RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 NCOA1Q15788 1441 aa34.87■■■■□ 3.17
TDP1-206ENST00000553569 C3P01024 1663 aa34.86■■■■□ 3.17
TDP1-206ENST00000553569 RNF17Q9BXT8 1623 aaKnown RBP34.84■■■■□ 3.17
TDP1-206ENST00000553569 MROH2AA6NES4 1674 aa34.83■■■■□ 3.17
TDP1-206ENST00000553569 ERBINQ96RT1 1412 aa34.83■■■■□ 3.17
TDP1-206ENST00000553569 CEBPAP49715 358 aaPredicted RBP34.83■■■■□ 3.17
TDP1-206ENST00000553569 KDM5DQ9BY66 1539 aa34.77■■■■□ 3.16
TDP1-206ENST00000553569 PPP6R1Q9UPN7 881 aa34.77■■■■□ 3.16
TDP1-206ENST00000553569 MROH1Q8NDA8 1641 aa34.76■■■■□ 3.15
TDP1-206ENST00000553569 FAM135AQ9P2D6 1515 aa34.74■■■■□ 3.15
TDP1-206ENST00000553569 ROCK1Q13464 1354 aa34.73■■■■□ 3.15
TDP1-206ENST00000553569 ZMYM3Q14202 1370 aa34.73■■■■□ 3.15
TDP1-206ENST00000553569 WASHC2CQ9Y4E1 1318 aa34.7■■■■□ 3.15
TDP1-206ENST00000553569 ANKRD50Q9ULJ7 1429 aa34.69■■■■□ 3.14
TDP1-206ENST00000553569 PRDM15P57071 1507 aaPredicted RBP34.69■■■■□ 3.14
TDP1-206ENST00000553569 DEPDC5O75140 1603 aa34.69■■■■□ 3.14
TDP1-206ENST00000553569 CEP152O94986 1710 aa34.68■■■■□ 3.14
TDP1-206ENST00000553569 ZC3H13Q5T200 1668 aaKnown RBP34.68■■■■□ 3.14
TDP1-206ENST00000553569 ABCC3O15438 1527 aa34.67■■■■□ 3.14
TDP1-206ENST00000553569 PREX1Q8TCU6 1659 aa34.65■■■■□ 3.14
TDP1-206ENST00000553569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.64■■■■□ 3.14
TDP1-206ENST00000553569 LMTK3Q96Q04 1460 aa34.63■■■■□ 3.13
TDP1-206ENST00000553569 NPATQ14207 1427 aa34.59■■■■□ 3.13
TDP1-206ENST00000553569 SETD1BQ9UPS6 1966 aaKnown RBP34.59■■■■□ 3.13
TDP1-206ENST00000553569 CAMSAP1Q5T5Y3 1602 aa34.59■■■■□ 3.13
TDP1-206ENST00000553569 KANK1Q14678 1352 aa34.57■■■■□ 3.12
TDP1-206ENST00000553569 PZPP20742 1482 aa34.57■■■■□ 3.12
TDP1-206ENST00000553569 UHRF1BP1Q6BDS2 1440 aa34.55■■■■□ 3.12
TDP1-206ENST00000553569 VWDEQ8N2E2 1590 aa34.53■■■■□ 3.12
TDP1-206ENST00000553569 GCC2Q8IWJ2 1684 aa34.52■■■■□ 3.12
TDP1-206ENST00000553569 UNC13BO14795 1591 aa34.52■■■■□ 3.12
TDP1-206ENST00000553569 MYO3AQ8NEV4 1616 aa34.5■■■■□ 3.11
TDP1-206ENST00000553569 FBXO31Q5XUX0 539 aaPredicted RBP34.49■■■■□ 3.11
TDP1-206ENST00000553569 HSPA2P54652 639 aa34.47■■■■□ 3.11
TDP1-206ENST00000553569 NAIPQ13075 1403 aa34.47■■■■□ 3.11
TDP1-206ENST00000553569 LMTK2Q8IWU2 1503 aa34.45■■■■□ 3.11
TDP1-206ENST00000553569 CFAP65Q6ZU64 1925 aaKnown RBP34.45■■■■□ 3.11
TDP1-206ENST00000553569 TNRQ92752 1358 aa34.44■■■■□ 3.1
TDP1-206ENST00000553569 HFM1A2PYH4 1435 aa34.42■■■■□ 3.1
TDP1-206ENST00000553569 ERVK-7P63135 1459 aa34.41■■■■□ 3.1
TDP1-206ENST00000553569 ZNF142P52746 1687 aaPredicted RBP34.41■■■■□ 3.1
TDP1-206ENST00000553569 EFCAB6Q5THR3 1501 aa34.4■■■■□ 3.1
TDP1-206ENST00000553569 SPATA31D1Q6ZQQ2 1576 aa34.4■■■■□ 3.1
TDP1-206ENST00000553569 ARHGAP31Q2M1Z3 1444 aa34.39■■■■□ 3.1
TDP1-206ENST00000553569 CEP170BQ9Y4F5 1589 aaPredicted RBP34.39■■■■□ 3.1
TDP1-206ENST00000553569 IQGAP3Q86VI3 1631 aa34.37■■■■□ 3.09
TDP1-206ENST00000553569 TET3O43151 1660 aa34.37■■■■□ 3.09
TDP1-206ENST00000553569 NUP155O75694 1391 aa34.35■■■■□ 3.09
TDP1-206ENST00000553569 A2ML1A8K2U0 1454 aa34.32■■■■□ 3.08
TDP1-206ENST00000553569 NLRP1Q9C000 1473 aa34.28■■■■□ 3.08
TDP1-206ENST00000553569 E9PCH4 1651 aa34.25■■■■□ 3.07
TDP1-206ENST00000553569 RPRD2Q5VT52 1461 aaKnown RBP34.24■■■■□ 3.07
TDP1-206ENST00000553569 STRCQ7RTU9 1775 aa34.21■■■■□ 3.07
TDP1-206ENST00000553569 SYNMO15061 1565 aa34.21■■■■□ 3.07
TDP1-206ENST00000553569 TRIM52Q96A61 297 aa34.2■■■■□ 3.07
TDP1-206ENST00000553569 UGGT1Q9NYU2 1555 aa34.19■■■■□ 3.06
TDP1-206ENST00000553569 NOS1P29475 1434 aa34.19■■■■□ 3.06
TDP1-206ENST00000553569 SETD5Q9C0A6 1442 aa34.14■■■■□ 3.06
TDP1-206ENST00000553569 PIK3C2BO00750 1634 aa34.14■■■■□ 3.06
TDP1-206ENST00000553569 PLA2R1Q13018 1463 aa34.14■■■■□ 3.06
TDP1-206ENST00000553569 UBR1Q8IWV7 1749 aa34.13■■■■□ 3.05
TDP1-206ENST00000553569 THEMISQ8N1K5 641 aaPredicted RBP34.08■■■■□ 3.05
TDP1-206ENST00000553569 NCKAP5LQ9HCH0 1330 aa34.07■■■■□ 3.05
TDP1-206ENST00000553569 SPHKAPQ2M3C7 1700 aa34.06■■■■□ 3.04
TDP1-206ENST00000553569 POLR1AO95602 1720 aaPredicted RBP34.05■■■■□ 3.04
TDP1-206ENST00000553569 IDI1Q13907 227 aa34.05■■■■□ 3.04
TDP1-206ENST00000553569 RAB3GAP2Q9H2M9 1393 aa34.04■■■■□ 3.04
TDP1-206ENST00000553569 SLC4A1APQ9BWU0 796 aaKnown RBP34.03■■■■□ 3.04
TDP1-206ENST00000553569 STAG3Q9UJ98 1225 aa34.03■■■■□ 3.04
TDP1-206ENST00000553569 SLC52A1Q9NWF4 448 aa34.02■■■■□ 3.04
TDP1-206ENST00000553569 ADGRB3O60242 1522 aa34.02■■■■□ 3.04
TDP1-206ENST00000553569 PKD2Q13563 968 aa34.01■■■■□ 3.03
TDP1-206ENST00000553569 KDM5AP29375 1690 aaKnown RBP34■■■■□ 3.03
TDP1-206ENST00000553569 DMRT2Q9Y5R5 561 aa34■■■■□ 3.03
TDP1-206ENST00000553569 PTPRTO14522 1441 aa33.97■■■■□ 3.03
TDP1-206ENST00000553569 NEURL4Q96JN8 1562 aa33.97■■■■□ 3.03
TDP1-206ENST00000553569 MYO5BQ9ULV0 1848 aa33.96■■■■□ 3.03
TDP1-206ENST00000553569 ANKLE2Q86XL3 938 aa33.95■■■■□ 3.03
TDP1-206ENST00000553569 SLIT1O75093 1534 aa33.93■■■■□ 3.02
TDP1-206ENST00000553569 ARHGAP23Q9P227 1491 aa33.92■■■■□ 3.02
TDP1-206ENST00000553569 TRPM2O94759 1503 aa33.92■■■■□ 3.02
TDP1-206ENST00000553569 TMEM131LA2VDJ0 1609 aa33.91■■■■□ 3.02
TDP1-206ENST00000553569 ACIN1Q9UKV3 1341 aaKnown RBP33.91■■■■□ 3.02
TDP1-206ENST00000553569 CHGAP10645 457 aaKnown RBP33.91■■■■□ 3.02
TDP1-206ENST00000553569 TMEM2Q9UHN6 1383 aa33.89■■■■□ 3.02
TDP1-206ENST00000553569 MPHOSPH9Q99550 1183 aa33.89■■■■□ 3.02
TDP1-206ENST00000553569 CLTCL1P53675 1640 aa33.89■■■■□ 3.02
TDP1-206ENST00000553569 FOXD1Q16676 465 aa33.88■■■■□ 3.01
TDP1-206ENST00000553569 SCAF11Q99590 1463 aaKnown RBP33.88■■■■□ 3.01
TDP1-206ENST00000553569 IQGAP1P46940 1657 aa33.85■■■■□ 3.01
TDP1-206ENST00000553569 NPHP4O75161 1426 aaPredicted RBP33.85■■■■□ 3.01
TDP1-206ENST00000553569 MED14O60244 1454 aa33.83■■■■□ 3.01
TDP1-206ENST00000553569 TXNDC2Q86VQ3 553 aa33.83■■■■□ 3.01
TDP1-206ENST00000553569 EID1Q9Y6B2 187 aa33.83■■■■□ 3.01
TDP1-206ENST00000553569 LTKP29376 864 aa33.82■■■■□ 3
TDP1-206ENST00000553569 KIF1BO60333 1816 aa33.78■■■■□ 3
TDP1-206ENST00000553569 RIMS2Q9UQ26 1411 aa33.77■■■■□ 3
TDP1-206ENST00000553569 HRCP23327 699 aa33.76■■■□□ 2.99
TDP1-206ENST00000553569 ZFYVE9O95405 1425 aa33.75■■■□□ 2.99
TDP1-206ENST00000553569 TRIM26Q12899 539 aaPredicted RBP33.73■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms