RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 FAM135AQ9P2D6 1515 aa23.85■■□□□ 1.41
PRPF40A-212ENST00000545856 KDM5DQ9BY66 1539 aa23.85■■□□□ 1.41
PRPF40A-212ENST00000545856 PRDM15P57071 1507 aaPredicted RBP23.81■■□□□ 1.4
PRPF40A-212ENST00000545856 IQGAP3Q86VI3 1631 aa23.78■■□□□ 1.4
PRPF40A-212ENST00000545856 ZC3H13Q5T200 1668 aaKnown RBP23.77■■□□□ 1.4
PRPF40A-212ENST00000545856 VWDEQ8N2E2 1590 aa23.75■■□□□ 1.39
PRPF40A-212ENST00000545856 MROH1Q8NDA8 1641 aa23.74■■□□□ 1.39
PRPF40A-212ENST00000545856 PPP6R1Q9UPN7 881 aa23.73■■□□□ 1.39
PRPF40A-212ENST00000545856 KANK1Q14678 1352 aa23.71■■□□□ 1.39
PRPF40A-212ENST00000545856 LMTK2Q8IWU2 1503 aa23.71■■□□□ 1.39
PRPF40A-212ENST00000545856 KIF3BO15066 747 aa23.68■■□□□ 1.38
PRPF40A-212ENST00000545856 TET3O43151 1660 aa23.68■■□□□ 1.38
PRPF40A-212ENST00000545856 SIGLEC1Q9BZZ2 1709 aa23.67■■□□□ 1.38
PRPF40A-212ENST00000545856 NUP155O75694 1391 aa23.66■■□□□ 1.38
PRPF40A-212ENST00000545856 CLSPNQ9HAW4 1339 aa23.65■■□□□ 1.38
PRPF40A-212ENST00000545856 PZPP20742 1482 aa23.65■■□□□ 1.38
PRPF40A-212ENST00000545856 DHX57Q6P158 1386 aaKnown RBP23.62■■□□□ 1.37
PRPF40A-212ENST00000545856 TRIM52Q96A61 297 aa23.62■■□□□ 1.37
PRPF40A-212ENST00000545856 ABCC3O15438 1527 aa23.61■■□□□ 1.37
PRPF40A-212ENST00000545856 EFCAB6Q5THR3 1501 aa23.61■■□□□ 1.37
PRPF40A-212ENST00000545856 RPRD2Q5VT52 1461 aaKnown RBP23.61■■□□□ 1.37
PRPF40A-212ENST00000545856 CEP152O94986 1710 aa23.6■■□□□ 1.37
PRPF40A-212ENST00000545856 MROH2AA6NES4 1674 aa23.6■■□□□ 1.37
PRPF40A-212ENST00000545856 CNTLNQ9NXG0 1405 aa23.59■■□□□ 1.37
PRPF40A-212ENST00000545856 CAMSAP1Q5T5Y3 1602 aa23.58■■□□□ 1.37
PRPF40A-212ENST00000545856 ARHGAP31Q2M1Z3 1444 aa23.57■■□□□ 1.36
PRPF40A-212ENST00000545856 MPHOSPH9Q99550 1183 aa23.56■■□□□ 1.36
PRPF40A-212ENST00000545856 SLC4A1APQ9BWU0 796 aaKnown RBP23.56■■□□□ 1.36
PRPF40A-212ENST00000545856 E9PCH4 1651 aa23.54■■□□□ 1.36
PRPF40A-212ENST00000545856 FER1L4A9Z1Z3 1794 aa23.54■■□□□ 1.36
PRPF40A-212ENST00000545856 GGT6Q6P531 493 aa23.53■■□□□ 1.36
PRPF40A-212ENST00000545856 ARID4BQ4LE39 1312 aaPredicted RBP23.52■■□□□ 1.36
PRPF40A-212ENST00000545856 WASHC2CQ9Y4E1 1318 aa23.52■■□□□ 1.36
PRPF40A-212ENST00000545856 CLTCQ00610 1675 aaKnown RBP23.52■■□□□ 1.36
PRPF40A-212ENST00000545856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.52■■□□□ 1.363e-8■■■■□ 24.9
PRPF40A-212ENST00000545856 ADAMTSL3P82987 1691 aa23.5■■□□□ 1.35
PRPF40A-212ENST00000545856 SPHKAPQ2M3C7 1700 aa23.49■■□□□ 1.35
PRPF40A-212ENST00000545856 CCER1Q8TC90 406 aaPredicted RBP23.47■■□□□ 1.35
PRPF40A-212ENST00000545856 ESF1Q9H501 851 aaKnown RBP23.47■■□□□ 1.35
PRPF40A-212ENST00000545856 PKD2Q13563 968 aa23.46■■□□□ 1.35
PRPF40A-212ENST00000545856 TRPM2O94759 1503 aa23.45■■□□□ 1.34
PRPF40A-212ENST00000545856 PTPRTO14522 1441 aa23.44■■□□□ 1.34
PRPF40A-212ENST00000545856 NPATQ14207 1427 aa23.44■■□□□ 1.34
PRPF40A-212ENST00000545856 ANKRD30BQ9BXX2 1392 aa23.43■■□□□ 1.34
PRPF40A-212ENST00000545856 PREX1Q8TCU6 1659 aa23.43■■□□□ 1.34
PRPF40A-212ENST00000545856 MADDQ8WXG6 1647 aa23.41■■□□□ 1.34
PRPF40A-212ENST00000545856 SPATA31D1Q6ZQQ2 1576 aa23.39■■□□□ 1.33
PRPF40A-212ENST00000545856 NEURL4Q96JN8 1562 aa23.39■■□□□ 1.33
PRPF40A-212ENST00000545856 NOS1P29475 1434 aa23.39■■□□□ 1.33
PRPF40A-212ENST00000545856 C3P01024 1663 aa23.37■■□□□ 1.33
PRPF40A-212ENST00000545856 MLECQ14165 292 aa23.37■■□□□ 1.33
PRPF40A-212ENST00000545856 RIMS1Q86UR5 1692 aaKnown RBP23.36■■□□□ 1.33
PRPF40A-212ENST00000545856 PIK3C2BO00750 1634 aa23.35■■□□□ 1.33
PRPF40A-212ENST00000545856 ZMYM3Q14202 1370 aa23.35■■□□□ 1.33
PRPF40A-212ENST00000545856 ERVK-7P63135 1459 aa23.35■■□□□ 1.33
PRPF40A-212ENST00000545856 CCDC144AA2RUR9 1427 aa23.35■■□□□ 1.33
PRPF40A-212ENST00000545856 TIMELESSQ9UNS1 1208 aa23.34■■□□□ 1.33
PRPF40A-212ENST00000545856 PLA2R1Q13018 1463 aa23.33■■□□□ 1.33
PRPF40A-212ENST00000545856 CFAP65Q6ZU64 1925 aaKnown RBP23.33■■□□□ 1.33
PRPF40A-212ENST00000545856 KIF1BO60333 1816 aa23.32■■□□□ 1.32
PRPF40A-212ENST00000545856 KDM5AP29375 1690 aaKnown RBP23.32■■□□□ 1.32
PRPF40A-212ENST00000545856 SYNMO15061 1565 aa23.31■■□□□ 1.32
PRPF40A-212ENST00000545856 SETD1BQ9UPS6 1966 aaKnown RBP23.3■■□□□ 1.32
PRPF40A-212ENST00000545856 ZEB1P37275 1124 aaPredicted RBP23.29■■□□□ 1.32
PRPF40A-212ENST00000545856 CLTCL1P53675 1640 aa23.29■■□□□ 1.32
PRPF40A-212ENST00000545856 SLC52A1Q9NWF4 448 aa23.28■■□□□ 1.32
PRPF40A-212ENST00000545856 FOXD1Q16676 465 aa23.26■■□□□ 1.31
PRPF40A-212ENST00000545856 NLRP1Q9C000 1473 aa23.24■■□□□ 1.31
PRPF40A-212ENST00000545856 PTPRMP28827 1452 aa23.22■■□□□ 1.31
PRPF40A-212ENST00000545856 ADGRB3O60242 1522 aa23.21■■□□□ 1.31
PRPF40A-212ENST00000545856 TNRQ92752 1358 aa23.21■■□□□ 1.31
PRPF40A-212ENST00000545856 STAC3Q96MF2 364 aa23.19■■□□□ 1.3
PRPF40A-212ENST00000545856 SPATA31E1Q6ZUB1 1445 aa23.19■■□□□ 1.3
PRPF40A-212ENST00000545856 MYO3AQ8NEV4 1616 aa23.18■■□□□ 1.3
PRPF40A-212ENST00000545856 ZNF142P52746 1687 aaPredicted RBP23.18■■□□□ 1.3
PRPF40A-212ENST00000545856 TONSLQ96HA7 1378 aa23.17■■□□□ 1.3
PRPF40A-212ENST00000545856 TMEM131LA2VDJ0 1609 aa23.17■■□□□ 1.3
PRPF40A-212ENST00000545856 UGGT1Q9NYU2 1555 aa23.16■■□□□ 1.3
PRPF40A-212ENST00000545856 SIN3AQ96ST3 1273 aa23.14■■□□□ 1.3
PRPF40A-212ENST00000545856 IFT172Q9UG01 1749 aa23.14■■□□□ 1.29
PRPF40A-212ENST00000545856 FBXO31Q5XUX0 539 aaPredicted RBP23.14■■□□□ 1.29
PRPF40A-212ENST00000545856 UBR1Q8IWV7 1749 aa23.12■■□□□ 1.29
PRPF40A-212ENST00000545856 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
PRPF40A-212ENST00000545856 A2ML1A8K2U0 1454 aa23.11■■□□□ 1.29
PRPF40A-212ENST00000545856 MYO5BQ9ULV0 1848 aa23.1■■□□□ 1.29
PRPF40A-212ENST00000545856 NEUROD1Q13562 356 aa23.1■■□□□ 1.29
PRPF40A-212ENST00000545856 PPLO60437 1756 aa23.09■■□□□ 1.29
PRPF40A-212ENST00000545856 CEP170BQ9Y4F5 1589 aaPredicted RBP23.09■■□□□ 1.29
PRPF40A-212ENST00000545856 IDI1Q13907 227 aa23.09■■□□□ 1.29
PRPF40A-212ENST00000545856 MYOM2P54296 1465 aa23.08■■□□□ 1.28
PRPF40A-212ENST00000545856 CEBPAP49715 358 aaPredicted RBP23.05■■□□□ 1.28
PRPF40A-212ENST00000545856 ZFYVE9O95405 1425 aa23.05■■□□□ 1.28
PRPF40A-212ENST00000545856 KDM4FA0A1W2PPD8 638 aa23.04■■□□□ 1.28
PRPF40A-212ENST00000545856 UHRF1BP1Q6BDS2 1440 aa23.04■■□□□ 1.28
PRPF40A-212ENST00000545856 NEXMIFQ5QGS0 1516 aa23.03■■□□□ 1.28
PRPF40A-212ENST00000545856 SLIT1O75093 1534 aa23.02■■□□□ 1.28
PRPF40A-212ENST00000545856 L3MBTL2Q969R5 705 aa23.01■■□□□ 1.27
PRPF40A-212ENST00000545856 KIAA1210Q9ULL0 1709 aa23.01■■□□□ 1.27
PRPF40A-212ENST00000545856 STAG3Q9UJ98 1225 aa23.01■■□□□ 1.27
PRPF40A-212ENST00000545856 HDGFP51858 240 aaKnown RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms