RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 KIF15Q9NS87 1388 aa29.05■■■□□ 2.24
HDAC4-217ENST00000553145 KDM5DQ9BY66 1539 aa29.04■■■□□ 2.24
HDAC4-217ENST00000553145 UHRF1BP1Q6BDS2 1440 aa29.03■■■□□ 2.24
HDAC4-217ENST00000553145 CHIC2Q9UKJ5 165 aa29.02■■■□□ 2.24
HDAC4-217ENST00000553145 SETD1BQ9UPS6 1966 aaKnown RBP29.01■■■□□ 2.23
HDAC4-217ENST00000553145 FAM135AQ9P2D6 1515 aa29.01■■■□□ 2.23
HDAC4-217ENST00000553145 RRP7BPQ9NSQ0 103 aa29.01■■■□□ 2.23
HDAC4-217ENST00000553145 NPATQ14207 1427 aa29.01■■■□□ 2.23
HDAC4-217ENST00000553145 MROH1Q8NDA8 1641 aa29.01■■■□□ 2.23
HDAC4-217ENST00000553145 PTPRKQ15262 1439 aa29■■■□□ 2.23
HDAC4-217ENST00000553145 ERBINQ96RT1 1412 aa28.97■■■□□ 2.23
HDAC4-217ENST00000553145 ANKRD30AQ9BXX3 1397 aa28.97■■■□□ 2.23
HDAC4-217ENST00000553145 ADGRL2O95490 1459 aa28.97■■■□□ 2.23
HDAC4-217ENST00000553145 NCOA1Q15788 1441 aa28.95■■■□□ 2.23
HDAC4-217ENST00000553145 WASHC2CQ9Y4E1 1318 aa28.94■■■□□ 2.22
HDAC4-217ENST00000553145 ABCC3O15438 1527 aa28.93■■■□□ 2.22
HDAC4-217ENST00000553145 MYO3AQ8NEV4 1616 aa28.91■■■□□ 2.22
HDAC4-217ENST00000553145 ZC3H13Q5T200 1668 aaKnown RBP28.91■■■□□ 2.22
HDAC4-217ENST00000553145 PZPP20742 1482 aa28.91■■■□□ 2.22
HDAC4-217ENST00000553145 PRDM15P57071 1507 aaPredicted RBP28.89■■■□□ 2.22
HDAC4-217ENST00000553145 DEPDC5O75140 1603 aa28.88■■■□□ 2.21
HDAC4-217ENST00000553145 CEP152O94986 1710 aa28.88■■■□□ 2.21
HDAC4-217ENST00000553145 FBXO31Q5XUX0 539 aaPredicted RBP28.87■■■□□ 2.21
HDAC4-217ENST00000553145 ZNF142P52746 1687 aaPredicted RBP28.86■■■□□ 2.21
HDAC4-217ENST00000553145 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.85■■■□□ 2.21
HDAC4-217ENST00000553145 STRCQ7RTU9 1775 aa28.84■■■□□ 2.21
HDAC4-217ENST00000553145 CEP170BQ9Y4F5 1589 aaPredicted RBP28.83■■■□□ 2.21
HDAC4-217ENST00000553145 CAMSAP1Q5T5Y3 1602 aa28.83■■■□□ 2.21
HDAC4-217ENST00000553145 RRBP1Q9P2E9 1410 aaKnown RBP28.81■■■□□ 2.2
HDAC4-217ENST00000553145 TNRQ92752 1358 aa28.81■■■□□ 2.2
HDAC4-217ENST00000553145 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.79■■■□□ 2.2
HDAC4-217ENST00000553145 ANKRD50Q9ULJ7 1429 aa28.78■■■□□ 2.2
HDAC4-217ENST00000553145 ROCK1Q13464 1354 aa28.77■■■□□ 2.2
HDAC4-217ENST00000553145 VWDEQ8N2E2 1590 aa28.77■■■□□ 2.2
HDAC4-217ENST00000553145 ITGAEP38570 1179 aa28.77■■■□□ 2.2
HDAC4-217ENST00000553145 A2ML1A8K2U0 1454 aa28.76■■■□□ 2.19
HDAC4-217ENST00000553145 SPATA31D1Q6ZQQ2 1576 aa28.75■■■□□ 2.19
HDAC4-217ENST00000553145 ERVK-7P63135 1459 aa28.74■■■□□ 2.19
HDAC4-217ENST00000553145 KANK1Q14678 1352 aa28.73■■■□□ 2.19
HDAC4-217ENST00000553145 LMTK2Q8IWU2 1503 aa28.72■■■□□ 2.19
HDAC4-217ENST00000553145 ARHGAP31Q2M1Z3 1444 aa28.71■■■□□ 2.19
HDAC4-217ENST00000553145 NLRP1Q9C000 1473 aa28.69■■■□□ 2.18
HDAC4-217ENST00000553145 PLA2R1Q13018 1463 aa28.68■■■□□ 2.18
HDAC4-217ENST00000553145 CFAP65Q6ZU64 1925 aaKnown RBP28.66■■■□□ 2.18
HDAC4-217ENST00000553145 UNC13BO14795 1591 aa28.66■■■□□ 2.18
HDAC4-217ENST00000553145 PTPRTO14522 1441 aa28.64■■■□□ 2.18
HDAC4-217ENST00000553145 EFCAB6Q5THR3 1501 aa28.64■■■□□ 2.17
HDAC4-217ENST00000553145 DMRT2Q9Y5R5 561 aa28.63■■■□□ 2.17
HDAC4-217ENST00000553145 NCKAP5LQ9HCH0 1330 aa28.63■■■□□ 2.17
HDAC4-217ENST00000553145 UGGT1Q9NYU2 1555 aa28.62■■■□□ 2.17
HDAC4-217ENST00000553145 TET3O43151 1660 aa28.56■■■□□ 2.16
HDAC4-217ENST00000553145 PKD2Q13563 968 aa28.55■■■□□ 2.16
HDAC4-217ENST00000553145 SYNMO15061 1565 aa28.54■■■□□ 2.16
HDAC4-217ENST00000553145 IQGAP3Q86VI3 1631 aa28.54■■■□□ 2.16
HDAC4-217ENST00000553145 POLR1AO95602 1720 aaPredicted RBP28.53■■■□□ 2.16
HDAC4-217ENST00000553145 UBR1Q8IWV7 1749 aa28.53■■■□□ 2.16
HDAC4-217ENST00000553145 NEURL4Q96JN8 1562 aa28.53■■■□□ 2.16
HDAC4-217ENST00000553145 NOS1P29475 1434 aa28.52■■■□□ 2.16
HDAC4-217ENST00000553145 GCC2Q8IWJ2 1684 aa28.52■■■□□ 2.16
HDAC4-217ENST00000553145 THEMISQ8N1K5 641 aaPredicted RBP28.52■■■□□ 2.16
HDAC4-217ENST00000553145 NAIPQ13075 1403 aa28.52■■■□□ 2.16
HDAC4-217ENST00000553145 PIK3C2BO00750 1634 aa28.51■■■□□ 2.15
HDAC4-217ENST00000553145 RPRD2Q5VT52 1461 aaKnown RBP28.5■■■□□ 2.15
HDAC4-217ENST00000553145 ILDR1Q86SU0 546 aaPredicted RBP28.48■■■□□ 2.15
HDAC4-217ENST00000553145 NUP155O75694 1391 aa28.48■■■□□ 2.15
HDAC4-217ENST00000553145 E9PCH4 1651 aa28.47■■■□□ 2.15
HDAC4-217ENST00000553145 HFM1A2PYH4 1435 aa28.44■■■□□ 2.14
HDAC4-217ENST00000553145 LTBP4Q8N2S1 1624 aa28.44■■■□□ 2.14
HDAC4-217ENST00000553145 ANKLE2Q86XL3 938 aa28.44■■■□□ 2.14
HDAC4-217ENST00000553145 CERKQ8TCT0 537 aa28.44■■■□□ 2.14
HDAC4-217ENST00000553145 IDI1Q13907 227 aa28.43■■■□□ 2.14
HDAC4-217ENST00000553145 ARHGAP23Q9P227 1491 aa28.41■■■□□ 2.14
HDAC4-217ENST00000553145 MED14O60244 1454 aa28.4■■■□□ 2.14
HDAC4-217ENST00000553145 SLIT1O75093 1534 aa28.4■■■□□ 2.14
HDAC4-217ENST00000553145 KDM5AP29375 1690 aaKnown RBP28.39■■■□□ 2.14
HDAC4-217ENST00000553145 ZNF335Q9H4Z2 1342 aaPredicted RBP28.39■■■□□ 2.13
HDAC4-217ENST00000553145 NPHP4O75161 1426 aaPredicted RBP28.38■■■□□ 2.13
HDAC4-217ENST00000553145 ADGRB3O60242 1522 aa28.38■■■□□ 2.13
HDAC4-217ENST00000553145 FBXO41Q8TF61 875 aa28.36■■■□□ 2.13
HDAC4-217ENST00000553145 IQGAP1P46940 1657 aa28.35■■■□□ 2.13
HDAC4-217ENST00000553145 SLC52A1Q9NWF4 448 aa28.35■■■□□ 2.13
HDAC4-217ENST00000553145 SCAF11Q99590 1463 aaKnown RBP28.34■■■□□ 2.13
HDAC4-217ENST00000553145 STAG3Q9UJ98 1225 aa28.34■■■□□ 2.13
HDAC4-217ENST00000553145 TMEM2Q9UHN6 1383 aa28.34■■■□□ 2.13
HDAC4-217ENST00000553145 LTKP29376 864 aa28.33■■■□□ 2.13
HDAC4-217ENST00000553145 TXNDC2Q86VQ3 553 aa28.29■■■□□ 2.12
HDAC4-217ENST00000553145 TMEM131LA2VDJ0 1609 aa28.28■■■□□ 2.12
HDAC4-217ENST00000553145 MYO5BQ9ULV0 1848 aa28.27■■■□□ 2.12
HDAC4-217ENST00000553145 SPHKAPQ2M3C7 1700 aa28.26■■■□□ 2.12
HDAC4-217ENST00000553145 TRIM52Q96A61 297 aa28.24■■■□□ 2.11
HDAC4-217ENST00000553145 EID1Q9Y6B2 187 aa28.24■■■□□ 2.11
HDAC4-217ENST00000553145 IQSEC2Q5JU85 1478 aa28.21■■■□□ 2.11
HDAC4-217ENST00000553145 ZFYVE9O95405 1425 aa28.2■■■□□ 2.11
HDAC4-217ENST00000553145 CHGAP10645 457 aaKnown RBP28.18■■■□□ 2.1
HDAC4-217ENST00000553145 CPS1P31327 1500 aa28.18■■■□□ 2.1
HDAC4-217ENST00000553145 STRCP1A6NGW2 1772 aa28.17■■■□□ 2.1
HDAC4-217ENST00000553145 RIMS2Q9UQ26 1411 aa28.17■■■□□ 2.1
HDAC4-217ENST00000553145 TRPM2O94759 1503 aa28.16■■■□□ 2.1
HDAC4-217ENST00000553145 CLTCL1P53675 1640 aa28.15■■■□□ 2.1
HDAC4-217ENST00000553145 SLC4A1APQ9BWU0 796 aaKnown RBP28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms