RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TRIM52Q96A61 297 aa20.94■□□□□ 0.94
VIPAS39-208ENST00000556412 WASHC2CQ9Y4E1 1318 aa20.94■□□□□ 0.94
VIPAS39-208ENST00000556412 RAB3GAP2Q9H2M9 1393 aa20.94■□□□□ 0.94
VIPAS39-208ENST00000556412 KANK1Q14678 1352 aa20.93■□□□□ 0.94
VIPAS39-208ENST00000556412 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
VIPAS39-208ENST00000556412 BCORL1Q5H9F3 1711 aa20.91■□□□□ 0.94
VIPAS39-208ENST00000556412 NUP155O75694 1391 aa20.91■□□□□ 0.94
VIPAS39-208ENST00000556412 KDM4FA0A1W2PPD8 638 aa20.9■□□□□ 0.94
VIPAS39-208ENST00000556412 PPP6R1Q9UPN7 881 aa20.9■□□□□ 0.94
VIPAS39-208ENST00000556412 RNF17Q9BXT8 1623 aaKnown RBP20.9■□□□□ 0.94
VIPAS39-208ENST00000556412 PRDM15P57071 1507 aaPredicted RBP20.88■□□□□ 0.93
VIPAS39-208ENST00000556412 MROH1Q8NDA8 1641 aa20.87■□□□□ 0.93
VIPAS39-208ENST00000556412 KDM5DQ9BY66 1539 aa20.86■□□□□ 0.93
VIPAS39-208ENST00000556412 MADDQ8WXG6 1647 aa20.86■□□□□ 0.93
VIPAS39-208ENST00000556412 CNTLNQ9NXG0 1405 aa20.85■□□□□ 0.93
VIPAS39-208ENST00000556412 UNC13BO14795 1591 aa20.85■□□□□ 0.93
VIPAS39-208ENST00000556412 DEPDC5O75140 1603 aa20.85■□□□□ 0.93
VIPAS39-208ENST00000556412 ADAMTSL3P82987 1691 aa20.84■□□□□ 0.93
VIPAS39-208ENST00000556412 ABCC3O15438 1527 aa20.83■□□□□ 0.93
VIPAS39-208ENST00000556412 CEBPAP49715 358 aaPredicted RBP20.83■□□□□ 0.92
VIPAS39-208ENST00000556412 ZMYM3Q14202 1370 aa20.81■□□□□ 0.92
VIPAS39-208ENST00000556412 SLC4A1APQ9BWU0 796 aaKnown RBP20.81■□□□□ 0.92
VIPAS39-208ENST00000556412 FER1L4A9Z1Z3 1794 aa20.8■□□□□ 0.92
VIPAS39-208ENST00000556412 FAM135AQ9P2D6 1515 aa20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 CLTCQ00610 1675 aaKnown RBP20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 RIMS1Q86UR5 1692 aaKnown RBP20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 HRCP23327 699 aa20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 VWDEQ8N2E2 1590 aa20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 ACIN1Q9UKV3 1341 aaKnown RBP20.79■□□□□ 0.92
VIPAS39-208ENST00000556412 PTPRMP28827 1452 aa20.78■□□□□ 0.92
VIPAS39-208ENST00000556412 LMTK2Q8IWU2 1503 aa20.76■□□□□ 0.91
VIPAS39-208ENST00000556412 MPHOSPH9Q99550 1183 aa20.76■□□□□ 0.91
VIPAS39-208ENST00000556412 PZPP20742 1482 aa20.76■□□□□ 0.91
VIPAS39-208ENST00000556412 ZC3H13Q5T200 1668 aaKnown RBP20.76■□□□□ 0.91
VIPAS39-208ENST00000556412 CEP152O94986 1710 aa20.75■□□□□ 0.91
VIPAS39-208ENST00000556412 IQGAP3Q86VI3 1631 aa20.75■□□□□ 0.91
VIPAS39-208ENST00000556412 PKD2Q13563 968 aa20.75■□□□□ 0.91
VIPAS39-208ENST00000556412 FBXO31Q5XUX0 539 aaPredicted RBP20.75■□□□□ 0.91
VIPAS39-208ENST00000556412 NPATQ14207 1427 aa20.73■□□□□ 0.91
VIPAS39-208ENST00000556412 CAMSAP1Q5T5Y3 1602 aa20.73■□□□□ 0.91
VIPAS39-208ENST00000556412 EFCAB6Q5THR3 1501 aa20.72■□□□□ 0.91
VIPAS39-208ENST00000556412 FOXD1Q16676 465 aa20.72■□□□□ 0.91
VIPAS39-208ENST00000556412 ARHGAP31Q2M1Z3 1444 aa20.7■□□□□ 0.9
VIPAS39-208ENST00000556412 MROH2AA6NES4 1674 aa20.7■□□□□ 0.9
VIPAS39-208ENST00000556412 TET3O43151 1660 aa20.7■□□□□ 0.9
VIPAS39-208ENST00000556412 C3P01024 1663 aa20.67■□□□□ 0.9
VIPAS39-208ENST00000556412 ERVK-7P63135 1459 aa20.66■□□□□ 0.9
VIPAS39-208ENST00000556412 RPRD2Q5VT52 1461 aaKnown RBP20.66■□□□□ 0.9
VIPAS39-208ENST00000556412 TNRQ92752 1358 aa20.65■□□□□ 0.9
VIPAS39-208ENST00000556412 AEBP2Q6ZN18 517 aaPredicted RBP20.64■□□□□ 0.9
VIPAS39-208ENST00000556412 E9PCH4 1651 aa20.63■□□□□ 0.89
VIPAS39-208ENST00000556412 SPATA31D1Q6ZQQ2 1576 aa20.6■□□□□ 0.89
VIPAS39-208ENST00000556412 NOS1P29475 1434 aa20.6■□□□□ 0.89
VIPAS39-208ENST00000556412 DHX57Q6P158 1386 aaKnown RBP20.6■□□□□ 0.89
VIPAS39-208ENST00000556412 PREX1Q8TCU6 1659 aa20.58■□□□□ 0.88
VIPAS39-208ENST00000556412 PTPRTO14522 1441 aa20.57■□□□□ 0.88
VIPAS39-208ENST00000556412 CHGAP10645 457 aaKnown RBP20.56■□□□□ 0.88
VIPAS39-208ENST00000556412 UHRF1BP1Q6BDS2 1440 aa20.56■□□□□ 0.88
VIPAS39-208ENST00000556412 PLA2R1Q13018 1463 aa20.56■□□□□ 0.88
VIPAS39-208ENST00000556412 IDI1Q13907 227 aa20.55■□□□□ 0.88
VIPAS39-208ENST00000556412 SLC52A1Q9NWF4 448 aa20.55■□□□□ 0.88
VIPAS39-208ENST00000556412 STAG3Q9UJ98 1225 aa20.55■□□□□ 0.88
VIPAS39-208ENST00000556412 SYNMO15061 1565 aa20.55■□□□□ 0.88
VIPAS39-208ENST00000556412 UGGT1Q9NYU2 1555 aa20.55■□□□□ 0.88
VIPAS39-208ENST00000556412 CCDC144AA2RUR9 1427 aa20.53■□□□□ 0.88
VIPAS39-208ENST00000556412 NLRP1Q9C000 1473 aa20.53■□□□□ 0.88
VIPAS39-208ENST00000556412 TRPM2O94759 1503 aa20.53■□□□□ 0.88
VIPAS39-208ENST00000556412 ANKRD30BQ9BXX2 1392 aa20.52■□□□□ 0.87
VIPAS39-208ENST00000556412 CCER1Q8TC90 406 aaPredicted RBP20.51■□□□□ 0.87
VIPAS39-208ENST00000556412 MYO3AQ8NEV4 1616 aa20.51■□□□□ 0.87
VIPAS39-208ENST00000556412 SPHKAPQ2M3C7 1700 aa20.5■□□□□ 0.87
VIPAS39-208ENST00000556412 CFAP65Q6ZU64 1925 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-208ENST00000556412 A2ML1A8K2U0 1454 aa20.48■□□□□ 0.87
VIPAS39-208ENST00000556412 HSPA2P54652 639 aa20.47■□□□□ 0.87
VIPAS39-208ENST00000556412 CEP170BQ9Y4F5 1589 aaPredicted RBP20.47■□□□□ 0.87
VIPAS39-208ENST00000556412 CLTCL1P53675 1640 aa20.46■□□□□ 0.87
VIPAS39-208ENST00000556412 LMTK3Q96Q04 1460 aa20.45■□□□□ 0.86
VIPAS39-208ENST00000556412 NEUROD1Q13562 356 aa20.45■□□□□ 0.86
VIPAS39-208ENST00000556412 ZNF326Q5BKZ1 582 aaKnown RBP20.45■□□□□ 0.86
VIPAS39-208ENST00000556412 SIN3AQ96ST3 1273 aa20.45■□□□□ 0.86
VIPAS39-208ENST00000556412 THEMISQ8N1K5 641 aaPredicted RBP20.44■□□□□ 0.86
VIPAS39-208ENST00000556412 PIK3C2BO00750 1634 aa20.44■□□□□ 0.86
VIPAS39-208ENST00000556412 RGL3Q3MIN7 710 aa20.43■□□□□ 0.86
VIPAS39-208ENST00000556412 ADGRB3O60242 1522 aa20.42■□□□□ 0.86
VIPAS39-208ENST00000556412 ZNF142P52746 1687 aaPredicted RBP20.38■□□□□ 0.85
VIPAS39-208ENST00000556412 NUTM2DQ5VT03 806 aaPredicted RBP20.38■□□□□ 0.85
VIPAS39-208ENST00000556412 SETD1BQ9UPS6 1966 aaKnown RBP20.37■□□□□ 0.85
VIPAS39-208ENST00000556412 TMEM2Q9UHN6 1383 aa20.37■□□□□ 0.85
VIPAS39-208ENST00000556412 TMEM131LA2VDJ0 1609 aa20.36■□□□□ 0.85
VIPAS39-208ENST00000556412 SENP3Q9H4L4 574 aaPredicted RBP20.36■□□□□ 0.85
VIPAS39-208ENST00000556412 UBR1Q8IWV7 1749 aa20.36■□□□□ 0.85
VIPAS39-208ENST00000556412 SPATA31E1Q6ZUB1 1445 aa20.35■□□□□ 0.85
VIPAS39-208ENST00000556412 PPP1R15AO75807 674 aaPredicted RBP20.35■□□□□ 0.85
VIPAS39-208ENST00000556412 EID1Q9Y6B2 187 aa20.35■□□□□ 0.85
VIPAS39-208ENST00000556412 TXNDC2Q86VQ3 553 aa20.34■□□□□ 0.85
VIPAS39-208ENST00000556412 RIMS2Q9UQ26 1411 aa20.34■□□□□ 0.85
VIPAS39-208ENST00000556412 ANKLE2Q86XL3 938 aa20.34■□□□□ 0.85
VIPAS39-208ENST00000556412 CLSPNQ9HAW4 1339 aa20.34■□□□□ 0.85
VIPAS39-208ENST00000556412 NCKAP5LQ9HCH0 1330 aa20.33■□□□□ 0.84
VIPAS39-208ENST00000556412 HDGFP51858 240 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms