RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
PRPF40B-210ENST00000549547 KDM5DQ9BY66 1539 aa19.87■□□□□ 0.77
PRPF40B-210ENST00000549547 PREX1Q8TCU6 1659 aa19.87■□□□□ 0.77
PRPF40B-210ENST00000549547 SETD1BQ9UPS6 1966 aaKnown RBP19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 NCOA1Q15788 1441 aa19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 RRBP1Q9P2E9 1410 aaKnown RBP19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 RRP7BPQ9NSQ0 103 aa19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 CHIC2Q9UKJ5 165 aa19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 ZC3H13Q5T200 1668 aaKnown RBP19.86■□□□□ 0.77
PRPF40B-210ENST00000549547 ZMYM3Q14202 1370 aa19.83■□□□□ 0.77
PRPF40B-210ENST00000549547 CEBPAP49715 358 aaPredicted RBP19.83■□□□□ 0.77
PRPF40B-210ENST00000549547 NPATQ14207 1427 aa19.82■□□□□ 0.76
PRPF40B-210ENST00000549547 ROCK1Q13464 1354 aa19.82■□□□□ 0.76
PRPF40B-210ENST00000549547 WASHC2CQ9Y4E1 1318 aa19.81■□□□□ 0.76
PRPF40B-210ENST00000549547 DEPDC5O75140 1603 aa19.81■□□□□ 0.76
PRPF40B-210ENST00000549547 MROH1Q8NDA8 1641 aa19.8■□□□□ 0.76
PRPF40B-210ENST00000549547 LMTK3Q96Q04 1460 aa19.8■□□□□ 0.76
PRPF40B-210ENST00000549547 PRDM15P57071 1507 aaPredicted RBP19.8■□□□□ 0.76
PRPF40B-210ENST00000549547 PTPRKQ15262 1439 aa19.78■□□□□ 0.76
PRPF40B-210ENST00000549547 UHRF1BP1Q6BDS2 1440 aa19.78■□□□□ 0.76
PRPF40B-210ENST00000549547 ABCC3O15438 1527 aa19.77■□□□□ 0.76
PRPF40B-210ENST00000549547 ANKRD50Q9ULJ7 1429 aa19.76■□□□□ 0.75
PRPF40B-210ENST00000549547 CEP152O94986 1710 aa19.76■□□□□ 0.75
PRPF40B-210ENST00000549547 KANK1Q14678 1352 aa19.76■□□□□ 0.75
PRPF40B-210ENST00000549547 ITGAEP38570 1179 aa19.76■□□□□ 0.75
PRPF40B-210ENST00000549547 PZPP20742 1482 aa19.75■□□□□ 0.75
PRPF40B-210ENST00000549547 CAMSAP1Q5T5Y3 1602 aa19.74■□□□□ 0.75
PRPF40B-210ENST00000549547 MYO3AQ8NEV4 1616 aa19.72■□□□□ 0.75
PRPF40B-210ENST00000549547 ZNF142P52746 1687 aaPredicted RBP19.7■□□□□ 0.74
PRPF40B-210ENST00000549547 VWDEQ8N2E2 1590 aa19.7■□□□□ 0.74
PRPF40B-210ENST00000549547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.74
PRPF40B-210ENST00000549547 LMTK2Q8IWU2 1503 aa19.69■□□□□ 0.74
PRPF40B-210ENST00000549547 UNC13BO14795 1591 aa19.69■□□□□ 0.74
PRPF40B-210ENST00000549547 GCC2Q8IWJ2 1684 aa19.67■□□□□ 0.74
PRPF40B-210ENST00000549547 TNRQ92752 1358 aa19.67■□□□□ 0.74
PRPF40B-210ENST00000549547 ARHGAP31Q2M1Z3 1444 aa19.67■□□□□ 0.74
PRPF40B-210ENST00000549547 SPATA31D1Q6ZQQ2 1576 aa19.66■□□□□ 0.74
PRPF40B-210ENST00000549547 CEP170BQ9Y4F5 1589 aaPredicted RBP19.66■□□□□ 0.74
PRPF40B-210ENST00000549547 HSPA2P54652 639 aa19.65■□□□□ 0.74
PRPF40B-210ENST00000549547 EFCAB6Q5THR3 1501 aa19.63■□□□□ 0.73
PRPF40B-210ENST00000549547 ERVK-7P63135 1459 aa19.63■□□□□ 0.73
PRPF40B-210ENST00000549547 FBXO31Q5XUX0 539 aaPredicted RBP19.63■□□□□ 0.73
PRPF40B-210ENST00000549547 TET3O43151 1660 aa19.62■□□□□ 0.73
PRPF40B-210ENST00000549547 A2ML1A8K2U0 1454 aa19.62■□□□□ 0.73
PRPF40B-210ENST00000549547 NLRP1Q9C000 1473 aa19.62■□□□□ 0.73
PRPF40B-210ENST00000549547 CFAP65Q6ZU64 1925 aaKnown RBP19.62■□□□□ 0.73
PRPF40B-210ENST00000549547 IQGAP3Q86VI3 1631 aa19.61■□□□□ 0.73
PRPF40B-210ENST00000549547 HFM1A2PYH4 1435 aa19.59■□□□□ 0.73
PRPF40B-210ENST00000549547 NAIPQ13075 1403 aa19.59■□□□□ 0.73
PRPF40B-210ENST00000549547 RPRD2Q5VT52 1461 aaKnown RBP19.59■□□□□ 0.73
PRPF40B-210ENST00000549547 STRCQ7RTU9 1775 aa19.57■□□□□ 0.72
PRPF40B-210ENST00000549547 PLA2R1Q13018 1463 aa19.56■□□□□ 0.72
PRPF40B-210ENST00000549547 NUP155O75694 1391 aa19.56■□□□□ 0.72
PRPF40B-210ENST00000549547 DMRT2Q9Y5R5 561 aa19.55■□□□□ 0.72
PRPF40B-210ENST00000549547 UGGT1Q9NYU2 1555 aa19.54■□□□□ 0.72
PRPF40B-210ENST00000549547 THEMISQ8N1K5 641 aaPredicted RBP19.51■□□□□ 0.71
PRPF40B-210ENST00000549547 E9PCH4 1651 aa19.51■□□□□ 0.71
PRPF40B-210ENST00000549547 NOS1P29475 1434 aa19.51■□□□□ 0.71
PRPF40B-210ENST00000549547 KDM5AP29375 1690 aaKnown RBP19.5■□□□□ 0.71
PRPF40B-210ENST00000549547 POLR1AO95602 1720 aaPredicted RBP19.5■□□□□ 0.71
PRPF40B-210ENST00000549547 UBR1Q8IWV7 1749 aa19.5■□□□□ 0.71
PRPF40B-210ENST00000549547 SYNMO15061 1565 aa19.49■□□□□ 0.71
PRPF40B-210ENST00000549547 PKD2Q13563 968 aa19.49■□□□□ 0.71
PRPF40B-210ENST00000549547 PTPRTO14522 1441 aa19.49■□□□□ 0.71
PRPF40B-210ENST00000549547 ACIN1Q9UKV3 1341 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-210ENST00000549547 PIK3C2BO00750 1634 aa19.47■□□□□ 0.71
PRPF40B-210ENST00000549547 SLC52A1Q9NWF4 448 aa19.46■□□□□ 0.71
PRPF40B-210ENST00000549547 SPHKAPQ2M3C7 1700 aa19.43■□□□□ 0.7
PRPF40B-210ENST00000549547 TRIM52Q96A61 297 aa19.43■□□□□ 0.7
PRPF40B-210ENST00000549547 ADGRB3O60242 1522 aa19.42■□□□□ 0.7
PRPF40B-210ENST00000549547 ANKLE2Q86XL3 938 aa19.42■□□□□ 0.7
PRPF40B-210ENST00000549547 STAG3Q9UJ98 1225 aa19.42■□□□□ 0.7
PRPF40B-210ENST00000549547 NCKAP5LQ9HCH0 1330 aa19.42■□□□□ 0.7
PRPF40B-210ENST00000549547 SETD5Q9C0A6 1442 aa19.41■□□□□ 0.7
PRPF40B-210ENST00000549547 IDI1Q13907 227 aa19.4■□□□□ 0.7
PRPF40B-210ENST00000549547 SLIT1O75093 1534 aa19.4■□□□□ 0.7
PRPF40B-210ENST00000549547 NEURL4Q96JN8 1562 aa19.4■□□□□ 0.7
PRPF40B-210ENST00000549547 ARHGAP23Q9P227 1491 aa19.38■□□□□ 0.69
PRPF40B-210ENST00000549547 MED14O60244 1454 aa19.37■□□□□ 0.69
PRPF40B-210ENST00000549547 IQGAP1P46940 1657 aa19.36■□□□□ 0.69
PRPF40B-210ENST00000549547 SLC4A1APQ9BWU0 796 aaKnown RBP19.36■□□□□ 0.69
PRPF40B-210ENST00000549547 SCAF11Q99590 1463 aaKnown RBP19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 TMEM2Q9UHN6 1383 aa19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 MYO5BQ9ULV0 1848 aa19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 EID1Q9Y6B2 187 aa19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 TMEM131LA2VDJ0 1609 aa19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 TRPM2O94759 1503 aa19.35■□□□□ 0.69
PRPF40B-210ENST00000549547 NPHP4O75161 1426 aaPredicted RBP19.34■□□□□ 0.69
PRPF40B-210ENST00000549547 RAB3GAP2Q9H2M9 1393 aa19.32■□□□□ 0.68
PRPF40B-210ENST00000549547 TXNDC2Q86VQ3 553 aa19.31■□□□□ 0.68
PRPF40B-210ENST00000549547 HDGFP51858 240 aaKnown RBP19.3■□□□□ 0.68
PRPF40B-210ENST00000549547 KIF1BO60333 1816 aa19.3■□□□□ 0.68
PRPF40B-210ENST00000549547 CHGAP10645 457 aaKnown RBP19.29■□□□□ 0.68
PRPF40B-210ENST00000549547 MPHOSPH9Q99550 1183 aa19.28■□□□□ 0.68
PRPF40B-210ENST00000549547 CLTCL1P53675 1640 aa19.28■□□□□ 0.68
PRPF40B-210ENST00000549547 HRCP23327 699 aa19.27■□□□□ 0.68
PRPF40B-210ENST00000549547 LTBP4Q8N2S1 1624 aa19.26■□□□□ 0.67
PRPF40B-210ENST00000549547 LTKP29376 864 aa19.26■□□□□ 0.67
PRPF40B-210ENST00000549547 ZFYVE9O95405 1425 aa19.25■□□□□ 0.67
PRPF40B-210ENST00000549547 RIMS2Q9UQ26 1411 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms