RNA–Protein interactions for RNA: ENST00000546997.1

BRF1-208, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 2

Gene BRF1, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-208ENST00000546997 TRIM52Q96A61 297 aa23.89■■□□□ 1.41
BRF1-208ENST00000546997 ERBINQ96RT1 1412 aa23.88■■□□□ 1.41
BRF1-208ENST00000546997 COL17A1Q9UMD9 1497 aaPredicted RBP23.88■■□□□ 1.41
BRF1-208ENST00000546997 ZMYM4Q5VZL5 1548 aa23.86■■□□□ 1.41
BRF1-208ENST00000546997 UNC13BO14795 1591 aa23.84■■□□□ 1.41
BRF1-208ENST00000546997 DIP2CQ9Y2E4 1556 aa23.83■■□□□ 1.41
BRF1-208ENST00000546997 PZPP20742 1482 aa23.83■■□□□ 1.41
BRF1-208ENST00000546997 YEATS2Q9ULM3 1422 aa23.81■■□□□ 1.4
BRF1-208ENST00000546997 KDM5DQ9BY66 1539 aa23.8■■□□□ 1.4
BRF1-208ENST00000546997 EIF2AK4Q9P2K8 1649 aaKnown RBP23.8■■□□□ 1.4
BRF1-208ENST00000546997 MPHOSPH9Q99550 1183 aa23.79■■□□□ 1.4
BRF1-208ENST00000546997 DHX29Q7Z478 1369 aaKnown RBP23.79■■□□□ 1.4
BRF1-208ENST00000546997 A2MP01023 1474 aa23.79■■□□□ 1.4
BRF1-208ENST00000546997 NUP155O75694 1391 aa23.78■■□□□ 1.4
BRF1-208ENST00000546997 MAGI2Q86UL8 1455 aa23.78■■□□□ 1.4
BRF1-208ENST00000546997 DEPDC5O75140 1603 aa23.78■■□□□ 1.4
BRF1-208ENST00000546997 SLC4A1APQ9BWU0 796 aaKnown RBP23.74■■□□□ 1.39
BRF1-208ENST00000546997 FAM135AQ9P2D6 1515 aa23.74■■□□□ 1.39
BRF1-208ENST00000546997 IQGAP3Q86VI3 1631 aa23.74■■□□□ 1.39
BRF1-208ENST00000546997 MROH1Q8NDA8 1641 aa23.73■■□□□ 1.39
BRF1-208ENST00000546997 FOXD1Q16676 465 aa23.72■■□□□ 1.39
BRF1-208ENST00000546997 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.72■■□□□ 1.39
BRF1-208ENST00000546997 BCORL1Q5H9F3 1711 aa23.71■■□□□ 1.39
BRF1-208ENST00000546997 KIF3BO15066 747 aa23.71■■□□□ 1.39
BRF1-208ENST00000546997 RNF17Q9BXT8 1623 aaKnown RBP23.7■■□□□ 1.38
BRF1-208ENST00000546997 ARHGEF40Q8TER5 1519 aa23.69■■□□□ 1.38
BRF1-208ENST00000546997 PRDM15P57071 1507 aaPredicted RBP23.69■■□□□ 1.38
BRF1-208ENST00000546997 RTN4Q9NQC3 1192 aaKnown RBP23.68■■□□□ 1.38
BRF1-208ENST00000546997 SIGLEC1Q9BZZ2 1709 aa23.67■■□□□ 1.38
BRF1-208ENST00000546997 SIN3AQ96ST3 1273 aa23.67■■□□□ 1.38
BRF1-208ENST00000546997 VWDEQ8N2E2 1590 aa23.66■■□□□ 1.38
BRF1-208ENST00000546997 ATP10AO60312 1499 aa23.66■■□□□ 1.38
BRF1-208ENST00000546997 PKD2Q13563 968 aa23.65■■□□□ 1.38
BRF1-208ENST00000546997 REREQ9P2R6 1566 aa23.64■■□□□ 1.37
BRF1-208ENST00000546997 ANKRD30BQ9BXX2 1392 aa23.62■■□□□ 1.37
BRF1-208ENST00000546997 CEP152O94986 1710 aa23.61■■□□□ 1.37
BRF1-208ENST00000546997 TET3O43151 1660 aa23.6■■□□□ 1.37
BRF1-208ENST00000546997 E9PCH4 1651 aa23.59■■□□□ 1.37
BRF1-208ENST00000546997 KANK1Q14678 1352 aa23.57■■□□□ 1.36
BRF1-208ENST00000546997 GGT6Q6P531 493 aa23.56■■□□□ 1.36
BRF1-208ENST00000546997 AGLP35573 1532 aa23.55■■□□□ 1.36
BRF1-208ENST00000546997 MIER1Q8N108 512 aa23.53■■□□□ 1.36
BRF1-208ENST00000546997 ABCC3O15438 1527 aa23.52■■□□□ 1.36
BRF1-208ENST00000546997 EFCAB6Q5THR3 1501 aa23.52■■□□□ 1.36
BRF1-208ENST00000546997 LMTK2Q8IWU2 1503 aa23.52■■□□□ 1.36
BRF1-208ENST00000546997 PLA2R1Q13018 1463 aa23.5■■□□□ 1.35
BRF1-208ENST00000546997 RPRD2Q5VT52 1461 aaKnown RBP23.5■■□□□ 1.35
BRF1-208ENST00000546997 ZC3H13Q5T200 1668 aaKnown RBP23.49■■□□□ 1.35
BRF1-208ENST00000546997 CAMSAP1Q5T5Y3 1602 aa23.49■■□□□ 1.35
BRF1-208ENST00000546997 SPHKAPQ2M3C7 1700 aa23.48■■□□□ 1.35
BRF1-208ENST00000546997 CFAP65Q6ZU64 1925 aaKnown RBP23.48■■□□□ 1.35
BRF1-208ENST00000546997 WASHC2CQ9Y4E1 1318 aa23.46■■□□□ 1.35
BRF1-208ENST00000546997 TONSLQ96HA7 1378 aa23.44■■□□□ 1.34
BRF1-208ENST00000546997 YTHDC1Q96MU7 727 aaKnown RBP23.43■■□□□ 1.34
BRF1-208ENST00000546997 NPATQ14207 1427 aa23.42■■□□□ 1.34
BRF1-208ENST00000546997 TRPM2O94759 1503 aa23.41■■□□□ 1.34
BRF1-208ENST00000546997 CLTCQ00610 1675 aaKnown RBP23.41■■□□□ 1.34
BRF1-208ENST00000546997 PTPRTO14522 1441 aa23.41■■□□□ 1.34
BRF1-208ENST00000546997 MLECQ14165 292 aa23.4■■□□□ 1.34
BRF1-208ENST00000546997 TIMELESSQ9UNS1 1208 aa23.4■■□□□ 1.34
BRF1-208ENST00000546997 CCDC144AA2RUR9 1427 aa23.4■■□□□ 1.34
BRF1-208ENST00000546997 ARID4BQ4LE39 1312 aaPredicted RBP23.38■■□□□ 1.33
BRF1-208ENST00000546997 CLTCL1P53675 1640 aa23.38■■□□□ 1.33
BRF1-208ENST00000546997 UGGT1Q9NYU2 1555 aa23.35■■□□□ 1.33
BRF1-208ENST00000546997 ARHGAP31Q2M1Z3 1444 aa23.34■■□□□ 1.33
BRF1-208ENST00000546997 L3MBTL2Q969R5 705 aa23.34■■□□□ 1.33
BRF1-208ENST00000546997 PPP6R1Q9UPN7 881 aa23.32■■□□□ 1.32
BRF1-208ENST00000546997 PREX1Q8TCU6 1659 aa23.32■■□□□ 1.32
BRF1-208ENST00000546997 PPP1R15AO75807 674 aaPredicted RBP23.31■■□□□ 1.32
BRF1-208ENST00000546997 SYNMO15061 1565 aa23.3■■□□□ 1.32
BRF1-208ENST00000546997 NOS1P29475 1434 aa23.29■■□□□ 1.32
BRF1-208ENST00000546997 AMER1Q5JTC6 1135 aaPredicted RBP23.28■■□□□ 1.32
BRF1-208ENST00000546997 KIF1BO60333 1816 aa23.27■■□□□ 1.32
BRF1-208ENST00000546997 CNTLNQ9NXG0 1405 aa23.27■■□□□ 1.32
BRF1-208ENST00000546997 FER1L4A9Z1Z3 1794 aa23.26■■□□□ 1.31
BRF1-208ENST00000546997 SPATA31E1Q6ZUB1 1445 aa23.25■■□□□ 1.31
BRF1-208ENST00000546997 PIK3C2BO00750 1634 aa23.25■■□□□ 1.31
BRF1-208ENST00000546997 MROH2AA6NES4 1674 aa23.24■■□□□ 1.31
BRF1-208ENST00000546997 ERVK-7P63135 1459 aa23.23■■□□□ 1.31
BRF1-208ENST00000546997 FBXO31Q5XUX0 539 aaPredicted RBP23.23■■□□□ 1.31
BRF1-208ENST00000546997 RGL3Q3MIN7 710 aa23.22■■□□□ 1.31
BRF1-208ENST00000546997 ESF1Q9H501 851 aaKnown RBP23.21■■□□□ 1.31
BRF1-208ENST00000546997 ZMYM3Q14202 1370 aa23.2■■□□□ 1.3
BRF1-208ENST00000546997 SUPT16HQ9Y5B9 1047 aaKnown RBP23.2■■□□□ 1.3
BRF1-208ENST00000546997 SPATA31D1Q6ZQQ2 1576 aa23.2■■□□□ 1.3
BRF1-208ENST00000546997 NEURL4Q96JN8 1562 aa23.18■■□□□ 1.3
BRF1-208ENST00000546997 ADGRB3O60242 1522 aa23.18■■□□□ 1.3
BRF1-208ENST00000546997 NBPF8Q3BBV2 869 aa23.17■■□□□ 1.3
BRF1-208ENST00000546997 DCAF11Q8TEB1 546 aa23.17■■□□□ 1.3
BRF1-208ENST00000546997 MADDQ8WXG6 1647 aa23.17■■□□□ 1.3
BRF1-208ENST00000546997 C3P01024 1663 aa23.16■■□□□ 1.3
BRF1-208ENST00000546997 MYO5BQ9ULV0 1848 aa23.16■■□□□ 1.3
BRF1-208ENST00000546997 ADAMTSL3P82987 1691 aa23.15■■□□□ 1.3
BRF1-208ENST00000546997 KDM2AQ9Y2K7 1162 aa23.14■■□□□ 1.3
BRF1-208ENST00000546997 IFT172Q9UG01 1749 aa23.14■■□□□ 1.29
BRF1-208ENST00000546997 ZNF326Q5BKZ1 582 aaKnown RBP23.13■■□□□ 1.29
BRF1-208ENST00000546997 IDI1Q13907 227 aa23.12■■□□□ 1.29
BRF1-208ENST00000546997 UHRF1BP1Q6BDS2 1440 aa23.12■■□□□ 1.29
BRF1-208ENST00000546997 RIMS1Q86UR5 1692 aaKnown RBP23.12■■□□□ 1.29
BRF1-208ENST00000546997 TMEM131LA2VDJ0 1609 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms