RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CAMSAP1Q5T5Y3 1602 aa25.52■■□□□ 1.68
VPS29-207ENST00000549970 FAM135AQ9P2D6 1515 aa25.51■■□□□ 1.67
VPS29-207ENST00000549970 ZNF142P52746 1687 aaPredicted RBP25.51■■□□□ 1.67
VPS29-207ENST00000549970 CEP170BQ9Y4F5 1589 aaPredicted RBP25.5■■□□□ 1.67
VPS29-207ENST00000549970 FGD6Q6ZV73 1430 aa25.49■■□□□ 1.67
VPS29-207ENST00000549970 CERKQ8TCT0 537 aa25.49■■□□□ 1.67
VPS29-207ENST00000549970 PTPRTO14522 1441 aa25.48■■□□□ 1.67
VPS29-207ENST00000549970 ABCC5O15440 1437 aa25.47■■□□□ 1.67
VPS29-207ENST00000549970 CROCC2H7BZ55 1655 aa25.47■■□□□ 1.67
VPS29-207ENST00000549970 RNF17Q9BXT8 1623 aaKnown RBP25.47■■□□□ 1.67
VPS29-207ENST00000549970 FBXO31Q5XUX0 539 aaPredicted RBP25.46■■□□□ 1.67
VPS29-207ENST00000549970 PZPP20742 1482 aa25.46■■□□□ 1.67
VPS29-207ENST00000549970 EIF2AK4Q9P2K8 1649 aaKnown RBP25.45■■□□□ 1.67
VPS29-207ENST00000549970 SHANK2Q9UPX8 1470 aa25.45■■□□□ 1.66
VPS29-207ENST00000549970 DUOX2Q9NRD8 1548 aa25.44■■□□□ 1.66
VPS29-207ENST00000549970 TCOF1Q13428 1488 aaKnown RBP25.44■■□□□ 1.66
VPS29-207ENST00000549970 TNRQ92752 1358 aa25.44■■□□□ 1.66
VPS29-207ENST00000549970 DNMT1P26358 1616 aaKnown RBP25.43■■□□□ 1.66
VPS29-207ENST00000549970 DAPK1P53355 1430 aa25.43■■□□□ 1.66
VPS29-207ENST00000549970 KIF15Q9NS87 1388 aa25.43■■□□□ 1.66
VPS29-207ENST00000549970 NCKAP5LQ9HCH0 1330 aa25.42■■□□□ 1.66
VPS29-207ENST00000549970 A2ML1A8K2U0 1454 aa25.41■■□□□ 1.66
VPS29-207ENST00000549970 PLA2R1Q13018 1463 aa25.4■■□□□ 1.66
VPS29-207ENST00000549970 RRP7BPQ9NSQ0 103 aa25.4■■□□□ 1.66
VPS29-207ENST00000549970 ABCC3O15438 1527 aa25.4■■□□□ 1.66
VPS29-207ENST00000549970 MROH1Q8NDA8 1641 aa25.39■■□□□ 1.66
VPS29-207ENST00000549970 ZC3H13Q5T200 1668 aaKnown RBP25.39■■□□□ 1.65
VPS29-207ENST00000549970 PKD2Q13563 968 aa25.36■■□□□ 1.65
VPS29-207ENST00000549970 CHIC2Q9UKJ5 165 aa25.36■■□□□ 1.65
VPS29-207ENST00000549970 CEP152O94986 1710 aa25.35■■□□□ 1.65
VPS29-207ENST00000549970 ERBINQ96RT1 1412 aa25.35■■□□□ 1.65
VPS29-207ENST00000549970 FAM50AQ14320 339 aaKnown RBP25.33■■□□□ 1.65
VPS29-207ENST00000549970 ANKRD30AQ9BXX3 1397 aa25.31■■□□□ 1.64
VPS29-207ENST00000549970 LTBP4Q8N2S1 1624 aa25.31■■□□□ 1.64
VPS29-207ENST00000549970 NLRP1Q9C000 1473 aa25.3■■□□□ 1.64
VPS29-207ENST00000549970 PRDM15P57071 1507 aaPredicted RBP25.3■■□□□ 1.64
VPS29-207ENST00000549970 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.29■■□□□ 1.64
VPS29-207ENST00000549970 SPATA31D1Q6ZQQ2 1576 aa25.29■■□□□ 1.64
VPS29-207ENST00000549970 ERVK-7P63135 1459 aa25.28■■□□□ 1.64
VPS29-207ENST00000549970 CFAP65Q6ZU64 1925 aaKnown RBP25.27■■□□□ 1.64
VPS29-207ENST00000549970 UGGT1Q9NYU2 1555 aa25.27■■□□□ 1.64
VPS29-207ENST00000549970 ZNF335Q9H4Z2 1342 aaPredicted RBP25.26■■□□□ 1.63
VPS29-207ENST00000549970 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.25■■□□□ 1.63
VPS29-207ENST00000549970 DEPDC5O75140 1603 aa25.25■■□□□ 1.63
VPS29-207ENST00000549970 POLR1AO95602 1720 aaPredicted RBP25.25■■□□□ 1.63
VPS29-207ENST00000549970 THEMISQ8N1K5 641 aaPredicted RBP25.24■■□□□ 1.63
VPS29-207ENST00000549970 ADGRL2O95490 1459 aa25.23■■□□□ 1.63
VPS29-207ENST00000549970 KANK1Q14678 1352 aa25.22■■□□□ 1.63
VPS29-207ENST00000549970 NEURL4Q96JN8 1562 aa25.22■■□□□ 1.63
VPS29-207ENST00000549970 ANKLE2Q86XL3 938 aa25.2■■□□□ 1.62
VPS29-207ENST00000549970 ARHGAP31Q2M1Z3 1444 aa25.2■■□□□ 1.62
VPS29-207ENST00000549970 PPARGC1BQ86YN6 1023 aaKnown RBP25.18■■□□□ 1.62
VPS29-207ENST00000549970 IQSEC2Q5JU85 1478 aa25.16■■□□□ 1.62
VPS29-207ENST00000549970 VWDEQ8N2E2 1590 aa25.14■■□□□ 1.62
VPS29-207ENST00000549970 ANKRD50Q9ULJ7 1429 aa25.13■■□□□ 1.61
VPS29-207ENST00000549970 LMTK2Q8IWU2 1503 aa25.13■■□□□ 1.61
VPS29-207ENST00000549970 UBR1Q8IWV7 1749 aa25.13■■□□□ 1.61
VPS29-207ENST00000549970 NPHP4O75161 1426 aaPredicted RBP25.12■■□□□ 1.61
VPS29-207ENST00000549970 MED14O60244 1454 aa25.1■■□□□ 1.61
VPS29-207ENST00000549970 IQGAP1P46940 1657 aa25.08■■□□□ 1.61
VPS29-207ENST00000549970 EFCAB6Q5THR3 1501 aa25.07■■□□□ 1.6
VPS29-207ENST00000549970 PIK3C2BO00750 1634 aa25.06■■□□□ 1.6
VPS29-207ENST00000549970 ITGAEP38570 1179 aa25.06■■□□□ 1.6
VPS29-207ENST00000549970 CPS1P31327 1500 aa25.03■■□□□ 1.6
VPS29-207ENST00000549970 UBAP1LF5GYI3 381 aa25.03■■□□□ 1.6
VPS29-207ENST00000549970 STAG3Q9UJ98 1225 aa25.03■■□□□ 1.6
VPS29-207ENST00000549970 ROCK1Q13464 1354 aa25.03■■□□□ 1.6
VPS29-207ENST00000549970 SCAF11Q99590 1463 aaKnown RBP25.02■■□□□ 1.6
VPS29-207ENST00000549970 SYNMO15061 1565 aa25.02■■□□□ 1.6
VPS29-207ENST00000549970 ARHGAP23Q9P227 1491 aa25.02■■□□□ 1.6
VPS29-207ENST00000549970 SLIT1O75093 1534 aa25.02■■□□□ 1.6
VPS29-207ENST00000549970 IDI1Q13907 227 aa25.01■■□□□ 1.59
VPS29-207ENST00000549970 NOS1P29475 1434 aa25.01■■□□□ 1.59
VPS29-207ENST00000549970 LTKP29376 864 aa25■■□□□ 1.59
VPS29-207ENST00000549970 TXNDC2Q86VQ3 553 aa25■■□□□ 1.59
VPS29-207ENST00000549970 UNC13BO14795 1591 aa24.99■■□□□ 1.59
VPS29-207ENST00000549970 TET3O43151 1660 aa24.98■■□□□ 1.59
VPS29-207ENST00000549970 EID1Q9Y6B2 187 aa24.97■■□□□ 1.59
VPS29-207ENST00000549970 RPRD2Q5VT52 1461 aaKnown RBP24.96■■□□□ 1.59
VPS29-207ENST00000549970 TMEM2Q9UHN6 1383 aa24.96■■□□□ 1.59
VPS29-207ENST00000549970 KDM5AP29375 1690 aaKnown RBP24.95■■□□□ 1.58
VPS29-207ENST00000549970 GCC2Q8IWJ2 1684 aa24.94■■□□□ 1.58
VPS29-207ENST00000549970 ADGRB3O60242 1522 aa24.93■■□□□ 1.58
VPS29-207ENST00000549970 SLC52A1Q9NWF4 448 aa24.93■■□□□ 1.58
VPS29-207ENST00000549970 STRCP1A6NGW2 1772 aa24.93■■□□□ 1.58
VPS29-207ENST00000549970 IQGAP3Q86VI3 1631 aa24.9■■□□□ 1.58
VPS29-207ENST00000549970 RRBP1Q9P2E9 1410 aaKnown RBP24.89■■□□□ 1.58
VPS29-207ENST00000549970 NUP155O75694 1391 aa24.88■■□□□ 1.57
VPS29-207ENST00000549970 E9PCH4 1651 aa24.88■■□□□ 1.57
VPS29-207ENST00000549970 SCAF1Q9H7N4 1312 aaKnown RBP24.87■■□□□ 1.57
VPS29-207ENST00000549970 TOM1O60784 492 aa24.86■■□□□ 1.57
VPS29-207ENST00000549970 PIP4K2BP78356 416 aa24.86■■□□□ 1.57
VPS29-207ENST00000549970 LRRC7Q96NW7 1537 aa24.86■■□□□ 1.57
VPS29-207ENST00000549970 MYO5BQ9ULV0 1848 aa24.84■■□□□ 1.57
VPS29-207ENST00000549970 TMEM131LA2VDJ0 1609 aa24.8■■□□□ 1.56
VPS29-207ENST00000549970 CHGAP10645 457 aaKnown RBP24.8■■□□□ 1.56
VPS29-207ENST00000549970 DISP3Q9P2K9 1392 aa24.8■■□□□ 1.56
VPS29-207ENST00000549970 SLC26A8Q96RN1 970 aa24.79■■□□□ 1.56
VPS29-207ENST00000549970 SENP3Q9H4L4 574 aaPredicted RBP24.79■■□□□ 1.56
VPS29-207ENST00000549970 BCANQ96GW7 911 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms