST00000556689 MIA2Q96PC5 1412 aa20.23■□□□□ 0.83
SHMT2-223ENST00000556689 PZPP20742 1482 aa20.23■□□□□ 0.83
SHMT2-223ENST00000556689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.22■□□□□ 0.83
SHMT2-223ENST00000556689 SHANK2Q9UPX8 1470 aa20.21■□□□□ 0.83
SHMT2-223ENST00000556689 NCOA2Q15596 1464 aa20.2■□□□□ 0.82
SHMT2-223ENST00000556689 KDM5DQ9BY66 1539 aa20.2■□□□□ 0.82
SHMT2-223ENST00000556689 CPS1P31327 1500 aa20.19■□□□□ 0.82
SHMT2-223ENST00000556689 CAMSAP2Q08AD1 1489 aa20.18■□□□□ 0.82
SHMT2-223ENST00000556689 FAM135AQ9P2D6 1515 aa20.18■□□□□ 0.82
SHMT2-223ENST00000556689 NLRP1Q9C000 1473 aa20.17■□□□□ 0.82
SHMT2-223ENST00000556689 NEURL4Q96JN8 1562 aa20.15■□□□□ 0.82
SHMT2-223ENST00000556689 NPHP4O75161 1426 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-223ENST00000556689 UGGT1Q9NYU2 1555 aa20.13■□□□□ 0.81
SHMT2-223ENST00000556689 MED14O60244 1454 aa20.12■□□□□ 0.81
SHMT2-223ENST00000556689 POLR1AO95602 1720 aaPredicted RBP20.11■□□□□ 0.81
SHMT2-223ENST00000556689 ARHGEF5Q12774 1597 aa20.1■□□□□ 0.81
SHMT2-223ENST00000556689 VWDEQ8N2E2 1590 aa20.08■□□□□ 0.81
SHMT2-223ENST00000556689 DEPDC5O75140 1603 aa20.07■□□□□ 0.8
SHMT2-223ENST00000556689 PHF23Q9BUL5 403 aaPredicted RBP20.06■□□□□ 0.8
SHMT2-223ENST00000556689 LRRC9Q6ZRR7 1453 aa20.05■□□□□ 0.8
SHMT2-223ENST00000556689 MED1Q15648 1581 aaPredicted RBP20.04■□□□□ 0.8
SHMT2-223ENST00000556689 ABCC3O15438 1527 aa20.03■□□□□ 0.8
SHMT2-223ENST00000556689 KANK4Q5T7N3 995 aaPredicted RBP20.03■□□□□ 0.8
SHMT2-223ENST00000556689 SENP3Q9H4L4 574 aaPredicted RBP20.02■□□□□ 0.8
SHMT2-223ENST00000556689 ERVK-7P63135 1459 aa20.01■□□□□ 0.79
SHMT2-223ENST00000556689 TXNDC2Q86VQ3 553 aa20.01■□□□□ 0.79
SHMT2-223ENST00000556689 RNF17Q9BXT8 1623 aaKnown RBP20■□□□□ 0.79
SHMT2-223ENST00000556689 LRRC7Q96NW7 1537 aa20■□□□□ 0.79
SHMT2-223ENST00000556689 VPS8Q8N3P4 1428 aa20■□□□□ 0.79
SHMT2-223ENST00000556689 IQGAP1P46940 1657 aa20■□□□□ 0.79
SHMT2-223ENST00000556689 MAST1Q9Y2H9 1570 aa20■□□□□ 0.79
SHMT2-223ENST00000556689 LOC105371045A0A1W2PR82 267 aa19.99■□□□□ 0.79
SHMT2-223ENST00000556689 LTKP29376 864 aa19.99■□□□□ 0.79
SHMT2-223ENST00000556689 ALKQ9UM73 1620 aa19.98■□□□□ 0.79
SHMT2-223ENST00000556689 EID1Q9Y6B2 187 aa19.98■□□□□ 0.79
SHMT2-223ENST00000556689 MYOM3Q5VTT5 1437 aa19.98■□□□□ 0.79
SHMT2-223ENST00000556689 ZC3H13Q5T200 1668 aaKnown RBP19.97■□□□□ 0.79
SHMT2-223ENST00000556689 RRP7BPQ9NSQ0 103 aa19.96■□□□□ 0.79
SHMT2-223ENST00000556689 EIF2AK4Q9P2K8 1649 aaKnown RBP19.95■□□□□ 0.78
SHMT2-223ENST00000556689 SCAF11Q99590 1463 aaKnown RBP19.95■□□□□ 0.78
SHMT2-223ENST00000556689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.95■□□□□ 0.78
SHMT2-223ENST00000556689 DUOX2Q9NRD8 1548 aa19.94■□□□□ 0.78
SHMT2-223ENST00000556689 STAG3Q9UJ98 1225 aa19.93■□□□□ 0.78
SHMT2-223ENST00000556689 KIF15Q9NS87 1388 aa19.93■□□□□ 0.78
SHMT2-223ENST00000556689 ARHGAP31Q2M1Z3 1444 aa19.93■□□□□ 0.78
SHMT2-223ENST00000556689 MAP3K1Q13233 1512 aa19.92■□□□□ 0.78
SHMT2-223ENST00000556689 MROH1Q8NDA8 1641 aa19.92■□□□□ 0.78
SHMT2-223ENST00000556689 STRCP1A6NGW2 1772 aa19.92■□□□□ 0.78
SHMT2-223ENST00000556689 ARHGAP23Q9P227 1491 aa19.9■□□□□ 0.78
SHMT2-223ENST00000556689 SLIT1O75093 1534 aa19.89■□□□□ 0.77
SHMT2-223ENST00000556689 CFAP65Q6ZU64 1925 aaKnown RBP19.88■□□□□ 0.77
SHMT2-223ENST00000556689 UBR1Q8IWV7 1749 aa19.88■□□□□ 0.77
SHMT2-223ENST00000556689 SYNMO15061 1565 aa19.88■□□□□ 0.77
SHMT2-223ENST00000556689 ABCC5O15440 1437 aa19.88■□□□□ 0.77
SHMT2-223ENST00000556689 ERBINQ96RT1 1412 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 KANK1Q14678 1352 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 TMEM2Q9UHN6 1383 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 APLP2Q06481 763 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 IDI1Q13907 227 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 CEP152O94986 1710 aa19.87■□□□□ 0.77
SHMT2-223ENST00000556689 RGS17Q9UGC6 210 aaPredicted RBP19.85■□□□□ 0.77
SHMT2-223ENST00000556689 KCNA6P17658 529 aa19.84■□□□□ 0.77
SHMT2-223ENST00000556689 PRDM15P57071 1507 aaPredicted RBP19.83■□□□□ 0.77
SHMT2-223ENST00000556689 CHIC2Q9UKJ5 165 aa19.83■□□□□ 0.77
SHMT2-223ENST00000556689 FAM135BQ49AJ0 1406 aa19.83■□□□□ 0.76
SHMT2-223ENST00000556689 PROSER2Q86WR7 435 aaPredicted RBP19.82■□□□□ 0.76
SHMT2-223ENST00000556689 SLC26A8Q96RN1 970 aa19.82■□□□□ 0.76
SHMT2-223ENST00000556689 TMEM94Q12767 1356 aa19.81■□□□□ 0.76
SHMT2-223ENST00000556689 DAPK1P53355 1430 aa19.8■□□□□ 0.76
SHMT2-223ENST00000556689 ANKRD30AQ9BXX3 1397 aa19.8■□□□□ 0.76
SHMT2-223ENST00000556689 RBM33Q96EV2 1170 aaKnown RBP19.78■□□□□ 0.76
SHMT2-223ENST00000556689 BCANQ96GW7 911 aa19.78■□□□□ 0.76
SHMT2-223ENST00000556689 SLC52A1Q9NWF4 448 aa19.78■□□□□ 0.76
SHMT2-223ENST00000556689 PIK3C2BO00750 1634 aa19.77■□□□□ 0.76
SHMT2-223ENST00000556689 EFCAB6Q5THR3 1501 aa19.76■□□□□ 0.75
SHMT2-223ENST00000556689 PTPN23Q9H3S7 1636 aa19.76■□□□□ 0.75
SHMT2-223ENST00000556689 LMTK2Q8IWU2 1503 aa19.75■□□□□ 0.75
SHMT2-223ENST00000556689 FGD6Q6ZV73 1430 aa19.74■□□□□ 0.75
SHMT2-223ENST00000556689 POTEAQ6S8J7 498 aa19.73■□□□□ 0.75
SHMT2-223ENST00000556689 NOS1P29475 1434 aa19.73■□□□□ 0.75
SHMT2-223ENST00000556689 TET3O43151 1660 aa19.72■□□□□ 0.75
SHMT2-223ENST00000556689 XIRP1Q702N8 1843 aaKnown RBP19.72■□□□□ 0.75
SHMT2-223ENST00000556689 HDGFP51858 240 aaKnown RBP19.72■□□□□ 0.75
SHMT2-223ENST00000556689 CROCC2H7BZ55 1655 aa19.71■□□□□ 0.75
SHMT2-223ENST00000556689 SLAIN2Q9P270 581 aa19.71■□□□□ 0.75
SHMT2-223ENST00000556689 KDM5AP29375 1690 aaKnown RBP19.7■□□□□ 0.74
SHMT2-223ENST00000556689 MSH6P52701 1360 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms