RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PPP6R1Q9UPN7 881 aa14.36□□□□□ -0.11
LIMA1-211ENST00000552338 A2MP01023 1474 aa14.36□□□□□ -0.11
LIMA1-211ENST00000552338 YEATS2Q9ULM3 1422 aa14.35□□□□□ -0.11
LIMA1-211ENST00000552338 RAB3GAP2Q9H2M9 1393 aa14.34□□□□□ -0.11
LIMA1-211ENST00000552338 DEPDC5O75140 1603 aa14.34□□□□□ -0.11
LIMA1-211ENST00000552338 RNF17Q9BXT8 1623 aaKnown RBP14.33□□□□□ -0.12
LIMA1-211ENST00000552338 KDM5DQ9BY66 1539 aa14.32□□□□□ -0.12
LIMA1-211ENST00000552338 UNC13BO14795 1591 aa14.32□□□□□ -0.12
LIMA1-211ENST00000552338 ADRA2BP18089 450 aa14.31□□□□□ -0.12
LIMA1-211ENST00000552338 VWDEQ8N2E2 1590 aa14.3□□□□□ -0.12
LIMA1-211ENST00000552338 FAM135AQ9P2D6 1515 aa14.29□□□□□ -0.12
LIMA1-211ENST00000552338 MROH1Q8NDA8 1641 aa14.29□□□□□ -0.12
LIMA1-211ENST00000552338 PRDM15P57071 1507 aaPredicted RBP14.28□□□□□ -0.12
LIMA1-211ENST00000552338 SIGLEC1Q9BZZ2 1709 aa14.28□□□□□ -0.12
LIMA1-211ENST00000552338 IQGAP3Q86VI3 1631 aa14.26□□□□□ -0.13
LIMA1-211ENST00000552338 MYT1LQ9UL68 1186 aa14.25□□□□□ -0.13
LIMA1-211ENST00000552338 LMTK2Q8IWU2 1503 aa14.25□□□□□ -0.13
LIMA1-211ENST00000552338 ZC3H13Q5T200 1668 aaKnown RBP14.23□□□□□ -0.13
LIMA1-211ENST00000552338 KIF3BO15066 747 aa14.23□□□□□ -0.13
LIMA1-211ENST00000552338 PZPP20742 1482 aa14.23□□□□□ -0.13
LIMA1-211ENST00000552338 DHX57Q6P158 1386 aaKnown RBP14.22□□□□□ -0.13
LIMA1-211ENST00000552338 TET3O43151 1660 aa14.2□□□□□ -0.14
LIMA1-211ENST00000552338 CLSPNQ9HAW4 1339 aa14.2□□□□□ -0.14
LIMA1-211ENST00000552338 NUP155O75694 1391 aa14.2□□□□□ -0.14
LIMA1-211ENST00000552338 ARHGAP31Q2M1Z3 1444 aa14.18□□□□□ -0.14
LIMA1-211ENST00000552338 MPHOSPH9Q99550 1183 aa14.18□□□□□ -0.14
LIMA1-211ENST00000552338 KANK1Q14678 1352 aa14.18□□□□□ -0.14
LIMA1-211ENST00000552338 MROH2AA6NES4 1674 aa14.17□□□□□ -0.14
LIMA1-211ENST00000552338 ABCC3O15438 1527 aa14.16□□□□□ -0.14
LIMA1-211ENST00000552338 CEP152O94986 1710 aa14.16□□□□□ -0.14
LIMA1-211ENST00000552338 RPRD2Q5VT52 1461 aaKnown RBP14.16□□□□□ -0.14
LIMA1-211ENST00000552338 TRIM52Q96A61 297 aa14.15□□□□□ -0.14
LIMA1-211ENST00000552338 E9PCH4 1651 aa14.14□□□□□ -0.15
LIMA1-211ENST00000552338 ADAMTSL3P82987 1691 aa14.14□□□□□ -0.15
LIMA1-211ENST00000552338 EFCAB6Q5THR3 1501 aa14.14□□□□□ -0.15
LIMA1-211ENST00000552338 CNTLNQ9NXG0 1405 aa14.14□□□□□ -0.15
LIMA1-211ENST00000552338 CAMSAP1Q5T5Y3 1602 aa14.13□□□□□ -0.15
LIMA1-211ENST00000552338 GGT6Q6P531 493 aa14.13□□□□□ -0.15
LIMA1-211ENST00000552338 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
LIMA1-211ENST00000552338 PTPRTO14522 1441 aa14.12□□□□□ -0.15
LIMA1-211ENST00000552338 ANKRD30BQ9BXX2 1392 aa14.11□□□□□ -0.15
LIMA1-211ENST00000552338 WASHC2CQ9Y4E1 1318 aa14.11□□□□□ -0.15
LIMA1-211ENST00000552338 CLTCQ00610 1675 aaKnown RBP14.1□□□□□ -0.15
LIMA1-211ENST00000552338 FER1L4A9Z1Z3 1794 aa14.09□□□□□ -0.15
LIMA1-211ENST00000552338 NPATQ14207 1427 aa14.09□□□□□ -0.15
LIMA1-211ENST00000552338 PKD2Q13563 968 aa14.09□□□□□ -0.15
LIMA1-211ENST00000552338 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.09□□□□□ -0.158e-10■■■□□ 17.1
LIMA1-211ENST00000552338 SPHKAPQ2M3C7 1700 aa14.09□□□□□ -0.15
LIMA1-211ENST00000552338 NOS1P29475 1434 aa14.08□□□□□ -0.15
LIMA1-211ENST00000552338 PLA2R1Q13018 1463 aa14.07□□□□□ -0.16
LIMA1-211ENST00000552338 NEURL4Q96JN8 1562 aa14.07□□□□□ -0.16
LIMA1-211ENST00000552338 ARID4BQ4LE39 1312 aaPredicted RBP14.07□□□□□ -0.16
LIMA1-211ENST00000552338 TRPM2O94759 1503 aa14.06□□□□□ -0.16
LIMA1-211ENST00000552338 SPATA31D1Q6ZQQ2 1576 aa14.06□□□□□ -0.16
LIMA1-211ENST00000552338 PREX1Q8TCU6 1659 aa14.06□□□□□ -0.16
LIMA1-211ENST00000552338 ZMYM3Q14202 1370 aa14.06□□□□□ -0.16
LIMA1-211ENST00000552338 CFAP65Q6ZU64 1925 aaKnown RBP14.05□□□□□ -0.16
LIMA1-211ENST00000552338 SETD1BQ9UPS6 1966 aaKnown RBP14.05□□□□□ -0.16
LIMA1-211ENST00000552338 C3P01024 1663 aa14.04□□□□□ -0.16
LIMA1-211ENST00000552338 PIK3C2BO00750 1634 aa14.04□□□□□ -0.16
LIMA1-211ENST00000552338 MADDQ8WXG6 1647 aa14.04□□□□□ -0.16
LIMA1-211ENST00000552338 POTEDQ86YR6 584 aa14.03□□□□□ -0.16
LIMA1-211ENST00000552338 CCER1Q8TC90 406 aaPredicted RBP14.03□□□□□ -0.16
LIMA1-211ENST00000552338 TIMELESSQ9UNS1 1208 aa14.03□□□□□ -0.16
LIMA1-211ENST00000552338 ERVK-7P63135 1459 aa14.01□□□□□ -0.17
LIMA1-211ENST00000552338 MLECQ14165 292 aa14.01□□□□□ -0.17
LIMA1-211ENST00000552338 KDM5AP29375 1690 aaKnown RBP14.01□□□□□ -0.17
LIMA1-211ENST00000552338 SYNMO15061 1565 aa14□□□□□ -0.17
LIMA1-211ENST00000552338 ESF1Q9H501 851 aaKnown RBP14□□□□□ -0.17
LIMA1-211ENST00000552338 RIMS1Q86UR5 1692 aaKnown RBP14□□□□□ -0.17
LIMA1-211ENST00000552338 SLC52A1Q9NWF4 448 aa13.99□□□□□ -0.17
LIMA1-211ENST00000552338 KIF1BO60333 1816 aa13.98□□□□□ -0.17
LIMA1-211ENST00000552338 CCDC144AA2RUR9 1427 aa13.98□□□□□ -0.17
LIMA1-211ENST00000552338 CLTCL1P53675 1640 aa13.97□□□□□ -0.17
LIMA1-211ENST00000552338 PTPRMP28827 1452 aa13.95□□□□□ -0.18
LIMA1-211ENST00000552338 SPATA31E1Q6ZUB1 1445 aa13.95□□□□□ -0.18
LIMA1-211ENST00000552338 NLRP1Q9C000 1473 aa13.94□□□□□ -0.18
LIMA1-211ENST00000552338 FBXO31Q5XUX0 539 aaPredicted RBP13.94□□□□□ -0.18
LIMA1-211ENST00000552338 STAC3Q96MF2 364 aa13.94□□□□□ -0.18
LIMA1-211ENST00000552338 SIN3AQ96ST3 1273 aa13.94□□□□□ -0.18
LIMA1-211ENST00000552338 ZEB1P37275 1124 aaPredicted RBP13.93□□□□□ -0.18
LIMA1-211ENST00000552338 ADGRB3O60242 1522 aa13.93□□□□□ -0.18
LIMA1-211ENST00000552338 TMEM131LA2VDJ0 1609 aa13.93□□□□□ -0.18
LIMA1-211ENST00000552338 KDM4FA0A1W2PPD8 638 aa13.92□□□□□ -0.18
LIMA1-211ENST00000552338 IDI1Q13907 227 aa13.92□□□□□ -0.18
LIMA1-211ENST00000552338 TNRQ92752 1358 aa13.92□□□□□ -0.18
LIMA1-211ENST00000552338 UGGT1Q9NYU2 1555 aa13.91□□□□□ -0.18
LIMA1-211ENST00000552338 IFT172Q9UG01 1749 aa13.9□□□□□ -0.18
LIMA1-211ENST00000552338 ZNF142P52746 1687 aaPredicted RBP13.9□□□□□ -0.18
LIMA1-211ENST00000552338 MYO5BQ9ULV0 1848 aa13.9□□□□□ -0.18
LIMA1-211ENST00000552338 CEBPAP49715 358 aaPredicted RBP13.89□□□□□ -0.19
LIMA1-211ENST00000552338 UBR1Q8IWV7 1749 aa13.89□□□□□ -0.19
LIMA1-211ENST00000552338 RPGRIP1LQ68CZ1 1315 aa13.89□□□□□ -0.19
LIMA1-211ENST00000552338 MYO3AQ8NEV4 1616 aa13.88□□□□□ -0.19
LIMA1-211ENST00000552338 PPLO60437 1756 aa13.87□□□□□ -0.19
LIMA1-211ENST00000552338 ZFYVE9O95405 1425 aa13.87□□□□□ -0.19
LIMA1-211ENST00000552338 A2ML1A8K2U0 1454 aa13.87□□□□□ -0.19
LIMA1-211ENST00000552338 UHRF1BP1Q6BDS2 1440 aa13.85□□□□□ -0.19
LIMA1-211ENST00000552338 PPP1R15AO75807 674 aaPredicted RBP13.85□□□□□ -0.19
LIMA1-211ENST00000552338 NEUROD1Q13562 356 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms