RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MROH2AA6NES4 1674 aa13.44□□□□□ -0.26
USP28-215ENST00000545608 KIF3BO15066 747 aa13.44□□□□□ -0.26
USP28-215ENST00000545608 KANK4Q5T7N3 995 aaPredicted RBP13.44□□□□□ -0.26
USP28-215ENST00000545608 NCKAP5LQ9HCH0 1330 aa13.43□□□□□ -0.26
USP28-215ENST00000545608 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
USP28-215ENST00000545608 CCDC141Q6ZP82 1450 aa13.43□□□□□ -0.26
USP28-215ENST00000545608 CLTCQ00610 1675 aaKnown RBP13.43□□□□□ -0.26
USP28-215ENST00000545608 ADGBQ8N7X0 1667 aa13.42□□□□□ -0.26
USP28-215ENST00000545608 CAMSAP1Q5T5Y3 1602 aa13.42□□□□□ -0.26
USP28-215ENST00000545608 LRRC9Q6ZRR7 1453 aa13.42□□□□□ -0.26
USP28-215ENST00000545608 TSPY4P0CV99 314 aa13.41□□□□□ -0.26
USP28-215ENST00000545608 TSPY10P0CW01 314 aa13.41□□□□□ -0.26
USP28-215ENST00000545608 FBXO31Q5XUX0 539 aaPredicted RBP13.41□□□□□ -0.26
USP28-215ENST00000545608 LTBP4Q8N2S1 1624 aa13.39□□□□□ -0.27
USP28-215ENST00000545608 SLC4A2P04920 1241 aa13.38□□□□□ -0.27
USP28-215ENST00000545608 PKD2Q13563 968 aa13.38□□□□□ -0.27
USP28-215ENST00000545608 WASHC2CQ9Y4E1 1318 aa13.38□□□□□ -0.27
USP28-215ENST00000545608 ZNF335Q9H4Z2 1342 aaPredicted RBP13.37□□□□□ -0.27
USP28-215ENST00000545608 ARHGEF5Q12774 1597 aa13.37□□□□□ -0.27
USP28-215ENST00000545608 MYO3AQ8NEV4 1616 aa13.36□□□□□ -0.27
USP28-215ENST00000545608 CEP170BQ9Y4F5 1589 aaPredicted RBP13.36□□□□□ -0.27
USP28-215ENST00000545608 PLA2R1Q13018 1463 aa13.36□□□□□ -0.27
USP28-215ENST00000545608 TNRQ92752 1358 aa13.35□□□□□ -0.27
USP28-215ENST00000545608 MAP3K1Q13233 1512 aa13.35□□□□□ -0.27
USP28-215ENST00000545608 A2ML1A8K2U0 1454 aa13.35□□□□□ -0.27
USP28-215ENST00000545608 TCOF1Q13428 1488 aaKnown RBP13.35□□□□□ -0.27
USP28-215ENST00000545608 MYOM3Q5VTT5 1437 aa13.33□□□□□ -0.28
USP28-215ENST00000545608 MIA2Q96PC5 1412 aa13.33□□□□□ -0.28
USP28-215ENST00000545608 PZPP20742 1482 aa13.33□□□□□ -0.28
USP28-215ENST00000545608 ZNF142P52746 1687 aaPredicted RBP13.33□□□□□ -0.28
USP28-215ENST00000545608 KDM5DQ9BY66 1539 aa13.33□□□□□ -0.28
USP28-215ENST00000545608 DNMT1P26358 1616 aaKnown RBP13.31□□□□□ -0.28
USP28-215ENST00000545608 IQSEC2Q5JU85 1478 aa13.3□□□□□ -0.28
USP28-215ENST00000545608 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
USP28-215ENST00000545608 MAST1Q9Y2H9 1570 aa13.3□□□□□ -0.28
USP28-215ENST00000545608 MYCNP04198 464 aaPredicted RBP13.3□□□□□ -0.28
USP28-215ENST00000545608 APLP2Q06481 763 aa13.3□□□□□ -0.28
USP28-215ENST00000545608 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP28-215ENST00000545608 ANKLE2Q86XL3 938 aa13.28□□□□□ -0.28
USP28-215ENST00000545608 THEMISQ8N1K5 641 aaPredicted RBP13.28□□□□□ -0.28
USP28-215ENST00000545608 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
USP28-215ENST00000545608 ABCC5O15440 1437 aa13.27□□□□□ -0.29
USP28-215ENST00000545608 UBAP1LF5GYI3 381 aa13.26□□□□□ -0.29
USP28-215ENST00000545608 ABCC3O15438 1527 aa13.26□□□□□ -0.29
USP28-215ENST00000545608 RRP7BPQ9NSQ0 103 aa13.26□□□□□ -0.29
USP28-215ENST00000545608 NLRP1Q9C000 1473 aa13.25□□□□□ -0.29
USP28-215ENST00000545608 RNF17Q9BXT8 1623 aaKnown RBP13.24□□□□□ -0.29
USP28-215ENST00000545608 KIF15Q9NS87 1388 aa13.24□□□□□ -0.29
USP28-215ENST00000545608 DISP3Q9P2K9 1392 aa13.24□□□□□ -0.29
USP28-215ENST00000545608 NEURL4Q96JN8 1562 aa13.24□□□□□ -0.29
USP28-215ENST00000545608 UGGT1Q9NYU2 1555 aa13.24□□□□□ -0.29
USP28-215ENST00000545608 DUOX2Q9NRD8 1548 aa13.23□□□□□ -0.29
USP28-215ENST00000545608 MROH1Q8NDA8 1641 aa13.23□□□□□ -0.29
USP28-215ENST00000545608 ERVK-7P63135 1459 aa13.23□□□□□ -0.29
USP28-215ENST00000545608 EIF2AK4Q9P2K8 1649 aaKnown RBP13.22□□□□□ -0.29
USP28-215ENST00000545608 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP28-215ENST00000545608 CHIC2Q9UKJ5 165 aa13.22□□□□□ -0.29
USP28-215ENST00000545608 SPATA31D1Q6ZQQ2 1576 aa13.22□□□□□ -0.29
USP28-215ENST00000545608 NPHP4O75161 1426 aaPredicted RBP13.22□□□□□ -0.29
USP28-215ENST00000545608 DAPK1P53355 1430 aa13.22□□□□□ -0.29
USP28-215ENST00000545608 FGD6Q6ZV73 1430 aa13.22□□□□□ -0.29
USP28-215ENST00000545608 PTPN23Q9H3S7 1636 aa13.21□□□□□ -0.29
USP28-215ENST00000545608 ILDR2Q71H61 639 aa13.21□□□□□ -0.29
USP28-215ENST00000545608 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.3
USP28-215ENST00000545608 MED14O60244 1454 aa13.2□□□□□ -0.3
USP28-215ENST00000545608 ERBINQ96RT1 1412 aa13.2□□□□□ -0.3
USP28-215ENST00000545608 ZC3H13Q5T200 1668 aaKnown RBP13.19□□□□□ -0.3
USP28-215ENST00000545608 ARHGAP31Q2M1Z3 1444 aa13.18□□□□□ -0.3
USP28-215ENST00000545608 POLR1AO95602 1720 aaPredicted RBP13.18□□□□□ -0.3
USP28-215ENST00000545608 LTKP29376 864 aa13.17□□□□□ -0.3
USP28-215ENST00000545608 CPS1P31327 1500 aa13.17□□□□□ -0.3
USP28-215ENST00000545608 ANKRD30AQ9BXX3 1397 aa13.17□□□□□ -0.3
USP28-215ENST00000545608 CEP152O94986 1710 aa13.16□□□□□ -0.3
USP28-215ENST00000545608 VWDEQ8N2E2 1590 aa13.16□□□□□ -0.3
USP28-215ENST00000545608 TOM1O60784 492 aa13.16□□□□□ -0.3
USP28-215ENST00000545608 PIP4K2BP78356 416 aa13.16□□□□□ -0.3
USP28-215ENST00000545608 DEPDC5O75140 1603 aa13.16□□□□□ -0.3
USP28-215ENST00000545608 CROCC2H7BZ55 1655 aa13.15□□□□□ -0.3
USP28-215ENST00000545608 PRDM15P57071 1507 aaPredicted RBP13.15□□□□□ -0.3
USP28-215ENST00000545608 FAM50AQ14320 339 aaKnown RBP13.15□□□□□ -0.3
USP28-215ENST00000545608 TXNDC2Q86VQ3 553 aa13.15□□□□□ -0.3
USP28-215ENST00000545608 KANK1Q14678 1352 aa13.15□□□□□ -0.3
USP28-215ENST00000545608 HSPA1LP34931 641 aa13.14□□□□□ -0.31
USP28-215ENST00000545608 CFAP65Q6ZU64 1925 aaKnown RBP13.13□□□□□ -0.31
USP28-215ENST00000545608 IDI1Q13907 227 aa13.13□□□□□ -0.31
USP28-215ENST00000545608 SCAF11Q99590 1463 aaKnown RBP13.12□□□□□ -0.31
USP28-215ENST00000545608 ARHGAP23Q9P227 1491 aa13.12□□□□□ -0.31
USP28-215ENST00000545608 IQGAP1P46940 1657 aa13.12□□□□□ -0.31
USP28-215ENST00000545608 UBR1Q8IWV7 1749 aa13.11□□□□□ -0.31
USP28-215ENST00000545608 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
USP28-215ENST00000545608 EID1Q9Y6B2 187 aa13.11□□□□□ -0.31
USP28-215ENST00000545608 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
USP28-215ENST00000545608 SLIT1O75093 1534 aa13.1□□□□□ -0.31
USP28-215ENST00000545608 LMTK2Q8IWU2 1503 aa13.1□□□□□ -0.31
USP28-215ENST00000545608 DCAF8L1A6NGE4 600 aa13.1□□□□□ -0.31
USP28-215ENST00000545608 TMEM2Q9UHN6 1383 aa13.09□□□□□ -0.31
USP28-215ENST00000545608 LRRC7Q96NW7 1537 aa13.09□□□□□ -0.31
USP28-215ENST00000545608 SOCS7O14512 581 aa13.09□□□□□ -0.31
USP28-215ENST00000545608 NOS1P29475 1434 aa13.08□□□□□ -0.32
USP28-215ENST00000545608 ALKQ9UM73 1620 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms