RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 TCOF1Q13428 1488 aaKnown RBP29.03■■■□□ 2.24
CHMP1A-207ENST00000549328 ABCC5O15440 1437 aa29.03■■■□□ 2.24
CHMP1A-207ENST00000549328 SHANK2Q9UPX8 1470 aa29.02■■■□□ 2.24
CHMP1A-207ENST00000549328 EIF2AK4Q9P2K8 1649 aaKnown RBP28.99■■■□□ 2.23
CHMP1A-207ENST00000549328 PTPRTO14522 1441 aa28.99■■■□□ 2.23
CHMP1A-207ENST00000549328 NCOA1Q15788 1441 aa28.99■■■□□ 2.23
CHMP1A-207ENST00000549328 DUOX2Q9NRD8 1548 aa28.99■■■□□ 2.23
CHMP1A-207ENST00000549328 MYO3AQ8NEV4 1616 aa28.98■■■□□ 2.23
CHMP1A-207ENST00000549328 RNF17Q9BXT8 1623 aaKnown RBP28.98■■■□□ 2.23
CHMP1A-207ENST00000549328 PZPP20742 1482 aa28.97■■■□□ 2.23
CHMP1A-207ENST00000549328 DAPK1P53355 1430 aa28.97■■■□□ 2.23
CHMP1A-207ENST00000549328 ZNF142P52746 1687 aaPredicted RBP28.96■■■□□ 2.23
CHMP1A-207ENST00000549328 CROCC2H7BZ55 1655 aa28.96■■■□□ 2.23
CHMP1A-207ENST00000549328 DNMT1P26358 1616 aaKnown RBP28.95■■■□□ 2.23
CHMP1A-207ENST00000549328 CAMSAP1Q5T5Y3 1602 aa28.95■■■□□ 2.23
CHMP1A-207ENST00000549328 KIF15Q9NS87 1388 aa28.95■■■□□ 2.22
CHMP1A-207ENST00000549328 CEP170BQ9Y4F5 1589 aaPredicted RBP28.95■■■□□ 2.22
CHMP1A-207ENST00000549328 FBXO31Q5XUX0 539 aaPredicted RBP28.94■■■□□ 2.22
CHMP1A-207ENST00000549328 CERKQ8TCT0 537 aa28.93■■■□□ 2.22
CHMP1A-207ENST00000549328 TNRQ92752 1358 aa28.92■■■□□ 2.22
CHMP1A-207ENST00000549328 RRP7BPQ9NSQ0 103 aa28.92■■■□□ 2.22
CHMP1A-207ENST00000549328 A2ML1A8K2U0 1454 aa28.91■■■□□ 2.22
CHMP1A-207ENST00000549328 PLA2R1Q13018 1463 aa28.91■■■□□ 2.22
CHMP1A-207ENST00000549328 ERBINQ96RT1 1412 aa28.9■■■□□ 2.22
CHMP1A-207ENST00000549328 ZC3H13Q5T200 1668 aaKnown RBP28.89■■■□□ 2.21
CHMP1A-207ENST00000549328 ABCC3O15438 1527 aa28.89■■■□□ 2.21
CHMP1A-207ENST00000549328 PKD2Q13563 968 aa28.88■■■□□ 2.21
CHMP1A-207ENST00000549328 ANKRD30AQ9BXX3 1397 aa28.88■■■□□ 2.21
CHMP1A-207ENST00000549328 MROH1Q8NDA8 1641 aa28.87■■■□□ 2.21
CHMP1A-207ENST00000549328 NCKAP5LQ9HCH0 1330 aa28.85■■■□□ 2.21
CHMP1A-207ENST00000549328 CHIC2Q9UKJ5 165 aa28.84■■■□□ 2.21
CHMP1A-207ENST00000549328 FAM50AQ14320 339 aaKnown RBP28.83■■■□□ 2.21
CHMP1A-207ENST00000549328 NLRP1Q9C000 1473 aa28.82■■■□□ 2.2
CHMP1A-207ENST00000549328 PRDM15P57071 1507 aaPredicted RBP28.79■■■□□ 2.2
CHMP1A-207ENST00000549328 ADGRL2O95490 1459 aa28.78■■■□□ 2.2
CHMP1A-207ENST00000549328 SPATA31D1Q6ZQQ2 1576 aa28.77■■■□□ 2.2
CHMP1A-207ENST00000549328 THEMISQ8N1K5 641 aaPredicted RBP28.77■■■□□ 2.2
CHMP1A-207ENST00000549328 CEP152O94986 1710 aa28.75■■■□□ 2.19
CHMP1A-207ENST00000549328 DEPDC5O75140 1603 aa28.75■■■□□ 2.19
CHMP1A-207ENST00000549328 ARHGAP31Q2M1Z3 1444 aa28.75■■■□□ 2.19
CHMP1A-207ENST00000549328 KANK1Q14678 1352 aa28.75■■■□□ 2.19
CHMP1A-207ENST00000549328 ERVK-7P63135 1459 aa28.74■■■□□ 2.19
CHMP1A-207ENST00000549328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.73■■■□□ 2.192e-6■■□□□ 11.4
CHMP1A-207ENST00000549328 LTBP4Q8N2S1 1624 aa28.72■■■□□ 2.19
CHMP1A-207ENST00000549328 UGGT1Q9NYU2 1555 aa28.72■■■□□ 2.19
CHMP1A-207ENST00000549328 ANKLE2Q86XL3 938 aa28.69■■■□□ 2.18
CHMP1A-207ENST00000549328 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.69■■■□□ 2.183e-6■■■■□ 26.4
CHMP1A-207ENST00000549328 LMTK2Q8IWU2 1503 aa28.66■■■□□ 2.18
CHMP1A-207ENST00000549328 ANKRD50Q9ULJ7 1429 aa28.66■■■□□ 2.18
CHMP1A-207ENST00000549328 VWDEQ8N2E2 1590 aa28.66■■■□□ 2.18
CHMP1A-207ENST00000549328 CFAP65Q6ZU64 1925 aaKnown RBP28.65■■■□□ 2.18
CHMP1A-207ENST00000549328 ZNF335Q9H4Z2 1342 aaPredicted RBP28.65■■■□□ 2.18
CHMP1A-207ENST00000549328 POLR1AO95602 1720 aaPredicted RBP28.64■■■□□ 2.18
CHMP1A-207ENST00000549328 IQSEC2Q5JU85 1478 aa28.64■■■□□ 2.17
CHMP1A-207ENST00000549328 NEURL4Q96JN8 1562 aa28.62■■■□□ 2.17
CHMP1A-207ENST00000549328 PPARGC1BQ86YN6 1023 aaKnown RBP28.61■■■□□ 2.17
CHMP1A-207ENST00000549328 ROCK1Q13464 1354 aa28.61■■■□□ 2.17
CHMP1A-207ENST00000549328 MED14O60244 1454 aa28.59■■■□□ 2.17
CHMP1A-207ENST00000549328 NPHP4O75161 1426 aaPredicted RBP28.55■■■□□ 2.16
CHMP1A-207ENST00000549328 UBR1Q8IWV7 1749 aa28.55■■■□□ 2.16
CHMP1A-207ENST00000549328 EFCAB6Q5THR3 1501 aa28.53■■■□□ 2.16
CHMP1A-207ENST00000549328 NOS1P29475 1434 aa28.5■■■□□ 2.15
CHMP1A-207ENST00000549328 RPRD2Q5VT52 1461 aaKnown RBP28.49■■■□□ 2.15
CHMP1A-207ENST00000549328 SLIT1O75093 1534 aa28.48■■■□□ 2.15
CHMP1A-207ENST00000549328 ARHGAP23Q9P227 1491 aa28.48■■■□□ 2.15
CHMP1A-207ENST00000549328 ITGAEP38570 1179 aa28.48■■■□□ 2.15
CHMP1A-207ENST00000549328 IDI1Q13907 227 aa28.48■■■□□ 2.15
CHMP1A-207ENST00000549328 IQGAP1P46940 1657 aa28.46■■■□□ 2.15
CHMP1A-207ENST00000549328 SLC52A1Q9NWF4 448 aa28.46■■■□□ 2.15
CHMP1A-207ENST00000549328 STAG3Q9UJ98 1225 aa28.46■■■□□ 2.15
CHMP1A-207ENST00000549328 PIK3C2BO00750 1634 aa28.46■■■□□ 2.15
CHMP1A-207ENST00000549328 SCAF11Q99590 1463 aaKnown RBP28.46■■■□□ 2.15
CHMP1A-207ENST00000549328 UNC13BO14795 1591 aa28.45■■■□□ 2.15
CHMP1A-207ENST00000549328 CPS1P31327 1500 aa28.45■■■□□ 2.15
CHMP1A-207ENST00000549328 TXNDC2Q86VQ3 553 aa28.45■■■□□ 2.14
CHMP1A-207ENST00000549328 KDM5AP29375 1690 aaKnown RBP28.45■■■□□ 2.14
CHMP1A-207ENST00000549328 RRBP1Q9P2E9 1410 aaKnown RBP28.44■■■□□ 2.14
CHMP1A-207ENST00000549328 LTKP29376 864 aa28.44■■■□□ 2.14
CHMP1A-207ENST00000549328 EID1Q9Y6B2 187 aa28.44■■■□□ 2.14
CHMP1A-207ENST00000549328 SYNMO15061 1565 aa28.44■■■□□ 2.14
CHMP1A-207ENST00000549328 TET3O43151 1660 aa28.44■■■□□ 2.14
CHMP1A-207ENST00000549328 TMEM2Q9UHN6 1383 aa28.42■■■□□ 2.14
CHMP1A-207ENST00000549328 UBAP1LF5GYI3 381 aa28.38■■■□□ 2.13
CHMP1A-207ENST00000549328 GCC2Q8IWJ2 1684 aa28.38■■■□□ 2.13
CHMP1A-207ENST00000549328 NUP155O75694 1391 aa28.36■■■□□ 2.13
CHMP1A-207ENST00000549328 IQGAP3Q86VI3 1631 aa28.35■■■□□ 2.13
CHMP1A-207ENST00000549328 ADGRB3O60242 1522 aa28.33■■■□□ 2.13
CHMP1A-207ENST00000549328 E9PCH4 1651 aa28.29■■■□□ 2.12
CHMP1A-207ENST00000549328 TOM1O60784 492 aa28.28■■■□□ 2.12
CHMP1A-207ENST00000549328 STRCP1A6NGW2 1772 aa28.26■■■□□ 2.11
CHMP1A-207ENST00000549328 HDGFP51858 240 aaKnown RBP28.25■■■□□ 2.11
CHMP1A-207ENST00000549328 LRRC7Q96NW7 1537 aa28.24■■■□□ 2.11
CHMP1A-207ENST00000549328 NAIPQ13075 1403 aa28.23■■■□□ 2.11
CHMP1A-207ENST00000549328 TMEM131LA2VDJ0 1609 aa28.22■■■□□ 2.11
CHMP1A-207ENST00000549328 ZFYVE9O95405 1425 aa28.2■■■□□ 2.11
CHMP1A-207ENST00000549328 SLC26A8Q96RN1 970 aa28.18■■■□□ 2.1
CHMP1A-207ENST00000549328 RIMS2Q9UQ26 1411 aa28.18■■■□□ 2.1
CHMP1A-207ENST00000549328 CHGAP10645 457 aaKnown RBP28.17■■■□□ 2.1
CHMP1A-207ENST00000549328 MYO5BQ9ULV0 1848 aa28.17■■■□□ 2.1
CHMP1A-207ENST00000549328 HFM1A2PYH4 1435 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms