RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 ERBINQ96RT1 1412 aa39.74■■■■□ 3.95
CPSF6-205ENST00000550075 CHIC2Q9UKJ5 165 aa39.73■■■■□ 3.95
CPSF6-205ENST00000550075 RRP7BPQ9NSQ0 103 aa39.71■■■■□ 3.95
CPSF6-205ENST00000550075 KDM5DQ9BY66 1539 aa39.7■■■■□ 3.95
CPSF6-205ENST00000550075 NCOA1Q15788 1441 aa39.69■■■■□ 3.94
CPSF6-205ENST00000550075 RRBP1Q9P2E9 1410 aaKnown RBP39.68■■■■□ 3.94
CPSF6-205ENST00000550075 CEBPAP49715 358 aaPredicted RBP39.68■■■■□ 3.94
CPSF6-205ENST00000550075 PREX1Q8TCU6 1659 aa39.64■■■■□ 3.94
CPSF6-205ENST00000550075 ZMYM3Q14202 1370 aa39.63■■■■□ 3.93
CPSF6-205ENST00000550075 ZC3H13Q5T200 1668 aaKnown RBP39.62■■■■□ 3.93
CPSF6-205ENST00000550075 SETD1BQ9UPS6 1966 aaKnown RBP39.61■■■■□ 3.93
CPSF6-205ENST00000550075 LMTK3Q96Q04 1460 aa39.6■■■■□ 3.93
CPSF6-205ENST00000550075 NPATQ14207 1427 aa39.58■■■■□ 3.93
CPSF6-205ENST00000550075 WASHC2CQ9Y4E1 1318 aa39.58■■■■□ 3.93
CPSF6-205ENST00000550075 MROH1Q8NDA8 1641 aa39.58■■■■□ 3.93
CPSF6-205ENST00000550075 PTPRKQ15262 1439 aa39.57■■■■□ 3.93
CPSF6-205ENST00000550075 ROCK1Q13464 1354 aa39.57■■■■□ 3.92
CPSF6-205ENST00000550075 PRDM15P57071 1507 aaPredicted RBP39.55■■■■□ 3.92
CPSF6-205ENST00000550075 DEPDC5O75140 1603 aa39.54■■■■□ 3.92
CPSF6-205ENST00000550075 UHRF1BP1Q6BDS2 1440 aa39.54■■■■□ 3.92
CPSF6-205ENST00000550075 ABCC3O15438 1527 aa39.52■■■■□ 3.92
CPSF6-205ENST00000550075 ITGAEP38570 1179 aa39.52■■■■□ 3.92
CPSF6-205ENST00000550075 ANKRD50Q9ULJ7 1429 aa39.5■■■■□ 3.91
CPSF6-205ENST00000550075 PZPP20742 1482 aa39.48■■■■□ 3.91
CPSF6-205ENST00000550075 KANK1Q14678 1352 aa39.46■■■■□ 3.91
CPSF6-205ENST00000550075 CEP152O94986 1710 aa39.46■■■■□ 3.91
CPSF6-205ENST00000550075 CAMSAP1Q5T5Y3 1602 aa39.42■■■■□ 3.9
CPSF6-205ENST00000550075 MYO3AQ8NEV4 1616 aa39.39■■■■□ 3.9
CPSF6-205ENST00000550075 GRWD1Q9BQ67 446 aaKnown RBP eCLIP39.38■■■■□ 3.891e-6■□□□□ 10.5
CPSF6-205ENST00000550075 VWDEQ8N2E2 1590 aa39.33■■■■□ 3.89
CPSF6-205ENST00000550075 ZNF142P52746 1687 aaPredicted RBP39.33■■■■□ 3.89
CPSF6-205ENST00000550075 HSPA2P54652 639 aa39.33■■■■□ 3.89
CPSF6-205ENST00000550075 TNRQ92752 1358 aa39.32■■■■□ 3.88
CPSF6-205ENST00000550075 LMTK2Q8IWU2 1503 aa39.31■■■■□ 3.88
CPSF6-205ENST00000550075 UNC13BO14795 1591 aa39.31■■■■□ 3.88
CPSF6-205ENST00000550075 ARHGAP31Q2M1Z3 1444 aa39.28■■■■□ 3.88
CPSF6-205ENST00000550075 CEP170BQ9Y4F5 1589 aaPredicted RBP39.28■■■■□ 3.88
CPSF6-205ENST00000550075 FBXO31Q5XUX0 539 aaPredicted RBP39.26■■■■□ 3.88
CPSF6-205ENST00000550075 GCC2Q8IWJ2 1684 aa39.25■■■■□ 3.87
CPSF6-205ENST00000550075 SPATA31D1Q6ZQQ2 1576 aa39.25■■■■□ 3.87
CPSF6-205ENST00000550075 ERVK-7P63135 1459 aa39.24■■■■□ 3.87
CPSF6-205ENST00000550075 EFCAB6Q5THR3 1501 aa39.21■■■■□ 3.87
CPSF6-205ENST00000550075 A2ML1A8K2U0 1454 aa39.21■■■■□ 3.87
CPSF6-205ENST00000550075 NLRP1Q9C000 1473 aa39.2■■■■□ 3.87
CPSF6-205ENST00000550075 TET3O43151 1660 aa39.17■■■■□ 3.86
CPSF6-205ENST00000550075 NAIPQ13075 1403 aa39.16■■■■□ 3.86
CPSF6-205ENST00000550075 CFAP65Q6ZU64 1925 aaKnown RBP39.16■■■■□ 3.86
CPSF6-205ENST00000550075 HFM1A2PYH4 1435 aa39.15■■■■□ 3.86
CPSF6-205ENST00000550075 IQGAP3Q86VI3 1631 aa39.15■■■■□ 3.86
CPSF6-205ENST00000550075 RPRD2Q5VT52 1461 aaKnown RBP39.11■■■■□ 3.85
CPSF6-205ENST00000550075 NUP155O75694 1391 aa39.08■■■■□ 3.85
CPSF6-205ENST00000550075 PLA2R1Q13018 1463 aa39.07■■■■□ 3.85
CPSF6-205ENST00000550075 STRCQ7RTU9 1775 aa39.07■■■■□ 3.84
CPSF6-205ENST00000550075 UGGT1Q9NYU2 1555 aa39.04■■■■□ 3.84
CPSF6-205ENST00000550075 DMRT2Q9Y5R5 561 aa39.02■■■■□ 3.84
CPSF6-205ENST00000550075 NOS1P29475 1434 aa38.98■■■■□ 3.83
CPSF6-205ENST00000550075 E9PCH4 1651 aa38.97■■■■□ 3.83
CPSF6-205ENST00000550075 THEMISQ8N1K5 641 aaPredicted RBP38.96■■■■□ 3.83
CPSF6-205ENST00000550075 SYNMO15061 1565 aa38.95■■■■□ 3.83
CPSF6-205ENST00000550075 UBR1Q8IWV7 1749 aa38.92■■■■□ 3.82
CPSF6-205ENST00000550075 PTPRTO14522 1441 aa38.92■■■■□ 3.82
CPSF6-205ENST00000550075 PKD2Q13563 968 aa38.92■■■■□ 3.82
CPSF6-205ENST00000550075 POLR1AO95602 1720 aaPredicted RBP38.91■■■■□ 3.82
CPSF6-205ENST00000550075 PIK3C2BO00750 1634 aa38.9■■■■□ 3.82
CPSF6-205ENST00000550075 KDM5AP29375 1690 aaKnown RBP38.88■■■■□ 3.81
CPSF6-205ENST00000550075 TRIM52Q96A61 297 aa38.85■■■■□ 3.81
CPSF6-205ENST00000550075 SLC52A1Q9NWF4 448 aa38.85■■■■□ 3.81
CPSF6-205ENST00000550075 NCKAP5LQ9HCH0 1330 aa38.85■■■■□ 3.81
CPSF6-205ENST00000550075 STAG3Q9UJ98 1225 aa38.82■■■■□ 3.8
CPSF6-205ENST00000550075 ADGRB3O60242 1522 aa38.81■■■■□ 3.8
CPSF6-205ENST00000550075 ANKLE2Q86XL3 938 aa38.8■■■■□ 3.8
CPSF6-205ENST00000550075 ACIN1Q9UKV3 1341 aaKnown RBP38.79■■■■□ 3.8
CPSF6-205ENST00000550075 IDI1Q13907 227 aa38.78■■■■□ 3.8
CPSF6-205ENST00000550075 SETD5Q9C0A6 1442 aa38.78■■■■□ 3.8
CPSF6-205ENST00000550075 SPHKAPQ2M3C7 1700 aa38.77■■■■□ 3.8
CPSF6-205ENST00000550075 NEURL4Q96JN8 1562 aa38.76■■■■□ 3.8
CPSF6-205ENST00000550075 SLIT1O75093 1534 aa38.75■■■■□ 3.79
CPSF6-205ENST00000550075 ARHGAP23Q9P227 1491 aa38.73■■■■□ 3.79
CPSF6-205ENST00000550075 MED14O60244 1454 aa38.69■■■■□ 3.78
CPSF6-205ENST00000550075 SCAF11Q99590 1463 aaKnown RBP38.69■■■■□ 3.78
CPSF6-205ENST00000550075 SLC4A1APQ9BWU0 796 aaKnown RBP38.69■■■■□ 3.78
CPSF6-205ENST00000550075 TMEM2Q9UHN6 1383 aa38.67■■■■□ 3.78
CPSF6-205ENST00000550075 NPHP4O75161 1426 aaPredicted RBP38.66■■■■□ 3.78
CPSF6-205ENST00000550075 IQGAP1P46940 1657 aa38.65■■■■□ 3.78
CPSF6-205ENST00000550075 EID1Q9Y6B2 187 aa38.65■■■■□ 3.78
CPSF6-205ENST00000550075 TRPM2O94759 1503 aa38.64■■■■□ 3.78
CPSF6-205ENST00000550075 TMEM131LA2VDJ0 1609 aa38.64■■■■□ 3.78
CPSF6-205ENST00000550075 RAB3GAP2Q9H2M9 1393 aa38.62■■■■□ 3.77
CPSF6-205ENST00000550075 MYO5BQ9ULV0 1848 aa38.61■■■■□ 3.77
CPSF6-205ENST00000550075 TXNDC2Q86VQ3 553 aa38.59■■■■□ 3.77
CPSF6-205ENST00000550075 CHGAP10645 457 aaKnown RBP38.57■■■■□ 3.76
CPSF6-205ENST00000550075 CLTCL1P53675 1640 aa38.53■■■■□ 3.76
CPSF6-205ENST00000550075 LTKP29376 864 aa38.52■■■■□ 3.76
CPSF6-205ENST00000550075 MPHOSPH9Q99550 1183 aa38.51■■■■□ 3.76
CPSF6-205ENST00000550075 LTBP4Q8N2S1 1624 aa38.5■■■■□ 3.75
CPSF6-205ENST00000550075 HDGFP51858 240 aaKnown RBP38.5■■■■□ 3.75
CPSF6-205ENST00000550075 RIMS2Q9UQ26 1411 aa38.49■■■■□ 3.75
CPSF6-205ENST00000550075 ZFYVE9O95405 1425 aa38.48■■■■□ 3.75
CPSF6-205ENST00000550075 KIF1BO60333 1816 aa38.47■■■■□ 3.75
CPSF6-205ENST00000550075 ZNF335Q9H4Z2 1342 aaPredicted RBP38.47■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms