RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 SETD1BQ9UPS6 1966 aaKnown RBP31.76■■■□□ 2.68
VTI1B-205ENST00000555543 KIF15Q9NS87 1388 aa31.76■■■□□ 2.67
VTI1B-205ENST00000555543 KDM5DQ9BY66 1539 aa31.75■■■□□ 2.67
VTI1B-205ENST00000555543 NPATQ14207 1427 aa31.75■■■□□ 2.67
VTI1B-205ENST00000555543 FAM135AQ9P2D6 1515 aa31.74■■■□□ 2.67
VTI1B-205ENST00000555543 FAM50AQ14320 339 aaKnown RBP31.73■■■□□ 2.67
VTI1B-205ENST00000555543 PTPRKQ15262 1439 aa31.72■■■□□ 2.67
VTI1B-205ENST00000555543 MROH1Q8NDA8 1641 aa31.71■■■□□ 2.67
VTI1B-205ENST00000555543 RRP7BPQ9NSQ0 103 aa31.7■■■□□ 2.67
VTI1B-205ENST00000555543 CHIC2Q9UKJ5 165 aa31.7■■■□□ 2.67
VTI1B-205ENST00000555543 ERBINQ96RT1 1412 aa31.66■■■□□ 2.66
VTI1B-205ENST00000555543 WASHC2CQ9Y4E1 1318 aa31.66■■■□□ 2.66
VTI1B-205ENST00000555543 ANKRD30AQ9BXX3 1397 aa31.65■■■□□ 2.66
VTI1B-205ENST00000555543 NCOA1Q15788 1441 aa31.65■■■□□ 2.66
VTI1B-205ENST00000555543 ADGRL2O95490 1459 aa31.65■■■□□ 2.66
VTI1B-205ENST00000555543 ABCC3O15438 1527 aa31.64■■■□□ 2.66
VTI1B-205ENST00000555543 MYO3AQ8NEV4 1616 aa31.64■■■□□ 2.65
VTI1B-205ENST00000555543 PZPP20742 1482 aa31.62■■■□□ 2.65
VTI1B-205ENST00000555543 ZC3H13Q5T200 1668 aaKnown RBP31.61■■■□□ 2.65
VTI1B-205ENST00000555543 PRDM15P57071 1507 aaPredicted RBP31.59■■■□□ 2.65
VTI1B-205ENST00000555543 CEP152O94986 1710 aa31.58■■■□□ 2.65
VTI1B-205ENST00000555543 ZNF142P52746 1687 aaPredicted RBP31.57■■■□□ 2.65
VTI1B-205ENST00000555543 FBXO31Q5XUX0 539 aaPredicted RBP31.57■■■□□ 2.64
VTI1B-205ENST00000555543 STRCQ7RTU9 1775 aa31.57■■■□□ 2.64
VTI1B-205ENST00000555543 DEPDC5O75140 1603 aa31.57■■■□□ 2.64
VTI1B-205ENST00000555543 CEP170BQ9Y4F5 1589 aaPredicted RBP31.54■■■□□ 2.64
VTI1B-205ENST00000555543 CAMSAP1Q5T5Y3 1602 aa31.52■■■□□ 2.64
VTI1B-205ENST00000555543 TNRQ92752 1358 aa31.51■■■□□ 2.63
VTI1B-205ENST00000555543 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.49■■■□□ 2.63
VTI1B-205ENST00000555543 A2ML1A8K2U0 1454 aa31.46■■■□□ 2.63
VTI1B-205ENST00000555543 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.46■■■□□ 2.632e-8■■■□□ 15.5
VTI1B-205ENST00000555543 VWDEQ8N2E2 1590 aa31.45■■■□□ 2.63
VTI1B-205ENST00000555543 RRBP1Q9P2E9 1410 aaKnown RBP31.45■■■□□ 2.63
VTI1B-205ENST00000555543 ANKRD50Q9ULJ7 1429 aa31.45■■■□□ 2.63
VTI1B-205ENST00000555543 SPATA31D1Q6ZQQ2 1576 aa31.44■■■□□ 2.62
VTI1B-205ENST00000555543 ERVK-7P63135 1459 aa31.43■■■□□ 2.62
VTI1B-205ENST00000555543 ROCK1Q13464 1354 aa31.43■■■□□ 2.62
VTI1B-205ENST00000555543 ITGAEP38570 1179 aa31.42■■■□□ 2.62
VTI1B-205ENST00000555543 KANK1Q14678 1352 aa31.4■■■□□ 2.62
VTI1B-205ENST00000555543 ARHGAP31Q2M1Z3 1444 aa31.39■■■□□ 2.62
VTI1B-205ENST00000555543 LMTK2Q8IWU2 1503 aa31.39■■■□□ 2.61
VTI1B-205ENST00000555543 PLA2R1Q13018 1463 aa31.38■■■□□ 2.61
VTI1B-205ENST00000555543 NLRP1Q9C000 1473 aa31.37■■■□□ 2.61
VTI1B-205ENST00000555543 PTPRTO14522 1441 aa31.35■■■□□ 2.61
VTI1B-205ENST00000555543 CFAP65Q6ZU64 1925 aaKnown RBP31.34■■■□□ 2.61
VTI1B-205ENST00000555543 DMRT2Q9Y5R5 561 aa31.34■■■□□ 2.61
VTI1B-205ENST00000555543 NCKAP5LQ9HCH0 1330 aa31.32■■■□□ 2.6
VTI1B-205ENST00000555543 UNC13BO14795 1591 aa31.32■■■□□ 2.6
VTI1B-205ENST00000555543 EFCAB6Q5THR3 1501 aa31.31■■■□□ 2.6
VTI1B-205ENST00000555543 UGGT1Q9NYU2 1555 aa31.3■■■□□ 2.6
VTI1B-205ENST00000555543 PKD2Q13563 968 aa31.25■■■□□ 2.59
VTI1B-205ENST00000555543 ILDR1Q86SU0 546 aaPredicted RBP31.23■■■□□ 2.59
VTI1B-205ENST00000555543 POLR1AO95602 1720 aaPredicted RBP31.22■■■□□ 2.59
VTI1B-205ENST00000555543 TET3O43151 1660 aa31.22■■■□□ 2.59
VTI1B-205ENST00000555543 NEURL4Q96JN8 1562 aa31.22■■■□□ 2.59
VTI1B-205ENST00000555543 SYNMO15061 1565 aa31.21■■■□□ 2.59
VTI1B-205ENST00000555543 UBR1Q8IWV7 1749 aa31.21■■■□□ 2.59
VTI1B-205ENST00000555543 THEMISQ8N1K5 641 aaPredicted RBP31.19■■■□□ 2.58
VTI1B-205ENST00000555543 NOS1P29475 1434 aa31.18■■■□□ 2.58
VTI1B-205ENST00000555543 IQGAP3Q86VI3 1631 aa31.18■■■□□ 2.58
VTI1B-205ENST00000555543 GCC2Q8IWJ2 1684 aa31.17■■■□□ 2.58
VTI1B-205ENST00000555543 PIK3C2BO00750 1634 aa31.16■■■□□ 2.58
VTI1B-205ENST00000555543 RPRD2Q5VT52 1461 aaKnown RBP31.15■■■□□ 2.58
VTI1B-205ENST00000555543 NAIPQ13075 1403 aa31.15■■■□□ 2.58
VTI1B-205ENST00000555543 CERKQ8TCT0 537 aa31.14■■■□□ 2.58
VTI1B-205ENST00000555543 LTBP4Q8N2S1 1624 aa31.13■■■□□ 2.57
VTI1B-205ENST00000555543 E9PCH4 1651 aa31.11■■■□□ 2.57
VTI1B-205ENST00000555543 NUP155O75694 1391 aa31.11■■■□□ 2.57
VTI1B-205ENST00000555543 ANKLE2Q86XL3 938 aa31.1■■■□□ 2.57
VTI1B-205ENST00000555543 IDI1Q13907 227 aa31.08■■■□□ 2.57
VTI1B-205ENST00000555543 FBXO41Q8TF61 875 aa31.08■■■□□ 2.57
VTI1B-205ENST00000555543 MED14O60244 1454 aa31.08■■■□□ 2.57
VTI1B-205ENST00000555543 ZNF335Q9H4Z2 1342 aaPredicted RBP31.07■■■□□ 2.56
VTI1B-205ENST00000555543 ARHGAP23Q9P227 1491 aa31.07■■■□□ 2.56
VTI1B-205ENST00000555543 HFM1A2PYH4 1435 aa31.07■■■□□ 2.56
VTI1B-205ENST00000555543 SLIT1O75093 1534 aa31.06■■■□□ 2.56
VTI1B-205ENST00000555543 KDM5AP29375 1690 aaKnown RBP31.05■■■□□ 2.56
VTI1B-205ENST00000555543 NPHP4O75161 1426 aaPredicted RBP31.05■■■□□ 2.56
VTI1B-205ENST00000555543 ADGRB3O60242 1522 aa31.03■■■□□ 2.56
VTI1B-205ENST00000555543 IQGAP1P46940 1657 aa31.03■■■□□ 2.56
VTI1B-205ENST00000555543 SCAF11Q99590 1463 aaKnown RBP31.01■■■□□ 2.56
VTI1B-205ENST00000555543 SLC52A1Q9NWF4 448 aa30.99■■■□□ 2.55
VTI1B-205ENST00000555543 TMEM2Q9UHN6 1383 aa30.99■■■□□ 2.55
VTI1B-205ENST00000555543 LTKP29376 864 aa30.98■■■□□ 2.55
VTI1B-205ENST00000555543 STAG3Q9UJ98 1225 aa30.98■■■□□ 2.55
VTI1B-205ENST00000555543 TXNDC2Q86VQ3 553 aa30.94■■■□□ 2.54
VTI1B-205ENST00000555543 MYO5BQ9ULV0 1848 aa30.92■■■□□ 2.54
VTI1B-205ENST00000555543 TMEM131LA2VDJ0 1609 aa30.91■■■□□ 2.54
VTI1B-205ENST00000555543 IQSEC2Q5JU85 1478 aa30.89■■■□□ 2.54
VTI1B-205ENST00000555543 EID1Q9Y6B2 187 aa30.89■■■□□ 2.54
VTI1B-205ENST00000555543 SPHKAPQ2M3C7 1700 aa30.88■■■□□ 2.53
VTI1B-205ENST00000555543 ZFYVE9O95405 1425 aa30.84■■■□□ 2.53
VTI1B-205ENST00000555543 TRIM52Q96A61 297 aa30.84■■■□□ 2.53
VTI1B-205ENST00000555543 CPS1P31327 1500 aa30.83■■■□□ 2.53
VTI1B-205ENST00000555543 STRCP1A6NGW2 1772 aa30.83■■■□□ 2.53
VTI1B-205ENST00000555543 RIMS2Q9UQ26 1411 aa30.8■■■□□ 2.52
VTI1B-205ENST00000555543 CHGAP10645 457 aaKnown RBP30.79■■■□□ 2.52
VTI1B-205ENST00000555543 TRPM2O94759 1503 aa30.78■■■□□ 2.52
VTI1B-205ENST00000555543 CLTCL1P53675 1640 aa30.76■■■□□ 2.52
VTI1B-205ENST00000555543 SLC4A1APQ9BWU0 796 aaKnown RBP30.73■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms