RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	AGL	P35573	1532 aa		15.06	■□□□□ 0
CPSF7-221	ENST00000543545	ADGB	Q8N7X0	1667 aa		15.06	■□□□□ 0
CPSF7-221	ENST00000543545	PLPPR3	Q6T4P5	718 aa		15.05	■□□□□ -0
CPSF7-221	ENST00000543545	ACIN1	Q9UKV3	1341 aa	Known RBP	15.05	■□□□□ -0
CPSF7-221	ENST00000543545	RERE	Q9P2R6	1566 aa		15.05	■□□□□ -0
CPSF7-221	ENST00000543545	HRC	P23327	699 aa		15.04	■□□□□ -0
CPSF7-221	ENST00000543545	SLC4A1AP	Q9BWU0	796 aa	Known RBP	15.02	■□□□□ -0
CPSF7-221	ENST00000543545	KDM4F	A0A1W2PPD8	638 aa		14.98	□□□□□ -0.01
CPSF7-221	ENST00000543545	MPHOSPH9	Q99550	1183 aa		14.98	□□□□□ -0.01
CPSF7-221	ENST00000543545	CEBPA	P49715	358 aa	Predicted RBP	14.97	□□□□□ -0.01
CPSF7-221	ENST00000543545	EIF2AK4	Q9P2K8	1649 aa	Known RBP	14.96	□□□□□ -0.01
CPSF7-221	ENST00000543545	PKD2	Q13563	968 aa		14.96	□□□□□ -0.01
CPSF7-221	ENST00000543545	CNTLN	Q9NXG0	1405 aa		14.96	□□□□□ -0.01
CPSF7-221	ENST00000543545	ZMYM3	Q14202	1370 aa		14.96	□□□□□ -0.02
CPSF7-221	ENST00000543545	SIGLEC1	Q9BZZ2	1709 aa		14.95	□□□□□ -0.02
CPSF7-221	ENST00000543545	GCC2	Q8IWJ2	1684 aa		14.95	□□□□□ -0.02
CPSF7-221	ENST00000543545	FOXD1	Q16676	465 aa		14.93	□□□□□ -0.02
CPSF7-221	ENST00000543545	FBXO31	Q5XUX0	539 aa	Predicted RBP	14.93	□□□□□ -0.02
CPSF7-221	ENST00000543545	RNF17	Q9BXT8	1623 aa	Known RBP	14.92	□□□□□ -0.02
CPSF7-221	ENST00000543545	ABCC3	O15438	1527 aa		14.92	□□□□□ -0.02
CPSF7-221	ENST00000543545	KDM5D	Q9BY66	1539 aa		14.92	□□□□□ -0.02
CPSF7-221	ENST00000543545	BCORL1	Q5H9F3	1711 aa		14.91	□□□□□ -0.02
CPSF7-221	ENST00000543545	PRDM15	P57071	1507 aa	Predicted RBP	14.91	□□□□□ -0.02
CPSF7-221	ENST00000543545	FAM135A	Q9P2D6	1515 aa		14.9	□□□□□ -0.02
CPSF7-221	ENST00000543545	MROH1	Q8NDA8	1641 aa		14.89	□□□□□ -0.03
CPSF7-221	ENST00000543545	UNC13B	O14795	1591 aa		14.89	□□□□□ -0.03
CPSF7-221	ENST00000543545	PZP	P20742	1482 aa		14.89	□□□□□ -0.03
CPSF7-221	ENST00000543545	DEPDC5	O75140	1603 aa		14.88	□□□□□ -0.03
CPSF7-221	ENST00000543545	MADD	Q8WXG6	1647 aa		14.88	□□□□□ -0.03
CPSF7-221	ENST00000543545	LMTK2	Q8IWU2	1503 aa		14.87	□□□□□ -0.03
CPSF7-221	ENST00000543545	PTPRM	P28827	1452 aa		14.87	□□□□□ -0.03
CPSF7-221	ENST00000543545	ADAMTSL3	P82987	1691 aa		14.87	□□□□□ -0.03
CPSF7-221	ENST00000543545	VWDE	Q8N2E2	1590 aa		14.86	□□□□□ -0.03
CPSF7-221	ENST00000543545	NPAT	Q14207	1427 aa		14.86	□□□□□ -0.03
CPSF7-221	ENST00000543545	ARHGAP31	Q2M1Z3	1444 aa		14.86	□□□□□ -0.03
CPSF7-221	ENST00000543545	CCER1	Q8TC90	406 aa	Predicted RBP	14.86	□□□□□ -0.03
CPSF7-221	ENST00000543545	AEBP2	Q6ZN18	517 aa	Predicted RBP	14.84	□□□□□ -0.03
CPSF7-221	ENST00000543545	IQGAP3	Q86VI3	1631 aa		14.84	□□□□□ -0.03
CPSF7-221	ENST00000543545	DHX57	Q6P158	1386 aa	Known RBP	14.84	□□□□□ -0.03
CPSF7-221	ENST00000543545	TNR	Q92752	1358 aa		14.84	□□□□□ -0.03
CPSF7-221	ENST00000543545	CLTC	Q00610	1675 aa	Known RBP	14.84	□□□□□ -0.03
CPSF7-221	ENST00000543545	CHGA	P10645	457 aa	Known RBP	14.83	□□□□□ -0.04
CPSF7-221	ENST00000543545	STAG3	Q9UJ98	1225 aa		14.83	□□□□□ -0.04
CPSF7-221	ENST00000543545	RIMS1	Q86UR5	1692 aa	Known RBP	14.82	□□□□□ -0.04
CPSF7-221	ENST00000543545	SLC52A1	Q9NWF4	448 aa		14.82	□□□□□ -0.04
CPSF7-221	ENST00000543545	RPRD2	Q5VT52	1461 aa	Known RBP	14.82	□□□□□ -0.04
CPSF7-221	ENST00000543545	EFCAB6	Q5THR3	1501 aa		14.82	□□□□□ -0.04
CPSF7-221	ENST00000543545	FER1L4	A9Z1Z3	1794 aa		14.81	□□□□□ -0.04
CPSF7-221	ENST00000543545	ZC3H13	Q5T200	1668 aa	Known RBP	14.81	□□□□□ -0.04
CPSF7-221	ENST00000543545	IDI1	Q13907	227 aa		14.8	□□□□□ -0.04
CPSF7-221	ENST00000543545	ERVK-7	P63135	1459 aa		14.8	□□□□□ -0.04
CPSF7-221	ENST00000543545	TET3	O43151	1660 aa		14.8	□□□□□ -0.04
CPSF7-221	ENST00000543545	CEP152	O94986	1710 aa		14.8	□□□□□ -0.04
CPSF7-221	ENST00000543545	NEUROD1	Q13562	356 aa		14.79	□□□□□ -0.04
CPSF7-221	ENST00000543545	CAMSAP1	Q5T5Y3	1602 aa		14.79	□□□□□ -0.04
CPSF7-221	ENST00000543545	NOS1	P29475	1434 aa		14.78	□□□□□ -0.04
CPSF7-221	ENST00000543545	ANKRD30B	Q9BXX2	1392 aa		14.78	□□□□□ -0.04
CPSF7-221	ENST00000543545	PTPRT	O14522	1441 aa		14.77	□□□□□ -0.04
CPSF7-221	ENST00000543545	CCDC144A	A2RUR9	1427 aa		14.76	□□□□□ -0.05
CPSF7-221	ENST00000543545	SIN3A	Q96ST3	1273 aa		14.76	□□□□□ -0.05
CPSF7-221	ENST00000543545	PLA2R1	Q13018	1463 aa		14.76	□□□□□ -0.05
CPSF7-221	ENST00000543545	MROH2A	A6NES4	1674 aa		14.75	□□□□□ -0.05
CPSF7-221	ENST00000543545	ZNF326	Q5BKZ1	582 aa	Known RBP	14.75	□□□□□ -0.05
CPSF7-221	ENST00000543545	RGL3	Q3MIN7	710 aa		14.74	□□□□□ -0.05
CPSF7-221	ENST00000543545	UHRF1BP1	Q6BDS2	1440 aa		14.74	□□□□□ -0.05
CPSF7-221	ENST00000543545	THEMIS	Q8N1K5	641 aa	Predicted RBP	14.73	□□□□□ -0.05
CPSF7-221	ENST00000543545		E9PCH4	1651 aa		14.73	□□□□□ -0.05
CPSF7-221	ENST00000543545	C3	P01024	1663 aa		14.73	□□□□□ -0.05
CPSF7-221	ENST00000543545	SPATA31D1	Q6ZQQ2	1576 aa		14.73	□□□□□ -0.05
CPSF7-221	ENST00000543545	NLRP1	Q9C000	1473 aa		14.71	□□□□□ -0.05
CPSF7-221	ENST00000543545	HSPA2	P54652	639 aa		14.7	□□□□□ -0.06
CPSF7-221	ENST00000543545	CLSPN	Q9HAW4	1339 aa		14.69	□□□□□ -0.06
CPSF7-221	ENST00000543545	UGGT1	Q9NYU2	1555 aa		14.69	□□□□□ -0.06
CPSF7-221	ENST00000543545	HDGF	P51858	240 aa	Known RBP	14.69	□□□□□ -0.06
CPSF7-221	ENST00000543545	TRPM2	O94759	1503 aa		14.69	□□□□□ -0.06
CPSF7-221	ENST00000543545	CFAP65	Q6ZU64	1925 aa	Known RBP	14.68	□□□□□ -0.06
CPSF7-221	ENST00000543545	PREX1	Q8TCU6	1659 aa		14.68	□□□□□ -0.06
CPSF7-221	ENST00000543545	NUTM2D	Q5VT03	806 aa	Predicted RBP	14.68	□□□□□ -0.06
CPSF7-221	ENST00000543545	A2ML1	A8K2U0	1454 aa		14.68	□□□□□ -0.06
CPSF7-221	ENST00000543545	SYNM	O15061	1565 aa		14.68	□□□□□ -0.06
CPSF7-221	ENST00000543545	PPP1R15A	O75807	674 aa	Predicted RBP	14.67	□□□□□ -0.06
CPSF7-221	ENST00000543545	EID1	Q9Y6B2	187 aa		14.67	□□□□□ -0.06
CPSF7-221	ENST00000543545	TXNDC2	Q86VQ3	553 aa		14.66	□□□□□ -0.06
CPSF7-221	ENST00000543545	BCAN	Q96GW7	911 aa		14.66	□□□□□ -0.06
CPSF7-221	ENST00000543545	KDM2A	Q9Y2K7	1162 aa		14.66	□□□□□ -0.06
CPSF7-221	ENST00000543545	ANKLE2	Q86XL3	938 aa		14.65	□□□□□ -0.06
CPSF7-221	ENST00000543545	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	14.65	□□□□□ -0.06
CPSF7-221	ENST00000543545	SENP3	Q9H4L4	574 aa	Predicted RBP	14.65	□□□□□ -0.06
CPSF7-221	ENST00000543545	RPGRIP1L	Q68CZ1	1315 aa		14.65	□□□□□ -0.06
CPSF7-221	ENST00000543545	DCAF11	Q8TEB1	546 aa		14.64	□□□□□ -0.07
CPSF7-221	ENST00000543545	SETD1B	Q9UPS6	1966 aa	Known RBP	14.64	□□□□□ -0.07
CPSF7-221	ENST00000543545	SPHKAP	Q2M3C7	1700 aa		14.63	□□□□□ -0.07
CPSF7-221	ENST00000543545	TONSL	Q96HA7	1378 aa		14.63	□□□□□ -0.07
CPSF7-221	ENST00000543545	TMEM2	Q9UHN6	1383 aa		14.63	□□□□□ -0.07
CPSF7-221	ENST00000543545	VGF	O15240	615 aa	Predicted RBP	14.62	□□□□□ -0.07
CPSF7-221	ENST00000543545	L3MBTL2	Q969R5	705 aa		14.62	□□□□□ -0.07
CPSF7-221	ENST00000543545	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	14.62	□□□□□ -0.07
CPSF7-221	ENST00000543545	CLTCL1	P53675	1640 aa		14.62	□□□□□ -0.07
CPSF7-221	ENST00000543545	NCKAP5L	Q9HCH0	1330 aa		14.62	□□□□□ -0.07
CPSF7-221	ENST00000543545	SPATA31E1	Q6ZUB1	1445 aa		14.61	□□□□□ -0.07

Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms