RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 LTBP4Q8N2S1 1624 aa17.43■□□□□ 0.38
SYNE2-221ENST00000556342 DISP3Q9P2K9 1392 aa17.42■□□□□ 0.38
SYNE2-221ENST00000556342 MROH2AA6NES4 1674 aa17.42■□□□□ 0.38
SYNE2-221ENST00000556342 CFDP1Q9UEE9 299 aaPredicted RBP17.41■□□□□ 0.38
SYNE2-221ENST00000556342 PLEKHH2Q8IVE3 1493 aa17.41■□□□□ 0.38
SYNE2-221ENST00000556342 ATP7AQ04656 1500 aa17.41■□□□□ 0.38
SYNE2-221ENST00000556342 CCNB3Q8WWL7 1395 aa17.4■□□□□ 0.38
SYNE2-221ENST00000556342 CAMSAP1Q5T5Y3 1602 aa17.39■□□□□ 0.38
SYNE2-221ENST00000556342 A2MP01023 1474 aa17.39■□□□□ 0.37
SYNE2-221ENST00000556342 IQSEC2Q5JU85 1478 aa17.39■□□□□ 0.37
SYNE2-221ENST00000556342 PLXNC1O60486 1568 aa17.39■□□□□ 0.37
SYNE2-221ENST00000556342 INO80Q9ULG1 1556 aaPredicted RBP17.38■□□□□ 0.37
SYNE2-221ENST00000556342 SUPT6HQ7KZ85 1726 aaKnown RBP17.38■□□□□ 0.37
SYNE2-221ENST00000556342 ILDR2Q71H61 639 aa17.37■□□□□ 0.37
SYNE2-221ENST00000556342 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
SYNE2-221ENST00000556342 NCKAP5LQ9HCH0 1330 aa17.35■□□□□ 0.37
SYNE2-221ENST00000556342 PTPRKQ15262 1439 aa17.35■□□□□ 0.37
SYNE2-221ENST00000556342 CLTCQ00610 1675 aaKnown RBP17.34■□□□□ 0.37
SYNE2-221ENST00000556342 GGT6Q6P531 493 aa17.34■□□□□ 0.37
SYNE2-221ENST00000556342 PLA2R1Q13018 1463 aa17.33■□□□□ 0.37
SYNE2-221ENST00000556342 MYO3AQ8NEV4 1616 aa17.32■□□□□ 0.36
SYNE2-221ENST00000556342 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-221ENST00000556342 PKD2Q13563 968 aa17.32■□□□□ 0.36
SYNE2-221ENST00000556342 ZNF142P52746 1687 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-221ENST00000556342 ZNF644Q9H582 1327 aaPredicted RBP17.31■□□□□ 0.36
SYNE2-221ENST00000556342 SPATA31D1Q6ZQQ2 1576 aa17.31■□□□□ 0.36
SYNE2-221ENST00000556342 CEP170BQ9Y4F5 1589 aaPredicted RBP17.31■□□□□ 0.36
SYNE2-221ENST00000556342 TCOF1Q13428 1488 aaKnown RBP17.31■□□□□ 0.36
SYNE2-221ENST00000556342 MBD5Q9P267 1494 aa17.31■□□□□ 0.36
SYNE2-221ENST00000556342 SOCS7O14512 581 aa17.3■□□□□ 0.36
SYNE2-221ENST00000556342 TIAM1Q13009 1591 aa17.3■□□□□ 0.36
SYNE2-221ENST00000556342 EHBP1L1Q8N3D4 1523 aa17.28■□□□□ 0.36
SYNE2-221ENST00000556342 ADGBQ8N7X0 1667 aa17.28■□□□□ 0.36
SYNE2-221ENST00000556342 RTEL1-TNFRSF6BF6WH68 1400 aa17.28■□□□□ 0.36
SYNE2-221ENST00000556342 AKT1S1Q96B36 256 aa17.27■□□□□ 0.36
SYNE2-221ENST00000556342 UBAP1LF5GYI3 381 aa17.26■□□□□ 0.35
SYNE2-221ENST00000556342 CEP162Q5TB80 1403 aa17.26■□□□□ 0.35
SYNE2-221ENST00000556342 SPDYE2BA6NHP3 402 aa17.25■□□□□ 0.35
SYNE2-221ENST00000556342 SPDYE6P0CI01 402 aa17.25■□□□□ 0.35
SYNE2-221ENST00000556342 SPDYE2Q495Y8 402 aa17.25■□□□□ 0.35
SYNE2-221ENST00000556342 DHX29Q7Z478 1369 aaKnown RBP17.25■□□□□ 0.35
SYNE2-221ENST00000556342 A2ML1A8K2U0 1454 aa17.24■□□□□ 0.35
SYNE2-221ENST00000556342 CCDC141Q6ZP82 1450 aa17.21■□□□□ 0.35
SYNE2-221ENST00000556342 KIF3BO15066 747 aa17.21■□□□□ 0.35
SYNE2-221ENST00000556342 DNMT1P26358 1616 aaKnown RBP17.21■□□□□ 0.35
SYNE2-221ENST00000556342 TNRQ92752 1358 aa17.2■□□□□ 0.34
SYNE2-221ENST00000556342 FBXO31Q5XUX0 539 aaPredicted RBP17.19■□□□□ 0.34
SYNE2-221ENST00000556342 PZPP20742 1482 aa17.18■□□□□ 0.34
SYNE2-221ENST00000556342 KDM5DQ9BY66 1539 aa17.18■□□□□ 0.34
SYNE2-221ENST00000556342 FAM135AQ9P2D6 1515 aa17.18■□□□□ 0.34
SYNE2-221ENST00000556342 CAMSAP2Q08AD1 1489 aa17.18■□□□□ 0.34
SYNE2-221ENST00000556342 NCOA2Q15596 1464 aa17.18■□□□□ 0.34
SYNE2-221ENST00000556342 RSPH4AQ5TD94 716 aa17.17■□□□□ 0.34
SYNE2-221ENST00000556342 WASHC2CQ9Y4E1 1318 aa17.16■□□□□ 0.34
SYNE2-221ENST00000556342 NEURL4Q96JN8 1562 aa17.15■□□□□ 0.34
SYNE2-221ENST00000556342 CPS1P31327 1500 aa17.13■□□□□ 0.33
SYNE2-221ENST00000556342 MIA2Q96PC5 1412 aa17.13■□□□□ 0.33
SYNE2-221ENST00000556342 SHANK2Q9UPX8 1470 aa17.12■□□□□ 0.33
SYNE2-221ENST00000556342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.12■□□□□ 0.33
SYNE2-221ENST00000556342 POLR1AO95602 1720 aaPredicted RBP17.11■□□□□ 0.33
SYNE2-221ENST00000556342 TSPY4P0CV99 314 aa17.11■□□□□ 0.33
SYNE2-221ENST00000556342 TSPY10P0CW01 314 aa17.11■□□□□ 0.33
SYNE2-221ENST00000556342 ANKLE2Q86XL3 938 aa17.11■□□□□ 0.33
SYNE2-221ENST00000556342 THEMISQ8N1K5 641 aaPredicted RBP17.11■□□□□ 0.33
SYNE2-221ENST00000556342 NLRP1Q9C000 1473 aa17.11■□□□□ 0.33
SYNE2-221ENST00000556342 ARHGEF5Q12774 1597 aa17.11■□□□□ 0.33
SYNE2-221ENST00000556342 TOM1O60784 492 aa17.09■□□□□ 0.33
SYNE2-221ENST00000556342 HSPA1LP34931 641 aa17.09■□□□□ 0.33
SYNE2-221ENST00000556342 PIP4K2BP78356 416 aa17.09■□□□□ 0.33
SYNE2-221ENST00000556342 ZNF692Q9BU19 519 aaPredicted RBP17.09■□□□□ 0.33
SYNE2-221ENST00000556342 UGGT1Q9NYU2 1555 aa17.08■□□□□ 0.32
SYNE2-221ENST00000556342 NPHP4O75161 1426 aaPredicted RBP17.08■□□□□ 0.32
SYNE2-221ENST00000556342 SSUH2Q9Y2M2 353 aa17.08■□□□□ 0.32
SYNE2-221ENST00000556342 VWDEQ8N2E2 1590 aa17.07■□□□□ 0.32
SYNE2-221ENST00000556342 MED14O60244 1454 aa17.07■□□□□ 0.32
SYNE2-221ENST00000556342 REM2Q8IYK8 340 aaPredicted RBP17.07■□□□□ 0.32
SYNE2-221ENST00000556342 DEPDC5O75140 1603 aa17.05■□□□□ 0.32
SYNE2-221ENST00000556342 ABCC3O15438 1527 aa17.05■□□□□ 0.32
SYNE2-221ENST00000556342 LRRC9Q6ZRR7 1453 aa17.05■□□□□ 0.32
SYNE2-221ENST00000556342 RNF17Q9BXT8 1623 aaKnown RBP17.04■□□□□ 0.32
SYNE2-221ENST00000556342 MAST1Q9Y2H9 1570 aa17.03■□□□□ 0.32
SYNE2-221ENST00000556342 MED1Q15648 1581 aaPredicted RBP17.02■□□□□ 0.32
SYNE2-221ENST00000556342 ERVK-7P63135 1459 aa17.02■□□□□ 0.32
SYNE2-221ENST00000556342 VPS8Q8N3P4 1428 aa17.02■□□□□ 0.31
SYNE2-221ENST00000556342 ZC3H13Q5T200 1668 aaKnown RBP17.01■□□□□ 0.31
SYNE2-221ENST00000556342 EIF2AK4Q9P2K8 1649 aaKnown RBP16.99■□□□□ 0.31
SYNE2-221ENST00000556342 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
SYNE2-221ENST00000556342 IQGAP1P46940 1657 aa16.99■□□□□ 0.31
SYNE2-221ENST00000556342 MROH1Q8NDA8 1641 aa16.99■□□□□ 0.31
SYNE2-221ENST00000556342 MYOM3Q5VTT5 1437 aa16.97■□□□□ 0.31
SYNE2-221ENST00000556342 KANK4Q5T7N3 995 aaPredicted RBP16.97■□□□□ 0.31
SYNE2-221ENST00000556342 LRRC7Q96NW7 1537 aa16.96■□□□□ 0.31
SYNE2-221ENST00000556342 MAP3K1Q13233 1512 aa16.96■□□□□ 0.3
SYNE2-221ENST00000556342 DUOX2Q9NRD8 1548 aa16.95■□□□□ 0.3
SYNE2-221ENST00000556342 CHRDL2Q6WN34 429 aa16.94■□□□□ 0.3
SYNE2-221ENST00000556342 SCAF11Q99590 1463 aaKnown RBP16.93■□□□□ 0.3
SYNE2-221ENST00000556342 STRCP1A6NGW2 1772 aa16.93■□□□□ 0.3
SYNE2-221ENST00000556342 SYNMO15061 1565 aa16.93■□□□□ 0.3
SYNE2-221ENST00000556342 KIF15Q9NS87 1388 aa16.92■□□□□ 0.3
SYNE2-221ENST00000556342 ARHGAP31Q2M1Z3 1444 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms