RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CEP162Q5TB80 1403 aa18.23■□□□□ 0.51
VPS33B-204ENST00000554660 CAMSAP2Q08AD1 1489 aa18.22■□□□□ 0.51
VPS33B-204ENST00000554660 CCDC141Q6ZP82 1450 aa18.22■□□□□ 0.51
VPS33B-204ENST00000554660 DHX29Q7Z478 1369 aaKnown RBP18.22■□□□□ 0.51
VPS33B-204ENST00000554660 TNRQ92752 1358 aa18.22■□□□□ 0.51
VPS33B-204ENST00000554660 PZPP20742 1482 aa18.21■□□□□ 0.51
VPS33B-204ENST00000554660 FBXO31Q5XUX0 539 aaPredicted RBP18.21■□□□□ 0.51
VPS33B-204ENST00000554660 SCAF1Q9H7N4 1312 aaKnown RBP18.2■□□□□ 0.5
VPS33B-204ENST00000554660 KIF3BO15066 747 aa18.19■□□□□ 0.5
VPS33B-204ENST00000554660 NCOA2Q15596 1464 aa18.19■□□□□ 0.5
VPS33B-204ENST00000554660 CPS1P31327 1500 aa18.18■□□□□ 0.5
VPS33B-204ENST00000554660 FAM135AQ9P2D6 1515 aa18.18■□□□□ 0.5
VPS33B-204ENST00000554660 MED1Q15648 1581 aaPredicted RBP18.17■□□□□ 0.5
VPS33B-204ENST00000554660 PIP4K2BP78356 416 aa18.17■□□□□ 0.5
VPS33B-204ENST00000554660 SHANK2Q9UPX8 1470 aa18.17■□□□□ 0.5
VPS33B-204ENST00000554660 VWDEQ8N2E2 1590 aa18.16■□□□□ 0.5
VPS33B-204ENST00000554660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS33B-204ENST00000554660 HSPA1LP34931 641 aa18.15■□□□□ 0.5
VPS33B-204ENST00000554660 UGGT1Q9NYU2 1555 aa18.14■□□□□ 0.49
VPS33B-204ENST00000554660 WASHC2CQ9Y4E1 1318 aa18.14■□□□□ 0.49
VPS33B-204ENST00000554660 NLRP1Q9C000 1473 aa18.13■□□□□ 0.49
VPS33B-204ENST00000554660 ARHGEF5Q12774 1597 aa18.13■□□□□ 0.49
VPS33B-204ENST00000554660 NPHP4O75161 1426 aaPredicted RBP18.11■□□□□ 0.49
VPS33B-204ENST00000554660 MIA2Q96PC5 1412 aa18.11■□□□□ 0.49
VPS33B-204ENST00000554660 DEPDC5O75140 1603 aa18.11■□□□□ 0.49
VPS33B-204ENST00000554660 ALKQ9UM73 1620 aa18.11■□□□□ 0.49
VPS33B-204ENST00000554660 IQGAP1P46940 1657 aa18.1■□□□□ 0.49
VPS33B-204ENST00000554660 RNF17Q9BXT8 1623 aaKnown RBP18.1■□□□□ 0.49
VPS33B-204ENST00000554660 TOM1O60784 492 aa18.09■□□□□ 0.49
VPS33B-204ENST00000554660 ANKLE2Q86XL3 938 aa18.09■□□□□ 0.49
VPS33B-204ENST00000554660 ABCC3O15438 1527 aa18.08■□□□□ 0.49
VPS33B-204ENST00000554660 MED14O60244 1454 aa18.08■□□□□ 0.49
VPS33B-204ENST00000554660 ZC3H13Q5T200 1668 aaKnown RBP18.08■□□□□ 0.48
VPS33B-204ENST00000554660 THEMISQ8N1K5 641 aaPredicted RBP18.06■□□□□ 0.48
VPS33B-204ENST00000554660 STRCP1A6NGW2 1772 aa18.06■□□□□ 0.48
VPS33B-204ENST00000554660 MROH1Q8NDA8 1641 aa18.05■□□□□ 0.48
VPS33B-204ENST00000554660 RSPH4AQ5TD94 716 aa18.05■□□□□ 0.48
VPS33B-204ENST00000554660 MAST1Q9Y2H9 1570 aa18.04■□□□□ 0.48
VPS33B-204ENST00000554660 ERVK-7P63135 1459 aa18.04■□□□□ 0.48
VPS33B-204ENST00000554660 EIF2AK4Q9P2K8 1649 aaKnown RBP18.04■□□□□ 0.48
VPS33B-204ENST00000554660 SYNMO15061 1565 aa18.04■□□□□ 0.48
VPS33B-204ENST00000554660 TSPY4P0CV99 314 aa18.03■□□□□ 0.48
VPS33B-204ENST00000554660 TSPY10P0CW01 314 aa18.03■□□□□ 0.48
VPS33B-204ENST00000554660 CEP152O94986 1710 aa18.03■□□□□ 0.48
VPS33B-204ENST00000554660 SENP3Q9H4L4 574 aaPredicted RBP18.02■□□□□ 0.48
VPS33B-204ENST00000554660 LRRC7Q96NW7 1537 aa18.02■□□□□ 0.47
VPS33B-204ENST00000554660 LRRC9Q6ZRR7 1453 aa18.01■□□□□ 0.47
VPS33B-204ENST00000554660 UBR1Q8IWV7 1749 aa18■□□□□ 0.47
VPS33B-204ENST00000554660 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
VPS33B-204ENST00000554660 VPS8Q8N3P4 1428 aa17.98■□□□□ 0.47
VPS33B-204ENST00000554660 SCAF11Q99590 1463 aaKnown RBP17.96■□□□□ 0.47
VPS33B-204ENST00000554660 PRDM15P57071 1507 aaPredicted RBP17.94■□□□□ 0.46
VPS33B-204ENST00000554660 DUOX2Q9NRD8 1548 aa17.93■□□□□ 0.46
VPS33B-204ENST00000554660 MYOM3Q5VTT5 1437 aa17.93■□□□□ 0.46
VPS33B-204ENST00000554660 KANK4Q5T7N3 995 aaPredicted RBP17.92■□□□□ 0.46
VPS33B-204ENST00000554660 ARHGAP23Q9P227 1491 aa17.92■□□□□ 0.46
VPS33B-204ENST00000554660 SLIT1O75093 1534 aa17.92■□□□□ 0.46
VPS33B-204ENST00000554660 CROCC2H7BZ55 1655 aa17.91■□□□□ 0.46
VPS33B-204ENST00000554660 CFAP65Q6ZU64 1925 aaKnown RBP17.91■□□□□ 0.46
VPS33B-204ENST00000554660 XIRP1Q702N8 1843 aaKnown RBP17.9■□□□□ 0.46
VPS33B-204ENST00000554660 KIF15Q9NS87 1388 aa17.9■□□□□ 0.46
VPS33B-204ENST00000554660 LTKP29376 864 aa17.89■□□□□ 0.45
VPS33B-204ENST00000554660 PIK3C2BO00750 1634 aa17.89■□□□□ 0.45
VPS33B-204ENST00000554660 ERBINQ96RT1 1412 aa17.88■□□□□ 0.45
VPS33B-204ENST00000554660 ARHGAP31Q2M1Z3 1444 aa17.87■□□□□ 0.45
VPS33B-204ENST00000554660 MAP3K1Q13233 1512 aa17.87■□□□□ 0.45
VPS33B-204ENST00000554660 TXNDC2Q86VQ3 553 aa17.86■□□□□ 0.45
VPS33B-204ENST00000554660 ABCC5O15440 1437 aa17.85■□□□□ 0.45
VPS33B-204ENST00000554660 PTPN23Q9H3S7 1636 aa17.83■□□□□ 0.45
VPS33B-204ENST00000554660 RRP7BPQ9NSQ0 103 aa17.83■□□□□ 0.44
VPS33B-204ENST00000554660 TMEM2Q9UHN6 1383 aa17.82■□□□□ 0.44
VPS33B-204ENST00000554660 LOC105371045A0A1W2PR82 267 aa17.82■□□□□ 0.44
VPS33B-204ENST00000554660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.82■□□□□ 0.44
VPS33B-204ENST00000554660 EFCAB6Q5THR3 1501 aa17.82■□□□□ 0.44
VPS33B-204ENST00000554660 EID1Q9Y6B2 187 aa17.81■□□□□ 0.44
VPS33B-204ENST00000554660 DAPK1P53355 1430 aa17.81■□□□□ 0.44
VPS33B-204ENST00000554660 RGS17Q9UGC6 210 aaPredicted RBP17.8■□□□□ 0.44
VPS33B-204ENST00000554660 KDM5AP29375 1690 aaKnown RBP17.79■□□□□ 0.44
VPS33B-204ENST00000554660 TMEM94Q12767 1356 aa17.79■□□□□ 0.44
VPS33B-204ENST00000554660 KANK1Q14678 1352 aa17.78■□□□□ 0.44
VPS33B-204ENST00000554660 LMTK2Q8IWU2 1503 aa17.77■□□□□ 0.44
VPS33B-204ENST00000554660 ROBO1Q9Y6N7 1651 aa17.77■□□□□ 0.44
VPS33B-204ENST00000554660 STAG3Q9UJ98 1225 aa17.77■□□□□ 0.44
VPS33B-204ENST00000554660 ADGRB3O60242 1522 aa17.77■□□□□ 0.43
VPS33B-204ENST00000554660 FAM135BQ49AJ0 1406 aa17.76■□□□□ 0.43
VPS33B-204ENST00000554660 RBM33Q96EV2 1170 aaKnown RBP17.76■□□□□ 0.43
VPS33B-204ENST00000554660 FGD6Q6ZV73 1430 aa17.75■□□□□ 0.43
VPS33B-204ENST00000554660 TET3O43151 1660 aa17.75■□□□□ 0.43
VPS33B-204ENST00000554660 NWD1Q149M9 1564 aa17.74■□□□□ 0.43
VPS33B-204ENST00000554660 IDI1Q13907 227 aa17.74■□□□□ 0.43
VPS33B-204ENST00000554660 SLC26A8Q96RN1 970 aa17.74■□□□□ 0.43
VPS33B-204ENST00000554660 CHIC2Q9UKJ5 165 aa17.73■□□□□ 0.43
VPS33B-204ENST00000554660 NKTRP30414 1462 aaKnown RBP17.72■□□□□ 0.43
VPS33B-204ENST00000554660 ANKRD30AQ9BXX3 1397 aa17.72■□□□□ 0.43
VPS33B-204ENST00000554660 NOS1P29475 1434 aa17.72■□□□□ 0.43
VPS33B-204ENST00000554660 KCNA6P17658 529 aa17.71■□□□□ 0.43
VPS33B-204ENST00000554660 HRCP23327 699 aa17.71■□□□□ 0.43
VPS33B-204ENST00000554660 POTEAQ6S8J7 498 aa17.69■□□□□ 0.42
VPS33B-204ENST00000554660 PROSER2Q86WR7 435 aaPredicted RBP17.69■□□□□ 0.42
VPS33B-204ENST00000554660 SETD1AO15047 1707 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms