RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 KDM5DQ9BY66 1539 aa21.57■■□□□ 1.04
SHMT2-210ENST00000553950 PRDM15P57071 1507 aaPredicted RBP21.56■■□□□ 1.04
SHMT2-210ENST00000553950 FAM135AQ9P2D6 1515 aa21.55■■□□□ 1.04
SHMT2-210ENST00000553950 ZC3H13Q5T200 1668 aaKnown RBP21.54■■□□□ 1.04
SHMT2-210ENST00000553950 IQGAP3Q86VI3 1631 aa21.54■■□□□ 1.04
SHMT2-210ENST00000553950 MROH1Q8NDA8 1641 aa21.49■■□□□ 1.03
SHMT2-210ENST00000553950 KANK1Q14678 1352 aa21.48■■□□□ 1.03
SHMT2-210ENST00000553950 VWDEQ8N2E2 1590 aa21.46■■□□□ 1.03
SHMT2-210ENST00000553950 TET3O43151 1660 aa21.46■■□□□ 1.03
SHMT2-210ENST00000553950 SIGLEC1Q9BZZ2 1709 aa21.44■■□□□ 1.02
SHMT2-210ENST00000553950 CEP152O94986 1710 aa21.43■■□□□ 1.02
SHMT2-210ENST00000553950 KIF3BO15066 747 aa21.42■■□□□ 1.02
SHMT2-210ENST00000553950 LMTK2Q8IWU2 1503 aa21.42■■□□□ 1.02
SHMT2-210ENST00000553950 NUP155O75694 1391 aa21.41■■□□□ 1.02
SHMT2-210ENST00000553950 TRIM52Q96A61 297 aa21.41■■□□□ 1.02
SHMT2-210ENST00000553950 PZPP20742 1482 aa21.4■■□□□ 1.02
SHMT2-210ENST00000553950 CAMSAP1Q5T5Y3 1602 aa21.39■■□□□ 1.01
SHMT2-210ENST00000553950 DHX57Q6P158 1386 aaKnown RBP21.38■■□□□ 1.01
SHMT2-210ENST00000553950 EFCAB6Q5THR3 1501 aa21.38■■□□□ 1.01
SHMT2-210ENST00000553950 PPP6R1Q9UPN7 881 aa21.37■■□□□ 1.01
SHMT2-210ENST00000553950 ABCC3O15438 1527 aa21.37■■□□□ 1.01
SHMT2-210ENST00000553950 MROH2AA6NES4 1674 aa21.37■■□□□ 1.01
SHMT2-210ENST00000553950 FER1L4A9Z1Z3 1794 aa21.36■■□□□ 1.01
SHMT2-210ENST00000553950 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
SHMT2-210ENST00000553950 RPRD2Q5VT52 1461 aaKnown RBP21.33■■□□□ 1.01
SHMT2-210ENST00000553950 E9PCH4 1651 aa21.33■■□□□ 1
SHMT2-210ENST00000553950 CLTCQ00610 1675 aaKnown RBP21.33■■□□□ 1
SHMT2-210ENST00000553950 CNTLNQ9NXG0 1405 aa21.32■■□□□ 1
SHMT2-210ENST00000553950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.32■■□□□ 1
SHMT2-210ENST00000553950 SLC4A1APQ9BWU0 796 aaKnown RBP21.32■■□□□ 1
SHMT2-210ENST00000553950 ARID4BQ4LE39 1312 aaPredicted RBP21.31■■□□□ 1
SHMT2-210ENST00000553950 SPHKAPQ2M3C7 1700 aa21.31■■□□□ 1
SHMT2-210ENST00000553950 GGT6Q6P531 493 aa21.3■■□□□ 1
SHMT2-210ENST00000553950 CCER1Q8TC90 406 aaPredicted RBP21.3■■□□□ 1
SHMT2-210ENST00000553950 MPHOSPH9Q99550 1183 aa21.3■■□□□ 1
SHMT2-210ENST00000553950 ARHGAP31Q2M1Z3 1444 aa21.28■■□□□ 1
SHMT2-210ENST00000553950 WASHC2CQ9Y4E1 1318 aa21.27■□□□□ 0.99
SHMT2-210ENST00000553950 ESF1Q9H501 851 aaKnown RBP21.25■□□□□ 0.99
SHMT2-210ENST00000553950 ADAMTSL3P82987 1691 aa21.24■□□□□ 0.99
SHMT2-210ENST00000553950 TRPM2O94759 1503 aa21.24■□□□□ 0.99
SHMT2-210ENST00000553950 PREX1Q8TCU6 1659 aa21.23■□□□□ 0.99
SHMT2-210ENST00000553950 PKD2Q13563 968 aa21.22■□□□□ 0.99
SHMT2-210ENST00000553950 MADDQ8WXG6 1647 aa21.21■□□□□ 0.99
SHMT2-210ENST00000553950 NPATQ14207 1427 aa21.21■□□□□ 0.99
SHMT2-210ENST00000553950 RIMS1Q86UR5 1692 aaKnown RBP21.2■□□□□ 0.98
SHMT2-210ENST00000553950 MLECQ14165 292 aa21.18■□□□□ 0.98
SHMT2-210ENST00000553950 C3P01024 1663 aa21.18■□□□□ 0.98
SHMT2-210ENST00000553950 SPATA31D1Q6ZQQ2 1576 aa21.16■□□□□ 0.98
SHMT2-210ENST00000553950 PTPRTO14522 1441 aa21.16■□□□□ 0.98
SHMT2-210ENST00000553950 ANKRD30BQ9BXX2 1392 aa21.16■□□□□ 0.98
SHMT2-210ENST00000553950 CFAP65Q6ZU64 1925 aaKnown RBP21.16■□□□□ 0.98
SHMT2-210ENST00000553950 CCDC144AA2RUR9 1427 aa21.15■□□□□ 0.98
SHMT2-210ENST00000553950 KIF1BO60333 1816 aa21.15■□□□□ 0.98
SHMT2-210ENST00000553950 ERVK-7P63135 1459 aa21.13■□□□□ 0.97
SHMT2-210ENST00000553950 PIK3C2BO00750 1634 aa21.13■□□□□ 0.97
SHMT2-210ENST00000553950 NOS1P29475 1434 aa21.12■□□□□ 0.97
SHMT2-210ENST00000553950 NEURL4Q96JN8 1562 aa21.12■□□□□ 0.97
SHMT2-210ENST00000553950 CLTCL1P53675 1640 aa21.11■□□□□ 0.97
SHMT2-210ENST00000553950 SYNMO15061 1565 aa21.1■□□□□ 0.97
SHMT2-210ENST00000553950 ZMYM3Q14202 1370 aa21.1■□□□□ 0.97
SHMT2-210ENST00000553950 ZEB1P37275 1124 aaPredicted RBP21.08■□□□□ 0.97
SHMT2-210ENST00000553950 KDM5AP29375 1690 aaKnown RBP21.08■□□□□ 0.96
SHMT2-210ENST00000553950 PLA2R1Q13018 1463 aa21.07■□□□□ 0.96
SHMT2-210ENST00000553950 FOXD1Q16676 465 aa21.07■□□□□ 0.96
SHMT2-210ENST00000553950 TIMELESSQ9UNS1 1208 aa21.03■□□□□ 0.96
SHMT2-210ENST00000553950 ADGRB3O60242 1522 aa21.03■□□□□ 0.96
SHMT2-210ENST00000553950 NLRP1Q9C000 1473 aa21.02■□□□□ 0.96
SHMT2-210ENST00000553950 TONSLQ96HA7 1378 aa21.02■□□□□ 0.96
SHMT2-210ENST00000553950 MYO3AQ8NEV4 1616 aa21.02■□□□□ 0.96
SHMT2-210ENST00000553950 SETD1BQ9UPS6 1966 aaKnown RBP21.01■□□□□ 0.95
SHMT2-210ENST00000553950 TNRQ92752 1358 aa21■□□□□ 0.95
SHMT2-210ENST00000553950 ZNF142P52746 1687 aaPredicted RBP21■□□□□ 0.95
SHMT2-210ENST00000553950 SLC52A1Q9NWF4 448 aa21■□□□□ 0.95
SHMT2-210ENST00000553950 UGGT1Q9NYU2 1555 aa21■□□□□ 0.95
SHMT2-210ENST00000553950 PTPRMP28827 1452 aa20.99■□□□□ 0.95
SHMT2-210ENST00000553950 IFT172Q9UG01 1749 aa20.97■□□□□ 0.95
SHMT2-210ENST00000553950 TMEM131LA2VDJ0 1609 aa20.96■□□□□ 0.95
SHMT2-210ENST00000553950 MYO5BQ9ULV0 1848 aa20.96■□□□□ 0.95
SHMT2-210ENST00000553950 NEUROD1Q13562 356 aa20.95■□□□□ 0.94
SHMT2-210ENST00000553950 SPATA31E1Q6ZUB1 1445 aa20.95■□□□□ 0.94
SHMT2-210ENST00000553950 SIN3AQ96ST3 1273 aa20.94■□□□□ 0.94
SHMT2-210ENST00000553950 UBR1Q8IWV7 1749 aa20.94■□□□□ 0.94
SHMT2-210ENST00000553950 PPLO60437 1756 aa20.93■□□□□ 0.94
SHMT2-210ENST00000553950 CEP170BQ9Y4F5 1589 aaPredicted RBP20.92■□□□□ 0.94
SHMT2-210ENST00000553950 FBXO31Q5XUX0 539 aaPredicted RBP20.91■□□□□ 0.94
SHMT2-210ENST00000553950 A2ML1A8K2U0 1454 aa20.89■□□□□ 0.94
SHMT2-210ENST00000553950 STAC3Q96MF2 364 aa20.89■□□□□ 0.93
SHMT2-210ENST00000553950 MYOM2P54296 1465 aa20.88■□□□□ 0.93
SHMT2-210ENST00000553950 NEXMIFQ5QGS0 1516 aa20.86■□□□□ 0.93
SHMT2-210ENST00000553950 UHRF1BP1Q6BDS2 1440 aa20.86■□□□□ 0.93
SHMT2-210ENST00000553950 RPGRIP1LQ68CZ1 1315 aa20.85■□□□□ 0.93
SHMT2-210ENST00000553950 CEBPAP49715 358 aaPredicted RBP20.85■□□□□ 0.93
SHMT2-210ENST00000553950 IDI1Q13907 227 aa20.85■□□□□ 0.93
SHMT2-210ENST00000553950 STAG3Q9UJ98 1225 aa20.85■□□□□ 0.93
SHMT2-210ENST00000553950 LAMC1P11047 1609 aa20.83■□□□□ 0.93
SHMT2-210ENST00000553950 KIAA1210Q9ULL0 1709 aa20.82■□□□□ 0.92
SHMT2-210ENST00000553950 CHGAP10645 457 aaKnown RBP20.82■□□□□ 0.92
SHMT2-210ENST00000553950 SLIT1O75093 1534 aa20.8■□□□□ 0.92
SHMT2-210ENST00000553950 ZNF326Q5BKZ1 582 aaKnown RBP20.8■□□□□ 0.92
SHMT2-210ENST00000553950 L3MBTL2Q969R5 705 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms