RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 MYT1LQ9UL68 1186 aa7.62□□□□□ -1.19
USP28-213ENST00000544967 KDM5AP29375 1690 aaKnown RBP7.62□□□□□ -1.19
USP28-213ENST00000544967 LMTK2Q8IWU2 1503 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 PLCB2Q00722 1185 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 C9orf84Q5VXU9 1444 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 CCNB3Q8WWL7 1395 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 TRAPPC8Q9Y2L5 1435 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 FER1L4A9Z1Z3 1794 aa7.61□□□□□ -1.19
USP28-213ENST00000544967 ZNF142P52746 1687 aaPredicted RBP7.6□□□□□ -1.19
USP28-213ENST00000544967 DUOX2Q9NRD8 1548 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 ROCK1Q13464 1354 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 DAPK1P53355 1430 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 ATP10AO60312 1499 aa7.6□□□□□ -1.19
USP28-213ENST00000544967 IQGAP3Q86VI3 1631 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 SLC4A1APQ9BWU0 796 aaKnown RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 ABCC5O15440 1437 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 ERBINQ96RT1 1412 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 SCAPERQ9BY12 1400 aa7.59□□□□□ -1.19
USP28-213ENST00000544967 KANK4Q5T7N3 995 aaPredicted RBP7.59□□□□□ -1.19
USP28-213ENST00000544967 TSHZ2Q9NRE2 1034 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 SUPT16HQ9Y5B9 1047 aaKnown RBP7.58□□□□□ -1.2
USP28-213ENST00000544967 C14orf37Q86TY3 774 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 RSPH4AQ5TD94 716 aa7.58□□□□□ -1.2
USP28-213ENST00000544967 EFCAB2Q5VUJ9 269 aa7.57□□□□□ -1.2
USP28-213ENST00000544967 C3P01024 1663 aa7.56□□□□□ -1.2
USP28-213ENST00000544967 CAMSAP1Q5T5Y3 1602 aa7.56□□□□□ -1.2
USP28-213ENST00000544967 TET3O43151 1660 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 YEATS2Q9ULM3 1422 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 NEURL4Q96JN8 1562 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 MADDQ8WXG6 1647 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 PIK3C2BO00750 1634 aa7.55□□□□□ -1.2
USP28-213ENST00000544967 A2MP01023 1474 aa7.54□□□□□ -1.2
USP28-213ENST00000544967 MIER1Q8N108 512 aa7.54□□□□□ -1.2
USP28-213ENST00000544967 PTPRKQ15262 1439 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 PREX1Q8TCU6 1659 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 NCOA1Q15788 1441 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 HAP1P54257 671 aaPredicted RBP7.53□□□□□ -1.2
USP28-213ENST00000544967 CEP152O94986 1710 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 CLTCQ00610 1675 aaKnown RBP7.53□□□□□ -1.2
USP28-213ENST00000544967 SPATA31D1Q6ZQQ2 1576 aa7.53□□□□□ -1.2
USP28-213ENST00000544967 TMEM132AQ24JP5 1023 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 ABCC3O15438 1527 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 EFCAB6Q5THR3 1501 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 ARHGAP31Q2M1Z3 1444 aa7.52□□□□□ -1.21
USP28-213ENST00000544967 RIMS1Q86UR5 1692 aaKnown RBP7.52□□□□□ -1.21
USP28-213ENST00000544967 HFM1A2PYH4 1435 aa7.51□□□□□ -1.21
USP28-213ENST00000544967 DHX29Q7Z478 1369 aaKnown RBP7.51□□□□□ -1.21
USP28-213ENST00000544967 CNTLNQ9NXG0 1405 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 MYO3AQ8NEV4 1616 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 RPRD2Q5VT52 1461 aaKnown RBP7.5□□□□□ -1.21
USP28-213ENST00000544967 E9PCH4 1651 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 KCNH8Q96L42 1107 aa7.5□□□□□ -1.21
USP28-213ENST00000544967 NPATQ14207 1427 aa7.49□□□□□ -1.21
USP28-213ENST00000544967 CFDP1Q9UEE9 299 aaPredicted RBP7.49□□□□□ -1.21
USP28-213ENST00000544967 PPP6R1Q9UPN7 881 aa7.49□□□□□ -1.21
USP28-213ENST00000544967 SPHKAPQ2M3C7 1700 aa7.48□□□□□ -1.21
USP28-213ENST00000544967 TRHP20396 242 aaPredicted RBP7.48□□□□□ -1.21
USP28-213ENST00000544967 PZPP20742 1482 aa7.48□□□□□ -1.21
USP28-213ENST00000544967 NAIPQ13075 1403 aa7.47□□□□□ -1.21
USP28-213ENST00000544967 IFT172Q9UG01 1749 aa7.47□□□□□ -1.21
USP28-213ENST00000544967 ZNF644Q9H582 1327 aaPredicted RBP7.47□□□□□ -1.21
USP28-213ENST00000544967 FANCIQ9NVI1 1328 aa7.46□□□□□ -1.21
USP28-213ENST00000544967 ARID3CA6NKF2 412 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 SYNMO15061 1565 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 UBR1Q8IWV7 1749 aa7.46□□□□□ -1.22
USP28-213ENST00000544967 ANKRD30AQ9BXX3 1397 aa7.45□□□□□ -1.22
USP28-213ENST00000544967 PTPRMP28827 1452 aa7.45□□□□□ -1.22
USP28-213ENST00000544967 POLR1AO95602 1720 aaPredicted RBP7.45□□□□□ -1.22
USP28-213ENST00000544967 HNRNPUL2Q1KMD3 747 aaKnown RBP7.45□□□□□ -1.22
USP28-213ENST00000544967 YTHDC1Q96MU7 727 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 SPAG9O60271 1321 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 RAPGEF3O95398 923 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
USP28-213ENST00000544967 ERICH6BQ5W0A0 696 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 FBXO3Q9UK99 471 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 KIF15Q9NS87 1388 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 TRPM2O94759 1503 aa7.44□□□□□ -1.22
USP28-213ENST00000544967 NOS1P29475 1434 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 UGGT1Q9NYU2 1555 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 PTPRTO14522 1441 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 AFAP1Q8N556 730 aa7.43□□□□□ -1.22
USP28-213ENST00000544967 ANKRD50Q9ULJ7 1429 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 SETD1BQ9UPS6 1966 aaKnown RBP7.42□□□□□ -1.22
USP28-213ENST00000544967 TMEM131LA2VDJ0 1609 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 HNRNPMP52272 730 aaKnown RBP eCLIP7.42□□□□□ -1.22
USP28-213ENST00000544967 ERVK-7P63135 1459 aa7.42□□□□□ -1.22
USP28-213ENST00000544967 STRCQ7RTU9 1775 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 CEP170BQ9Y4F5 1589 aaPredicted RBP7.41□□□□□ -1.22
USP28-213ENST00000544967 SLIT1O75093 1534 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 SETD1AO15047 1707 aaKnown RBP7.41□□□□□ -1.22
USP28-213ENST00000544967 NLRP1Q9C000 1473 aa7.41□□□□□ -1.22
USP28-213ENST00000544967 PLA2R1Q13018 1463 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 LMTK3Q96Q04 1460 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 ADGRB3O60242 1522 aa7.4□□□□□ -1.22
USP28-213ENST00000544967 ATP1B4Q9UN42 357 aaPredicted RBP7.4□□□□□ -1.23
USP28-213ENST00000544967 ARHGAP23Q9P227 1491 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 KDM4FA0A1W2PPD8 638 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 MYO5BQ9ULV0 1848 aa7.39□□□□□ -1.23
USP28-213ENST00000544967 PPLO60437 1756 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms