RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 FAM135AQ9P2D6 1515 aa16.4■□□□□ 0.22
SHMT2-218ENST00000555213 RNF17Q9BXT8 1623 aaKnown RBP16.4■□□□□ 0.22
SHMT2-218ENST00000555213 FER1L4A9Z1Z3 1794 aa16.39■□□□□ 0.21
SHMT2-218ENST00000555213 CNTLNQ9NXG0 1405 aa16.39■□□□□ 0.21
SHMT2-218ENST00000555213 GGT6Q6P531 493 aa16.39■□□□□ 0.21
SHMT2-218ENST00000555213 PPP6R1Q9UPN7 881 aa16.39■□□□□ 0.21
SHMT2-218ENST00000555213 HFM1A2PYH4 1435 aa16.37■□□□□ 0.21
SHMT2-218ENST00000555213 RIMS1Q86UR5 1692 aaKnown RBP16.37■□□□□ 0.21
SHMT2-218ENST00000555213 GCC2Q8IWJ2 1684 aa16.37■□□□□ 0.21
SHMT2-218ENST00000555213 PRDM15P57071 1507 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-218ENST00000555213 KDM5DQ9BY66 1539 aa16.36■□□□□ 0.21
SHMT2-218ENST00000555213 KANK1Q14678 1352 aa16.36■□□□□ 0.21
SHMT2-218ENST00000555213 DEPDC5O75140 1603 aa16.34■□□□□ 0.21
SHMT2-218ENST00000555213 NAIPQ13075 1403 aa16.34■□□□□ 0.21
SHMT2-218ENST00000555213 PTPRMP28827 1452 aa16.34■□□□□ 0.21
SHMT2-218ENST00000555213 ZC3H13Q5T200 1668 aaKnown RBP16.34■□□□□ 0.21
SHMT2-218ENST00000555213 WASHC2CQ9Y4E1 1318 aa16.33■□□□□ 0.2
SHMT2-218ENST00000555213 MROH1Q8NDA8 1641 aa16.32■□□□□ 0.2
SHMT2-218ENST00000555213 MROH2AA6NES4 1674 aa16.31■□□□□ 0.2
SHMT2-218ENST00000555213 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHMT2-218ENST00000555213 CLTCQ00610 1675 aaKnown RBP16.3■□□□□ 0.2
SHMT2-218ENST00000555213 UNC13BO14795 1591 aa16.3■□□□□ 0.2
SHMT2-218ENST00000555213 ABCC3O15438 1527 aa16.3■□□□□ 0.2
SHMT2-218ENST00000555213 ACIN1Q9UKV3 1341 aaKnown RBP16.27■□□□□ 0.2
SHMT2-218ENST00000555213 ZMYM3Q14202 1370 aa16.26■□□□□ 0.19
SHMT2-218ENST00000555213 VWDEQ8N2E2 1590 aa16.26■□□□□ 0.19
SHMT2-218ENST00000555213 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
SHMT2-218ENST00000555213 SETD5Q9C0A6 1442 aa16.26■□□□□ 0.19
SHMT2-218ENST00000555213 LMTK2Q8IWU2 1503 aa16.25■□□□□ 0.19
SHMT2-218ENST00000555213 CAMSAP1Q5T5Y3 1602 aa16.25■□□□□ 0.19
SHMT2-218ENST00000555213 CEP152O94986 1710 aa16.25■□□□□ 0.19
SHMT2-218ENST00000555213 NUP155O75694 1391 aa16.25■□□□□ 0.19
SHMT2-218ENST00000555213 C3P01024 1663 aa16.24■□□□□ 0.19
SHMT2-218ENST00000555213 PZPP20742 1482 aa16.24■□□□□ 0.19
SHMT2-218ENST00000555213 IQGAP3Q86VI3 1631 aa16.23■□□□□ 0.19
SHMT2-218ENST00000555213 NPATQ14207 1427 aa16.23■□□□□ 0.19
SHMT2-218ENST00000555213 EFCAB6Q5THR3 1501 aa16.22■□□□□ 0.19
SHMT2-218ENST00000555213 TET3O43151 1660 aa16.21■□□□□ 0.19
SHMT2-218ENST00000555213 ARHGAP31Q2M1Z3 1444 aa16.21■□□□□ 0.19
SHMT2-218ENST00000555213 CEBPAP49715 358 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-218ENST00000555213 FBXO41Q8TF61 875 aa16.21■□□□□ 0.19
SHMT2-218ENST00000555213 TRIM52Q96A61 297 aa16.21■□□□□ 0.19
SHMT2-218ENST00000555213 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
SHMT2-218ENST00000555213 RPRD2Q5VT52 1461 aaKnown RBP16.19■□□□□ 0.18
SHMT2-218ENST00000555213 ERVK-7P63135 1459 aa16.16■□□□□ 0.18
SHMT2-218ENST00000555213 TNRQ92752 1358 aa16.16■□□□□ 0.18
SHMT2-218ENST00000555213 UHRF1BP1Q6BDS2 1440 aa16.16■□□□□ 0.18
SHMT2-218ENST00000555213 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
SHMT2-218ENST00000555213 SPATA31D1Q6ZQQ2 1576 aa16.15■□□□□ 0.18
SHMT2-218ENST00000555213 HRCP23327 699 aa16.14■□□□□ 0.17
SHMT2-218ENST00000555213 MYO3AQ8NEV4 1616 aa16.13■□□□□ 0.17
SHMT2-218ENST00000555213 FBXO31Q5XUX0 539 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-218ENST00000555213 SLC4A1APQ9BWU0 796 aaKnown RBP16.13■□□□□ 0.17
SHMT2-218ENST00000555213 NLRP1Q9C000 1473 aa16.12■□□□□ 0.17
SHMT2-218ENST00000555213 E9PCH4 1651 aa16.11■□□□□ 0.17
SHMT2-218ENST00000555213 NOS1P29475 1434 aa16.1■□□□□ 0.17
SHMT2-218ENST00000555213 LMTK3Q96Q04 1460 aa16.1■□□□□ 0.17
SHMT2-218ENST00000555213 SETD1BQ9UPS6 1966 aaKnown RBP16.09■□□□□ 0.17
SHMT2-218ENST00000555213 CEP170BQ9Y4F5 1589 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-218ENST00000555213 ZNF142P52746 1687 aaPredicted RBP16.08■□□□□ 0.17
SHMT2-218ENST00000555213 PKD2Q13563 968 aa16.08■□□□□ 0.16
SHMT2-218ENST00000555213 A2ML1A8K2U0 1454 aa16.08■□□□□ 0.16
SHMT2-218ENST00000555213 MPHOSPH9Q99550 1183 aa16.07■□□□□ 0.16
SHMT2-218ENST00000555213 SYNMO15061 1565 aa16.06■□□□□ 0.16
SHMT2-218ENST00000555213 SLC52A1Q9NWF4 448 aa16.05■□□□□ 0.16
SHMT2-218ENST00000555213 SPHKAPQ2M3C7 1700 aa16.05■□□□□ 0.16
SHMT2-218ENST00000555213 TRPM2O94759 1503 aa16.04■□□□□ 0.16
SHMT2-218ENST00000555213 PTPRTO14522 1441 aa16.03■□□□□ 0.16
SHMT2-218ENST00000555213 STAG3Q9UJ98 1225 aa16.03■□□□□ 0.16
SHMT2-218ENST00000555213 UGGT1Q9NYU2 1555 aa16.03■□□□□ 0.16
SHMT2-218ENST00000555213 CFAP65Q6ZU64 1925 aaKnown RBP16.02■□□□□ 0.16
SHMT2-218ENST00000555213 ADGRB3O60242 1522 aa16.01■□□□□ 0.15
SHMT2-218ENST00000555213 PIK3C2BO00750 1634 aa16.01■□□□□ 0.15
SHMT2-218ENST00000555213 THEMISQ8N1K5 641 aaPredicted RBP16■□□□□ 0.15
SHMT2-218ENST00000555213 KDM5AP29375 1690 aaKnown RBP15.99■□□□□ 0.15
SHMT2-218ENST00000555213 IDI1Q13907 227 aa15.99■□□□□ 0.15
SHMT2-218ENST00000555213 CCDC144AA2RUR9 1427 aa15.99■□□□□ 0.15
SHMT2-218ENST00000555213 DHX57Q6P158 1386 aaKnown RBP15.99■□□□□ 0.15
SHMT2-218ENST00000555213 PLA2R1Q13018 1463 aa15.98■□□□□ 0.15
SHMT2-218ENST00000555213 HSPA2P54652 639 aa15.98■□□□□ 0.15
SHMT2-218ENST00000555213 FOXD1Q16676 465 aa15.98■□□□□ 0.15
SHMT2-218ENST00000555213 CCER1Q8TC90 406 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-218ENST00000555213 UBR1Q8IWV7 1749 aa15.97■□□□□ 0.15
SHMT2-218ENST00000555213 CHGAP10645 457 aaKnown RBP15.96■□□□□ 0.15
SHMT2-218ENST00000555213 CLTCL1P53675 1640 aa15.96■□□□□ 0.15
SHMT2-218ENST00000555213 TMEM131LA2VDJ0 1609 aa15.93■□□□□ 0.14
SHMT2-218ENST00000555213 TMEM2Q9UHN6 1383 aa15.92■□□□□ 0.14
SHMT2-218ENST00000555213 EID1Q9Y6B2 187 aa15.92■□□□□ 0.14
SHMT2-218ENST00000555213 SLIT1O75093 1534 aa15.92■□□□□ 0.14
SHMT2-218ENST00000555213 ARHGAP23Q9P227 1491 aa15.91■□□□□ 0.14
SHMT2-218ENST00000555213 ANKRD30BQ9BXX2 1392 aa15.91■□□□□ 0.14
SHMT2-218ENST00000555213 ANKLE2Q86XL3 938 aa15.91■□□□□ 0.14
SHMT2-218ENST00000555213 KIF1BO60333 1816 aa15.9■□□□□ 0.14
SHMT2-218ENST00000555213 HDGFP51858 240 aaKnown RBP15.9■□□□□ 0.14
SHMT2-218ENST00000555213 SCAF11Q99590 1463 aaKnown RBP15.9■□□□□ 0.14
SHMT2-218ENST00000555213 POLR1AO95602 1720 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-218ENST00000555213 ZNF326Q5BKZ1 582 aaKnown RBP15.89■□□□□ 0.13
SHMT2-218ENST00000555213 DMRT2Q9Y5R5 561 aa15.89■□□□□ 0.13
SHMT2-218ENST00000555213 RIMS2Q9UQ26 1411 aa15.88■□□□□ 0.13
SHMT2-218ENST00000555213 PPP1R15AO75807 674 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms