RNA–Protein interactions for RNA: ENST00000552003.1

SLC48A1-209, Transcript of solute carrier family 48 member 1, humanhuman

TSL 3

Gene SLC48A1, Length 882 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC48A1-209ENST00000552003 ATP7AQ04656 1500 aa17.31■□□□□ 0.36
SLC48A1-209ENST00000552003 ARHGAP35Q9NRY4 1499 aa17.31■□□□□ 0.36
SLC48A1-209ENST00000552003 ANKLE2Q86XL3 938 aa17.3■□□□□ 0.36
SLC48A1-209ENST00000552003 TNRQ92752 1358 aa17.29■□□□□ 0.36
SLC48A1-209ENST00000552003 DEPDC5O75140 1603 aa17.29■□□□□ 0.36
SLC48A1-209ENST00000552003 XIRP1Q702N8 1843 aaKnown RBP17.28■□□□□ 0.36
SLC48A1-209ENST00000552003 ZNF777Q9ULD5 760 aaPredicted RBP17.28■□□□□ 0.36
SLC48A1-209ENST00000552003 IQGAP1P46940 1657 aa17.27■□□□□ 0.36
SLC48A1-209ENST00000552003 SYNMO15061 1565 aa17.25■□□□□ 0.35
SLC48A1-209ENST00000552003 UPF1Q92900 1129 aaKnown RBP eCLIP17.25■□□□□ 0.35
SLC48A1-209ENST00000552003 GPATCH8Q9UKJ3 1502 aaKnown RBP17.23■□□□□ 0.35
SLC48A1-209ENST00000552003 THEMISQ8N1K5 641 aaPredicted RBP17.22■□□□□ 0.35
SLC48A1-209ENST00000552003 PZPP20742 1482 aa17.22■□□□□ 0.35
SLC48A1-209ENST00000552003 ZC3H13Q5T200 1668 aaKnown RBP17.22■□□□□ 0.35
SLC48A1-209ENST00000552003 UGGT1Q9NYU2 1555 aa17.21■□□□□ 0.35
SLC48A1-209ENST00000552003 ADGBQ8N7X0 1667 aa17.2■□□□□ 0.34
SLC48A1-209ENST00000552003 FAM135BQ49AJ0 1406 aa17.2■□□□□ 0.34
SLC48A1-209ENST00000552003 MIA2Q96PC5 1412 aa17.2■□□□□ 0.34
SLC48A1-209ENST00000552003 EEA1Q15075 1411 aa17.19■□□□□ 0.34
SLC48A1-209ENST00000552003 KIAA1107Q9UPP5 1409 aa17.19■□□□□ 0.34
SLC48A1-209ENST00000552003 EHMT2Q96KQ7 1210 aa17.18■□□□□ 0.34
SLC48A1-209ENST00000552003 NLRP1Q9C000 1473 aa17.17■□□□□ 0.34
SLC48A1-209ENST00000552003 FAM135AQ9P2D6 1515 aa17.16■□□□□ 0.34
SLC48A1-209ENST00000552003 KDM5DQ9BY66 1539 aa17.13■□□□□ 0.33
SLC48A1-209ENST00000552003 ROBO1Q9Y6N7 1651 aa17.13■□□□□ 0.33
SLC48A1-209ENST00000552003 DHX29Q7Z478 1369 aaKnown RBP17.13■□□□□ 0.33
SLC48A1-209ENST00000552003 ZNF644Q9H582 1327 aaPredicted RBP17.12■□□□□ 0.33
SLC48A1-209ENST00000552003 KIF3BO15066 747 aa17.11■□□□□ 0.33
SLC48A1-209ENST00000552003 CASKIN1Q8WXD9 1431 aa17.11■□□□□ 0.33
SLC48A1-209ENST00000552003 CCDC18Q5T9S5 1454 aa17.11■□□□□ 0.33
SLC48A1-209ENST00000552003 MBD5Q9P267 1494 aa17.1■□□□□ 0.33
SLC48A1-209ENST00000552003 UBTFP17480 764 aaKnown RBP17.09■□□□□ 0.33
SLC48A1-209ENST00000552003 LTKP29376 864 aa17.09■□□□□ 0.33
SLC48A1-209ENST00000552003 CFDP1Q9UEE9 299 aaPredicted RBP17.09■□□□□ 0.33
SLC48A1-209ENST00000552003 PLEKHH2Q8IVE3 1493 aa17.09■□□□□ 0.33
SLC48A1-209ENST00000552003 WASHC2CQ9Y4E1 1318 aa17.08■□□□□ 0.32
SLC48A1-209ENST00000552003 TRIM52Q96A61 297 aa17.08■□□□□ 0.32
SLC48A1-209ENST00000552003 LRP6O75581 1613 aa17.07■□□□□ 0.32
SLC48A1-209ENST00000552003 RBM33Q96EV2 1170 aaKnown RBP17.06■□□□□ 0.32
SLC48A1-209ENST00000552003 MAP3K1Q13233 1512 aa17.06■□□□□ 0.32
SLC48A1-209ENST00000552003 NCOA2Q15596 1464 aa17.05■□□□□ 0.32
SLC48A1-209ENST00000552003 UBR1Q8IWV7 1749 aa17.05■□□□□ 0.32
SLC48A1-209ENST00000552003 RTEL1-TNFRSF6BF6WH68 1400 aa17.04■□□□□ 0.32
SLC48A1-209ENST00000552003 TMEM94Q12767 1356 aa17.04■□□□□ 0.32
SLC48A1-209ENST00000552003 SCAF11Q99590 1463 aaKnown RBP17.04■□□□□ 0.32
SLC48A1-209ENST00000552003 ARHGAP23Q9P227 1491 aa17.02■□□□□ 0.32
SLC48A1-209ENST00000552003 PHLPP1O60346 1717 aa17.01■□□□□ 0.31
SLC48A1-209ENST00000552003 CFAP65Q6ZU64 1925 aaKnown RBP17.01■□□□□ 0.31
SLC48A1-209ENST00000552003 JCADQ9P266 1359 aa17.01■□□□□ 0.31
SLC48A1-209ENST00000552003 ERVK-7P63135 1459 aa17■□□□□ 0.31
SLC48A1-209ENST00000552003 CCNB3Q8WWL7 1395 aa17■□□□□ 0.31
SLC48A1-209ENST00000552003 SLIT1O75093 1534 aa16.98■□□□□ 0.31
SLC48A1-209ENST00000552003 TXNDC2Q86VQ3 553 aa16.98■□□□□ 0.31
SLC48A1-209ENST00000552003 COL16A1Q07092 1604 aaPredicted RBP16.98■□□□□ 0.31
SLC48A1-209ENST00000552003 ABCC3O15438 1527 aa16.97■□□□□ 0.31
SLC48A1-209ENST00000552003 TIAM1Q13009 1591 aa16.96■□□□□ 0.31
SLC48A1-209ENST00000552003 FYCO1Q9BQS8 1478 aa16.95■□□□□ 0.3
SLC48A1-209ENST00000552003 ZNF772Q68DY9 489 aaPredicted RBP16.94■□□□□ 0.3
SLC48A1-209ENST00000552003 KCNA6P17658 529 aa16.93■□□□□ 0.3
SLC48A1-209ENST00000552003 RXRBP28702 533 aa16.93■□□□□ 0.3
SLC48A1-209ENST00000552003 LRRC9Q6ZRR7 1453 aa16.93■□□□□ 0.3
SLC48A1-209ENST00000552003 PROSER2Q86WR7 435 aaPredicted RBP16.92■□□□□ 0.3
SLC48A1-209ENST00000552003 SLAIN2Q9P270 581 aa16.92■□□□□ 0.3
SLC48A1-209ENST00000552003 PRDM15P57071 1507 aaPredicted RBP16.91■□□□□ 0.3
SLC48A1-209ENST00000552003 CDK12Q9NYV4 1490 aaPredicted RBP16.91■□□□□ 0.3
SLC48A1-209ENST00000552003 MROH1Q8NDA8 1641 aa16.9■□□□□ 0.3
SLC48A1-209ENST00000552003 TET3O43151 1660 aa16.9■□□□□ 0.3
SLC48A1-209ENST00000552003 CCDC141Q6ZP82 1450 aa16.89■□□□□ 0.29
SLC48A1-209ENST00000552003 SPATA31A6Q5VVP1 1343 aa16.89■□□□□ 0.29
SLC48A1-209ENST00000552003 CEP152O94986 1710 aa16.88■□□□□ 0.29
SLC48A1-209ENST00000552003 SLC26A8Q96RN1 970 aa16.88■□□□□ 0.29
SLC48A1-209ENST00000552003 SETBP1Q9Y6X0 1596 aa16.88■□□□□ 0.29
SLC48A1-209ENST00000552003 MEX3CQ5U5Q3 659 aaKnown RBP16.87■□□□□ 0.29
SLC48A1-209ENST00000552003 RGS12O14924 1447 aa16.87■□□□□ 0.29
SLC48A1-209ENST00000552003 TMEM2Q9UHN6 1383 aa16.86■□□□□ 0.29
SLC48A1-209ENST00000552003 FGD6Q6ZV73 1430 aa16.86■□□□□ 0.29
SLC48A1-209ENST00000552003 NWD1Q149M9 1564 aa16.85■□□□□ 0.29
SLC48A1-209ENST00000552003 PIK3C2BO00750 1634 aa16.85■□□□□ 0.29
SLC48A1-209ENST00000552003 SHPRHQ149N8 1683 aa16.85■□□□□ 0.29
SLC48A1-209ENST00000552003 EID1Q9Y6B2 187 aa16.84■□□□□ 0.29
SLC48A1-209ENST00000552003 CAMSAP2Q08AD1 1489 aa16.84■□□□□ 0.29
SLC48A1-209ENST00000552003 MSH6P52701 1360 aa16.83■□□□□ 0.28
SLC48A1-209ENST00000552003 MTUS2Q5JR59 1369 aa16.83■□□□□ 0.28
SLC48A1-209ENST00000552003 NKTRP30414 1462 aaKnown RBP16.82■□□□□ 0.28
SLC48A1-209ENST00000552003 DIP2AQ14689 1571 aa16.81■□□□□ 0.28
SLC48A1-209ENST00000552003 AFF2P51816 1311 aa16.81■□□□□ 0.28
SLC48A1-209ENST00000552003 KDM5AP29375 1690 aaKnown RBP16.81■□□□□ 0.28
SLC48A1-209ENST00000552003 AHDC1Q5TGY3 1603 aaPredicted RBP16.81■□□□□ 0.28
SLC48A1-209ENST00000552003 NUTM2BA6NNL0 878 aaPredicted RBP16.79■□□□□ 0.28
SLC48A1-209ENST00000552003 NUTM2EB1AL46 878 aaPredicted RBP16.79■□□□□ 0.28
SLC48A1-209ENST00000552003 NUTM2AQ8IVF1 878 aaPredicted RBP16.79■□□□□ 0.28
SLC48A1-209ENST00000552003 EP400Q96L91 3159 aa16.79■□□□□ 0.28
SLC48A1-209ENST00000552003 CEP162Q5TB80 1403 aa16.77■□□□□ 0.27
SLC48A1-209ENST00000552003 ARHGEF5Q12774 1597 aa16.77■□□□□ 0.27
SLC48A1-209ENST00000552003 MAST1Q9Y2H9 1570 aa16.77■□□□□ 0.27
SLC48A1-209ENST00000552003 RSPH4AQ5TD94 716 aa16.76■□□□□ 0.27
SLC48A1-209ENST00000552003 EIF2AK4Q9P2K8 1649 aaKnown RBP16.76■□□□□ 0.27
SLC48A1-209ENST00000552003 ARHGAP31Q2M1Z3 1444 aa16.76■□□□□ 0.27
SLC48A1-209ENST00000552003 CHD2O14647 1828 aaKnown RBP16.75■□□□□ 0.27
SLC48A1-209ENST00000552003 EFCAB6Q5THR3 1501 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms