RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PBRM1Q86U86 1689 aa7.41□□□□□ -1.22
LIMA1-212ENST00000552491 DHX29Q7Z478 1369 aaKnown RBP7.41□□□□□ -1.22
LIMA1-212ENST00000552491 DNMT1P26358 1616 aaKnown RBP7.41□□□□□ -1.22
LIMA1-212ENST00000552491 ROCK1Q13464 1354 aa7.41□□□□□ -1.22
LIMA1-212ENST00000552491 POTEMA6NI47 508 aa7.4□□□□□ -1.22
LIMA1-212ENST00000552491 PZPP20742 1482 aa7.4□□□□□ -1.22
LIMA1-212ENST00000552491 PDS5BQ9NTI5 1447 aa7.4□□□□□ -1.22
LIMA1-212ENST00000552491 ERICH6Q7L0X2 663 aa7.4□□□□□ -1.23
LIMA1-212ENST00000552491 ADAMTS12P58397 1594 aa7.39□□□□□ -1.23
LIMA1-212ENST00000552491 SMG6Q86US8 1419 aaKnown RBP7.39□□□□□ -1.23
LIMA1-212ENST00000552491 MBD5Q9P267 1494 aa7.38□□□□□ -1.23
LIMA1-212ENST00000552491 NUP153P49790 1475 aaKnown RBP7.38□□□□□ -1.23
LIMA1-212ENST00000552491 PAK3O75914 559 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-212ENST00000552491 RNF123Q5XPI4 1314 aa7.38□□□□□ -1.23
LIMA1-212ENST00000552491 POLR3GLQ9BT43 218 aa7.37□□□□□ -1.23
LIMA1-212ENST00000552491 ZNF326Q5BKZ1 582 aaKnown RBP7.37□□□□□ -1.23
LIMA1-212ENST00000552491 POTEGQ6S5H5 508 aa7.37□□□□□ -1.23
LIMA1-212ENST00000552491 DISP1Q96F81 1524 aa7.37□□□□□ -1.23
LIMA1-212ENST00000552491 USP47Q96K76 1375 aa7.37□□□□□ -1.23
LIMA1-212ENST00000552491 NUDCQ9Y266 331 aa7.36□□□□□ -1.23
LIMA1-212ENST00000552491 KDM5CP41229 1560 aa7.35□□□□□ -1.23
LIMA1-212ENST00000552491 KIAA0556O60303 1618 aa7.35□□□□□ -1.23
LIMA1-212ENST00000552491 PRG4Q92954 1404 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-212ENST00000552491 PNISRQ8TF01 805 aaKnown RBP7.35□□□□□ -1.23
LIMA1-212ENST00000552491 CAMSAP2Q08AD1 1489 aa7.35□□□□□ -1.23
LIMA1-212ENST00000552491 CREBZFQ9NS37 354 aa7.34□□□□□ -1.23
LIMA1-212ENST00000552491 NOP58Q9Y2X3 529 aaKnown RBP7.34□□□□□ -1.23
LIMA1-212ENST00000552491 ZNF608Q9ULD9 1512 aaPredicted RBP7.34□□□□□ -1.23
LIMA1-212ENST00000552491 KIAA1107Q9UPP5 1409 aa7.34□□□□□ -1.23
LIMA1-212ENST00000552491 DEKP35659 375 aaKnown RBP7.34□□□□□ -1.23
LIMA1-212ENST00000552491 PKD2Q13563 968 aa7.34□□□□□ -1.23
LIMA1-212ENST00000552491 MYT1LQ9UL68 1186 aa7.34□□□□□ -1.23
LIMA1-212ENST00000552491 RAPGEF6Q8TEU7 1601 aa7.34□□□□□ -1.23
LIMA1-212ENST00000552491 KIF14Q15058 1648 aa7.33□□□□□ -1.24
LIMA1-212ENST00000552491 CCDC136Q96JN2 1154 aa7.33□□□□□ -1.24
LIMA1-212ENST00000552491 GPATCH8Q9UKJ3 1502 aaKnown RBP7.33□□□□□ -1.24
LIMA1-212ENST00000552491 NBR1Q14596 966 aa7.33□□□□□ -1.24
LIMA1-212ENST00000552491 PHF12Q96QT6 1004 aa7.33□□□□□ -1.24
LIMA1-212ENST00000552491 CFDP1Q9UEE9 299 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-212ENST00000552491 ZNF777Q9ULD5 760 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-212ENST00000552491 ADGBQ8N7X0 1667 aa7.32□□□□□ -1.24
LIMA1-212ENST00000552491 KIAA0586Q9BVV6 1533 aa7.32□□□□□ -1.24
LIMA1-212ENST00000552491 TROQ12816 1431 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-212ENST00000552491 ADGRL2O95490 1459 aa7.31□□□□□ -1.24
LIMA1-212ENST00000552491 CROCC2H7BZ55 1655 aa7.31□□□□□ -1.24
LIMA1-212ENST00000552491 PLB1Q6P1J6 1458 aa7.31□□□□□ -1.24
LIMA1-212ENST00000552491 TMC1Q8TDI8 760 aa7.31□□□□□ -1.24
LIMA1-212ENST00000552491 LRPPRCP42704 1394 aaKnown RBP7.31□□□□□ -1.24
LIMA1-212ENST00000552491 UHRF1BP1Q6BDS2 1440 aa7.31□□□□□ -1.24
LIMA1-212ENST00000552491 RALGAPBQ86X10 1494 aa7.3□□□□□ -1.24
LIMA1-212ENST00000552491 ST20-MTHFSA0A0A6YYL1 179 aa7.3□□□□□ -1.24
LIMA1-212ENST00000552491 CARD11Q9BXL7 1154 aa7.3□□□□□ -1.24
LIMA1-212ENST00000552491 ARID4BQ4LE39 1312 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-212ENST00000552491 ANKRD50Q9ULJ7 1429 aa7.3□□□□□ -1.24
LIMA1-212ENST00000552491 IPO9Q96P70 1041 aaKnown RBP7.29□□□□□ -1.24
LIMA1-212ENST00000552491 ITSN2Q9NZM3 1697 aa7.29□□□□□ -1.24
LIMA1-212ENST00000552491 MRC2Q9UBG0 1479 aa7.29□□□□□ -1.24
LIMA1-212ENST00000552491 KDM2AQ9Y2K7 1162 aa7.29□□□□□ -1.24
LIMA1-212ENST00000552491 GRIN2AQ12879 1464 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 NUP155O75694 1391 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 KIF15Q9NS87 1388 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 EXOC6Q8TAG9 804 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 SALL2Q9Y467 1007 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-212ENST00000552491 ANKRD30AQ9BXX3 1397 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 E9PCH4 1651 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 ADCY10Q96PN6 1610 aa7.28□□□□□ -1.24
LIMA1-212ENST00000552491 CDC42BPAQ5VT25 1732 aa7.27□□□□□ -1.24
LIMA1-212ENST00000552491 ROCK2O75116 1388 aaKnown RBP7.27□□□□□ -1.24
LIMA1-212ENST00000552491 RRP1P56182 461 aaKnown RBP7.27□□□□□ -1.25
LIMA1-212ENST00000552491 BRD4O60885 1362 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-212ENST00000552491 MYBBP1AQ9BQG0 1328 aaKnown RBP7.27□□□□□ -1.25
LIMA1-212ENST00000552491 POTEJP0CG39 1038 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 ANP32AP39687 249 aaKnown RBP7.26□□□□□ -1.25
LIMA1-212ENST00000552491 DCAF11Q8TEB1 546 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 ARHGEF12Q9NZN5 1544 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 IFT140Q96RY7 1462 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 C9orf84Q5VXU9 1444 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 CEP170Q5SW79 1584 aa7.26□□□□□ -1.25
LIMA1-212ENST00000552491 CDCA7LQ96GN5 454 aa7.25□□□□□ -1.25
LIMA1-212ENST00000552491 EIF4G3O43432 1585 aaKnown RBP7.25□□□□□ -1.25
LIMA1-212ENST00000552491 RALBP1Q15311 655 aa7.25□□□□□ -1.25
LIMA1-212ENST00000552491 ZBTB47Q9UFB7 747 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-212ENST00000552491 RCAN3Q9UKA8 241 aa7.25□□□□□ -1.25
LIMA1-212ENST00000552491 ABCC10Q5T3U5 1492 aa7.25□□□□□ -1.25
LIMA1-212ENST00000552491 SKAP1Q86WV1 359 aa7.24□□□□□ -1.25
LIMA1-212ENST00000552491 KDM5DQ9BY66 1539 aa7.24□□□□□ -1.25
LIMA1-212ENST00000552491 PER1O15534 1290 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-212ENST00000552491 NBPF1Q3BBV0 1214 aa7.24□□□□□ -1.25
LIMA1-212ENST00000552491 NPM2Q86SE8 214 aaKnown RBP7.24□□□□□ -1.25
LIMA1-212ENST00000552491 PARD3Q8TEW0 1356 aa7.24□□□□□ -1.25
LIMA1-212ENST00000552491 PTPRGP23470 1445 aa7.24□□□□□ -1.25
LIMA1-212ENST00000552491 SHANK2Q9UPX8 1470 aa7.23□□□□□ -1.25
LIMA1-212ENST00000552491 PLIN1O60240 522 aa7.23□□□□□ -1.25
LIMA1-212ENST00000552491 HNRNPMP52272 730 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMA1-212ENST00000552491 METRNQ9UJH8 293 aa7.23□□□□□ -1.25
LIMA1-212ENST00000552491 KTN1Q86UP2 1357 aaKnown RBP7.23□□□□□ -1.25
LIMA1-212ENST00000552491 PDE4AP27815 886 aa7.23□□□□□ -1.25
LIMA1-212ENST00000552491 LCE2DQ5TA82 110 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-212ENST00000552491 NLRP13Q86W25 1043 aa7.23□□□□□ -1.25
LIMA1-212ENST00000552491 TRPM1Q7Z4N2 1603 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms