RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PHF14O94880 888 aa11.7□□□□□ -0.54
LIMA1-210ENST00000552045 FLIIQ13045 1269 aa11.7□□□□□ -0.54
LIMA1-210ENST00000552045 EPAS1Q99814 870 aa11.7□□□□□ -0.54
LIMA1-210ENST00000552045 REPIN1Q9BWE0 567 aaKnown RBP11.7□□□□□ -0.54
LIMA1-210ENST00000552045 CDHR5Q9HBB8 845 aa11.7□□□□□ -0.54
LIMA1-210ENST00000552045 NPDC1Q9NQX5 325 aaPredicted RBP11.7□□□□□ -0.54
LIMA1-210ENST00000552045 LHX8Q68G74 356 aa11.68□□□□□ -0.54
LIMA1-210ENST00000552045 SLAIN1Q8ND83 568 aa11.68□□□□□ -0.54
LIMA1-210ENST00000552045 MAP3K7O43318 606 aa11.66□□□□□ -0.54
LIMA1-210ENST00000552045 TMUB1Q9BVT8 246 aa11.66□□□□□ -0.54
LIMA1-210ENST00000552045 CLCN1P35523 988 aa11.65□□□□□ -0.54
LIMA1-210ENST00000552045 PCMTD1Q96MG8 357 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-210ENST00000552045 ONECUT3O60422 494 aaPredicted RBP11.64□□□□□ -0.55
LIMA1-210ENST00000552045 PCDHGA10Q9Y5H3 936 aa11.64□□□□□ -0.55
LIMA1-210ENST00000552045 UBTFP17480 764 aaKnown RBP11.63□□□□□ -0.55
LIMA1-210ENST00000552045 RBM33Q96EV2 1170 aaKnown RBP11.63□□□□□ -0.55
LIMA1-210ENST00000552045 OTUD5Q96G74 571 aa11.63□□□□□ -0.55
LIMA1-210ENST00000552045 PHOX2BQ99453 314 aa11.62□□□□□ -0.55
LIMA1-210ENST00000552045 GPCPD1Q9NPB8 672 aa11.62□□□□□ -0.55
LIMA1-210ENST00000552045 MDM2Q00987 491 aaPredicted RBP11.61□□□□□ -0.55
LIMA1-210ENST00000552045 TSR1Q2NL82 804 aaKnown RBP11.61□□□□□ -0.55
LIMA1-210ENST00000552045 SH3D19Q5HYK7 790 aa11.61□□□□□ -0.55
LIMA1-210ENST00000552045 TYW1BQ6NUM6 668 aa11.61□□□□□ -0.55
LIMA1-210ENST00000552045 C1orf115Q9H7X2 142 aa11.6□□□□□ -0.55
LIMA1-210ENST00000552045 PCDHGA4Q9Y5G9 962 aa11.59□□□□□ -0.55
LIMA1-210ENST00000552045 SSTR3P32745 418 aaPredicted RBP11.58□□□□□ -0.56
LIMA1-210ENST00000552045 FBXW7Q969H0 707 aa11.58□□□□□ -0.56
LIMA1-210ENST00000552045 DOK7Q18PE1 504 aa11.57□□□□□ -0.56
LIMA1-210ENST00000552045 SKIV2LQ15477 1246 aaKnown RBP11.56□□□□□ -0.56
LIMA1-210ENST00000552045 JPH4Q96JJ6 628 aa11.56□□□□□ -0.56
LIMA1-210ENST00000552045 HOXB3P14651 431 aaPredicted RBP11.55□□□□□ -0.56
LIMA1-210ENST00000552045 ARID3AQ99856 593 aa11.55□□□□□ -0.56
LIMA1-210ENST00000552045 KDM4FA0A1W2PPD8 638 aa11.54□□□□□ -0.56
LIMA1-210ENST00000552045 A6NJR5 290 aa11.54□□□□□ -0.56
LIMA1-210ENST00000552045 ARID3CA6NKF2 412 aa11.54□□□□□ -0.56
LIMA1-210ENST00000552045 APBB1O00213 710 aa11.54□□□□□ -0.56
LIMA1-210ENST00000552045 OATP04181 439 aa11.54□□□□□ -0.56
LIMA1-210ENST00000552045 METTL3Q86U44 580 aaKnown RBP11.54□□□□□ -0.56
LIMA1-210ENST00000552045 SNPHO15079 494 aa11.53□□□□□ -0.56
LIMA1-210ENST00000552045 FAM161AQ3B820 660 aa11.53□□□□□ -0.56
LIMA1-210ENST00000552045 CERKQ8TCT0 537 aa11.53□□□□□ -0.56
LIMA1-210ENST00000552045 BEGAINQ9BUH8 593 aa11.53□□□□□ -0.56
LIMA1-210ENST00000552045 FAM217BQ9NTX9 383 aaPredicted RBP11.53□□□□□ -0.56
LIMA1-210ENST00000552045 RIMBP2O15034 1052 aa11.52□□□□□ -0.57
LIMA1-210ENST00000552045 ZSWIM6Q9HCJ5 1215 aa11.52□□□□□ -0.57
LIMA1-210ENST00000552045 FOSBP53539 338 aa11.51□□□□□ -0.57
LIMA1-210ENST00000552045 MCM6Q14566 821 aa11.51□□□□□ -0.57
LIMA1-210ENST00000552045 CLUAP1Q96AJ1 413 aa11.51□□□□□ -0.57
LIMA1-210ENST00000552045 PADI6Q6TGC4 694 aa11.5□□□□□ -0.57
LIMA1-210ENST00000552045 PXYLP1Q8TE99 480 aa11.5□□□□□ -0.57
LIMA1-210ENST00000552045 ADGRG1Q9Y653 693 aa11.5□□□□□ -0.57
LIMA1-210ENST00000552045 TRAK2O60296 914 aa11.49□□□□□ -0.57
LIMA1-210ENST00000552045 C6orf132Q5T0Z8 1188 aa11.49□□□□□ -0.57
LIMA1-210ENST00000552045 PROCA1Q8NCQ7 364 aaPredicted RBP11.48□□□□□ -0.57
LIMA1-210ENST00000552045 NLRP7Q8WX94 980 aa11.48□□□□□ -0.57
LIMA1-210ENST00000552045 ZNF710Q8N1W2 664 aa11.47□□□□□ -0.57
LIMA1-210ENST00000552045 ZDHHC16Q969W1 377 aa11.47□□□□□ -0.57
LIMA1-210ENST00000552045 RBM27Q9P2N5 1060 aaKnown RBP11.47□□□□□ -0.57
LIMA1-210ENST00000552045 TTC13Q8NBP0 860 aa11.46□□□□□ -0.57
LIMA1-210ENST00000552045 POLR3EQ9NVU0 708 aa11.46□□□□□ -0.57
LIMA1-210ENST00000552045 GPR153Q6NV75 609 aa11.45□□□□□ -0.58
LIMA1-210ENST00000552045 ZNF454Q8N9F8 522 aa11.45□□□□□ -0.58
LIMA1-210ENST00000552045 ATP1B4Q9UN42 357 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-210ENST00000552045 MYSM1Q5VVJ2 828 aa11.44□□□□□ -0.58
LIMA1-210ENST00000552045 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.44□□□□□ -0.58
LIMA1-210ENST00000552045 ARSIQ5FYB1 569 aa11.43□□□□□ -0.58
LIMA1-210ENST00000552045 ADAM33Q9BZ11 813 aa11.41□□□□□ -0.58
LIMA1-210ENST00000552045 PODXL2Q9NZ53 605 aa11.41□□□□□ -0.58
LIMA1-210ENST00000552045 NUDT7P0C024 238 aa11.4□□□□□ -0.58
LIMA1-210ENST00000552045 HOXB1P14653 301 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-210ENST00000552045 CLK2P49760 499 aaKnown RBP11.4□□□□□ -0.58
LIMA1-210ENST00000552045 PRSS12P56730 875 aa11.4□□□□□ -0.58
LIMA1-210ENST00000552045 RBM46Q8TBY0 533 aaKnown RBP11.4□□□□□ -0.58
LIMA1-210ENST00000552045 KHSRPQ92945 711 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIMA1-210ENST00000552045 DIXDC1Q155Q3 683 aa11.39□□□□□ -0.59
LIMA1-210ENST00000552045 PROSER2Q86WR7 435 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-210ENST00000552045 CCDC82Q8N4S0 544 aa11.39□□□□□ -0.59
LIMA1-210ENST00000552045 TBC1D2Q9BYX2 928 aa11.39□□□□□ -0.59
LIMA1-210ENST00000552045 CDCA7LQ96GN5 454 aa11.38□□□□□ -0.59
LIMA1-210ENST00000552045 SPDYE5A6NIY4 337 aa11.37□□□□□ -0.59
LIMA1-210ENST00000552045 POM121Q96HA1 1249 aa11.37□□□□□ -0.59
LIMA1-210ENST00000552045 RAD21O60216 631 aa11.36□□□□□ -0.59
LIMA1-210ENST00000552045 FNBP4Q8N3X1 1017 aaPredicted RBP11.36□□□□□ -0.59
LIMA1-210ENST00000552045 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.35□□□□□ -0.59
LIMA1-210ENST00000552045 TRIM26Q12899 539 aaPredicted RBP11.35□□□□□ -0.59
LIMA1-210ENST00000552045 RFC5P40937 340 aa11.34□□□□□ -0.59
LIMA1-210ENST00000552045 BANK1Q8NDB2 785 aa11.34□□□□□ -0.59
LIMA1-210ENST00000552045 ZNF777Q9ULD5 760 aaPredicted RBP11.34□□□□□ -0.59
LIMA1-210ENST00000552045 RCCD1A6NED2 376 aa11.32□□□□□ -0.6
LIMA1-210ENST00000552045 EYA1Q99502 592 aa11.32□□□□□ -0.6
LIMA1-210ENST00000552045 FAM198AQ9UFP1 575 aa11.32□□□□□ -0.6
LIMA1-210ENST00000552045 LIMD1Q9UGP4 676 aa11.32□□□□□ -0.6
LIMA1-210ENST00000552045 ST18O60284 1047 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 FBXO31Q5XUX0 539 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-210ENST00000552045 PPP2R2DQ66LE6 453 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 SPIRE2Q8WWL2 714 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 SNRKQ9NRH2 765 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 LHX6Q9UPM6 363 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 COG6Q9Y2V7 657 aa11.31□□□□□ -0.6
LIMA1-210ENST00000552045 PSDA5PKW4 1024 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms