RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 EIF2AK4Q9P2K8 1649 aaKnown RBP29.94■■■□□ 2.38
PTCH1-227ENST00000553256 PTPRKQ15262 1439 aa29.94■■■□□ 2.38
PTCH1-227ENST00000553256 HSPA2P54652 639 aa29.93■■■□□ 2.38
PTCH1-227ENST00000553256 KIF15Q9NS87 1388 aa29.92■■■□□ 2.38
PTCH1-227ENST00000553256 ADGRL2O95490 1459 aa29.91■■■□□ 2.38
PTCH1-227ENST00000553256 NCOA1Q15788 1441 aa29.9■■■□□ 2.38
PTCH1-227ENST00000553256 KDM5DQ9BY66 1539 aa29.9■■■□□ 2.38
PTCH1-227ENST00000553256 UHRF1BP1Q6BDS2 1440 aa29.88■■■□□ 2.37
PTCH1-227ENST00000553256 ERBINQ96RT1 1412 aa29.87■■■□□ 2.37
PTCH1-227ENST00000553256 RRP7BPQ9NSQ0 103 aa29.85■■■□□ 2.37
PTCH1-227ENST00000553256 PPARGC1BQ86YN6 1023 aaKnown RBP29.84■■■□□ 2.37
PTCH1-227ENST00000553256 ABCC3O15438 1527 aa29.83■■■□□ 2.37
PTCH1-227ENST00000553256 PZPP20742 1482 aa29.82■■■□□ 2.36
PTCH1-227ENST00000553256 ANKRD30AQ9BXX3 1397 aa29.82■■■□□ 2.36
PTCH1-227ENST00000553256 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.82■■■□□ 2.36
PTCH1-227ENST00000553256 FAM50AQ14320 339 aaKnown RBP29.82■■■□□ 2.36
PTCH1-227ENST00000553256 CHIC2Q9UKJ5 165 aa29.81■■■□□ 2.36
PTCH1-227ENST00000553256 PRDM15P57071 1507 aaPredicted RBP29.8■■■□□ 2.36
PTCH1-227ENST00000553256 DEPDC5O75140 1603 aa29.79■■■□□ 2.36
PTCH1-227ENST00000553256 WASHC2CQ9Y4E1 1318 aa29.79■■■□□ 2.36
PTCH1-227ENST00000553256 ZC3H13Q5T200 1668 aaKnown RBP29.76■■■□□ 2.36
PTCH1-227ENST00000553256 FBXO31Q5XUX0 539 aaPredicted RBP29.76■■■□□ 2.35
PTCH1-227ENST00000553256 MYO3AQ8NEV4 1616 aa29.75■■■□□ 2.35
PTCH1-227ENST00000553256 STRCQ7RTU9 1775 aa29.75■■■□□ 2.35
PTCH1-227ENST00000553256 RRBP1Q9P2E9 1410 aaKnown RBP29.74■■■□□ 2.35
PTCH1-227ENST00000553256 VWDEQ8N2E2 1590 aa29.73■■■□□ 2.35
PTCH1-227ENST00000553256 ZNF142P52746 1687 aaPredicted RBP29.73■■■□□ 2.35
PTCH1-227ENST00000553256 ROCK1Q13464 1354 aa29.71■■■□□ 2.35
PTCH1-227ENST00000553256 CEP170BQ9Y4F5 1589 aaPredicted RBP29.69■■■□□ 2.34
PTCH1-227ENST00000553256 ARHGAP31Q2M1Z3 1444 aa29.68■■■□□ 2.34
PTCH1-227ENST00000553256 SPATA31D1Q6ZQQ2 1576 aa29.68■■■□□ 2.34
PTCH1-227ENST00000553256 TNRQ92752 1358 aa29.67■■■□□ 2.34
PTCH1-227ENST00000553256 LMTK2Q8IWU2 1503 aa29.67■■■□□ 2.34
PTCH1-227ENST00000553256 CEP152O94986 1710 aa29.67■■■□□ 2.34
PTCH1-227ENST00000553256 ANKRD50Q9ULJ7 1429 aa29.66■■■□□ 2.34
PTCH1-227ENST00000553256 CAMSAP1Q5T5Y3 1602 aa29.66■■■□□ 2.34
PTCH1-227ENST00000553256 A2ML1A8K2U0 1454 aa29.66■■■□□ 2.34
PTCH1-227ENST00000553256 ERVK-7P63135 1459 aa29.63■■■□□ 2.33
PTCH1-227ENST00000553256 PLA2R1Q13018 1463 aa29.61■■■□□ 2.33
PTCH1-227ENST00000553256 PTPRTO14522 1441 aa29.59■■■□□ 2.33
PTCH1-227ENST00000553256 NLRP1Q9C000 1473 aa29.58■■■□□ 2.33
PTCH1-227ENST00000553256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.55■■■□□ 2.32
PTCH1-227ENST00000553256 UNC13BO14795 1591 aa29.53■■■□□ 2.32
PTCH1-227ENST00000553256 KANK1Q14678 1352 aa29.52■■■□□ 2.32
PTCH1-227ENST00000553256 EFCAB6Q5THR3 1501 aa29.51■■■□□ 2.32
PTCH1-227ENST00000553256 DMRT2Q9Y5R5 561 aa29.51■■■□□ 2.31
PTCH1-227ENST00000553256 NCKAP5LQ9HCH0 1330 aa29.48■■■□□ 2.31
PTCH1-227ENST00000553256 ITGAEP38570 1179 aa29.48■■■□□ 2.31
PTCH1-227ENST00000553256 NOS1P29475 1434 aa29.47■■■□□ 2.31
PTCH1-227ENST00000553256 PKD2Q13563 968 aa29.47■■■□□ 2.31
PTCH1-227ENST00000553256 UGGT1Q9NYU2 1555 aa29.46■■■□□ 2.31
PTCH1-227ENST00000553256 NEURL4Q96JN8 1562 aa29.43■■■□□ 2.3
PTCH1-227ENST00000553256 NAIPQ13075 1403 aa29.42■■■□□ 2.3
PTCH1-227ENST00000553256 SYNMO15061 1565 aa29.42■■■□□ 2.3
PTCH1-227ENST00000553256 RPRD2Q5VT52 1461 aaKnown RBP29.42■■■□□ 2.3
PTCH1-227ENST00000553256 CFAP65Q6ZU64 1925 aaKnown RBP29.41■■■□□ 2.3
PTCH1-227ENST00000553256 TET3O43151 1660 aa29.41■■■□□ 2.3
PTCH1-227ENST00000553256 THEMISQ8N1K5 641 aaPredicted RBP29.4■■■□□ 2.3
PTCH1-227ENST00000553256 IQGAP3Q86VI3 1631 aa29.4■■■□□ 2.3
PTCH1-227ENST00000553256 UBR1Q8IWV7 1749 aa29.39■■■□□ 2.3
PTCH1-227ENST00000553256 LTBP4Q8N2S1 1624 aa29.38■■■□□ 2.29
PTCH1-227ENST00000553256 ILDR1Q86SU0 546 aaPredicted RBP29.37■■■□□ 2.29
PTCH1-227ENST00000553256 MED14O60244 1454 aa29.36■■■□□ 2.29
PTCH1-227ENST00000553256 ARHGAP23Q9P227 1491 aa29.36■■■□□ 2.29
PTCH1-227ENST00000553256 HFM1A2PYH4 1435 aa29.35■■■□□ 2.29
PTCH1-227ENST00000553256 IDI1Q13907 227 aa29.34■■■□□ 2.29
PTCH1-227ENST00000553256 GCC2Q8IWJ2 1684 aa29.34■■■□□ 2.29
PTCH1-227ENST00000553256 SLIT1O75093 1534 aa29.33■■■□□ 2.29
PTCH1-227ENST00000553256 PIK3C2BO00750 1634 aa29.33■■■□□ 2.29
PTCH1-227ENST00000553256 POLR1AO95602 1720 aaPredicted RBP29.33■■■□□ 2.29
PTCH1-227ENST00000553256 NUP155O75694 1391 aa29.32■■■□□ 2.28
PTCH1-227ENST00000553256 CERKQ8TCT0 537 aa29.31■■■□□ 2.28
PTCH1-227ENST00000553256 E9PCH4 1651 aa29.31■■■□□ 2.28
PTCH1-227ENST00000553256 KDM5AP29375 1690 aaKnown RBP29.31■■■□□ 2.28
PTCH1-227ENST00000553256 ANKLE2Q86XL3 938 aa29.29■■■□□ 2.28
PTCH1-227ENST00000553256 FBXO41Q8TF61 875 aa29.26■■■□□ 2.27
PTCH1-227ENST00000553256 SLC52A1Q9NWF4 448 aa29.26■■■□□ 2.27
PTCH1-227ENST00000553256 ZNF335Q9H4Z2 1342 aaPredicted RBP29.24■■■□□ 2.27
PTCH1-227ENST00000553256 NPHP4O75161 1426 aaPredicted RBP29.24■■■□□ 2.27
PTCH1-227ENST00000553256 LTKP29376 864 aa29.24■■■□□ 2.27
PTCH1-227ENST00000553256 TMEM2Q9UHN6 1383 aa29.24■■■□□ 2.27
PTCH1-227ENST00000553256 ADGRB3O60242 1522 aa29.22■■■□□ 2.27
PTCH1-227ENST00000553256 SCAF11Q99590 1463 aaKnown RBP29.21■■■□□ 2.27
PTCH1-227ENST00000553256 IQGAP1P46940 1657 aa29.17■■■□□ 2.26
PTCH1-227ENST00000553256 IQSEC2Q5JU85 1478 aa29.16■■■□□ 2.26
PTCH1-227ENST00000553256 TMEM131LA2VDJ0 1609 aa29.16■■■□□ 2.26
PTCH1-227ENST00000553256 ZFYVE9O95405 1425 aa29.13■■■□□ 2.25
PTCH1-227ENST00000553256 TXNDC2Q86VQ3 553 aa29.13■■■□□ 2.25
PTCH1-227ENST00000553256 MYO5BQ9ULV0 1848 aa29.06■■■□□ 2.24
PTCH1-227ENST00000553256 STAG3Q9UJ98 1225 aa29.06■■■□□ 2.24
PTCH1-227ENST00000553256 SPHKAPQ2M3C7 1700 aa29.06■■■□□ 2.24
PTCH1-227ENST00000553256 STRCP1A6NGW2 1772 aa29.05■■■□□ 2.24
PTCH1-227ENST00000553256 CPS1P31327 1500 aa29.04■■■□□ 2.24
PTCH1-227ENST00000553256 EID1Q9Y6B2 187 aa29.04■■■□□ 2.24
PTCH1-227ENST00000553256 TRPM2O94759 1503 aa29.03■■■□□ 2.24
PTCH1-227ENST00000553256 RIMS2Q9UQ26 1411 aa29.01■■■□□ 2.23
PTCH1-227ENST00000553256 CLTCL1P53675 1640 aa28.98■■■□□ 2.23
PTCH1-227ENST00000553256 TRIM52Q96A61 297 aa28.97■■■□□ 2.23
PTCH1-227ENST00000553256 PLEKHG1Q9ULL1 1385 aa28.97■■■□□ 2.23
PTCH1-227ENST00000553256 SETD5Q9C0A6 1442 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms