RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 ADAMTSL3P82987 1691 aa9.46□□□□□ -0.89
LTBR-212ENST00000543542 GCC2Q8IWJ2 1684 aa9.46□□□□□ -0.89
LTBR-212ENST00000543542 KDM4FA0A1W2PPD8 638 aa9.46□□□□□ -0.9
LTBR-212ENST00000543542 KANK1Q14678 1352 aa9.46□□□□□ -0.9
LTBR-212ENST00000543542 CLTCQ00610 1675 aaKnown RBP9.45□□□□□ -0.9
LTBR-212ENST00000543542 WASHC2CQ9Y4E1 1318 aa9.45□□□□□ -0.9
LTBR-212ENST00000543542 TRIM26Q12899 539 aaPredicted RBP9.44□□□□□ -0.9
LTBR-212ENST00000543542 RNF17Q9BXT8 1623 aaKnown RBP9.44□□□□□ -0.9
LTBR-212ENST00000543542 CEP152O94986 1710 aa9.43□□□□□ -0.9
LTBR-212ENST00000543542 CNTLNQ9NXG0 1405 aa9.43□□□□□ -0.9
LTBR-212ENST00000543542 TRIM52Q96A61 297 aa9.43□□□□□ -0.9
LTBR-212ENST00000543542 PPP6R1Q9UPN7 881 aa9.43□□□□□ -0.9
LTBR-212ENST00000543542 ZC3H13Q5T200 1668 aaKnown RBP9.42□□□□□ -0.9
LTBR-212ENST00000543542 KDM5DQ9BY66 1539 aa9.42□□□□□ -0.9
LTBR-212ENST00000543542 HFM1A2PYH4 1435 aa9.42□□□□□ -0.9
LTBR-212ENST00000543542 NAIPQ13075 1403 aa9.42□□□□□ -0.9
LTBR-212ENST00000543542 MROH2AA6NES4 1674 aa9.42□□□□□ -0.9
LTBR-212ENST00000543542 DEPDC5O75140 1603 aa9.42□□□□□ -0.9
LTBR-212ENST00000543542 PTPRMP28827 1452 aa9.41□□□□□ -0.9
LTBR-212ENST00000543542 PRDM15P57071 1507 aaPredicted RBP9.41□□□□□ -0.9
LTBR-212ENST00000543542 SETD5Q9C0A6 1442 aa9.4□□□□□ -0.9
LTBR-212ENST00000543542 C3P01024 1663 aa9.4□□□□□ -0.9
LTBR-212ENST00000543542 CEBPAP49715 358 aaPredicted RBP9.4□□□□□ -0.9
LTBR-212ENST00000543542 MROH1Q8NDA8 1641 aa9.4□□□□□ -0.9
LTBR-212ENST00000543542 UNC13BO14795 1591 aa9.4□□□□□ -0.9
LTBR-212ENST00000543542 FAM135AQ9P2D6 1515 aa9.4□□□□□ -0.91
LTBR-212ENST00000543542 NUP155O75694 1391 aa9.39□□□□□ -0.91
LTBR-212ENST00000543542 ZMYM3Q14202 1370 aa9.39□□□□□ -0.91
LTBR-212ENST00000543542 CAMSAP1Q5T5Y3 1602 aa9.39□□□□□ -0.91
LTBR-212ENST00000543542 ABCC3O15438 1527 aa9.39□□□□□ -0.91
LTBR-212ENST00000543542 CFAP65Q6ZU64 1925 aaKnown RBP9.38□□□□□ -0.91
LTBR-212ENST00000543542 IQGAP3Q86VI3 1631 aa9.37□□□□□ -0.91
LTBR-212ENST00000543542 RAB3GAP2Q9H2M9 1393 aa9.37□□□□□ -0.91
LTBR-212ENST00000543542 ACIN1Q9UKV3 1341 aaKnown RBP9.36□□□□□ -0.91
LTBR-212ENST00000543542 TET3O43151 1660 aa9.36□□□□□ -0.91
LTBR-212ENST00000543542 VWDEQ8N2E2 1590 aa9.35□□□□□ -0.91
LTBR-212ENST00000543542 SLC4A1APQ9BWU0 796 aaKnown RBP9.35□□□□□ -0.91
LTBR-212ENST00000543542 LMTK2Q8IWU2 1503 aa9.35□□□□□ -0.91
LTBR-212ENST00000543542 PZPP20742 1482 aa9.34□□□□□ -0.91
LTBR-212ENST00000543542 FBXO31Q5XUX0 539 aaPredicted RBP9.34□□□□□ -0.91
LTBR-212ENST00000543542 PCGF6Q9BYE7 350 aa9.34□□□□□ -0.91
LTBR-212ENST00000543542 EFCAB6Q5THR3 1501 aa9.34□□□□□ -0.91
LTBR-212ENST00000543542 PREX1Q8TCU6 1659 aa9.33□□□□□ -0.92
LTBR-212ENST00000543542 TNRQ92752 1358 aa9.33□□□□□ -0.92
LTBR-212ENST00000543542 E9PCH4 1651 aa9.32□□□□□ -0.92
LTBR-212ENST00000543542 NPATQ14207 1427 aa9.32□□□□□ -0.92
LTBR-212ENST00000543542 ARHGAP31Q2M1Z3 1444 aa9.32□□□□□ -0.92
LTBR-212ENST00000543542 UHRF1BP1Q6BDS2 1440 aa9.32□□□□□ -0.92
LTBR-212ENST00000543542 MYO3AQ8NEV4 1616 aa9.31□□□□□ -0.92
LTBR-212ENST00000543542 PKD2Q13563 968 aa9.31□□□□□ -0.92
LTBR-212ENST00000543542 MPHOSPH9Q99550 1183 aa9.31□□□□□ -0.92
LTBR-212ENST00000543542 STAG3Q9UJ98 1225 aa9.31□□□□□ -0.92
LTBR-212ENST00000543542 ERVK-7P63135 1459 aa9.31□□□□□ -0.92
LTBR-212ENST00000543542 SETD1BQ9UPS6 1966 aaKnown RBP9.31□□□□□ -0.92
LTBR-212ENST00000543542 SPATA31D1Q6ZQQ2 1576 aa9.3□□□□□ -0.92
LTBR-212ENST00000543542 RPRD2Q5VT52 1461 aaKnown RBP9.3□□□□□ -0.92
LTBR-212ENST00000543542 HRCP23327 699 aa9.3□□□□□ -0.92
LTBR-212ENST00000543542 SPHKAPQ2M3C7 1700 aa9.3□□□□□ -0.92
LTBR-212ENST00000543542 CHGAP10645 457 aaKnown RBP9.29□□□□□ -0.92
LTBR-212ENST00000543542 FOXD1Q16676 465 aa9.28□□□□□ -0.92
LTBR-212ENST00000543542 CEP170BQ9Y4F5 1589 aaPredicted RBP9.28□□□□□ -0.92
LTBR-212ENST00000543542 NLRP1Q9C000 1473 aa9.28□□□□□ -0.92
LTBR-212ENST00000543542 SYNMO15061 1565 aa9.27□□□□□ -0.93
LTBR-212ENST00000543542 A2ML1A8K2U0 1454 aa9.27□□□□□ -0.93
LTBR-212ENST00000543542 ZNF142P52746 1687 aaPredicted RBP9.26□□□□□ -0.93
LTBR-212ENST00000543542 UGGT1Q9NYU2 1555 aa9.26□□□□□ -0.93
LTBR-212ENST00000543542 NOS1P29475 1434 aa9.26□□□□□ -0.93
LTBR-212ENST00000543542 HSPA2P54652 639 aa9.26□□□□□ -0.93
LTBR-212ENST00000543542 SLC52A1Q9NWF4 448 aa9.26□□□□□ -0.93
LTBR-212ENST00000543542 PIK3C2BO00750 1634 aa9.26□□□□□ -0.93
LTBR-212ENST00000543542 IDI1Q13907 227 aa9.25□□□□□ -0.93
LTBR-212ENST00000543542 THEMISQ8N1K5 641 aaPredicted RBP9.25□□□□□ -0.93
LTBR-212ENST00000543542 KIF1BO60333 1816 aa9.25□□□□□ -0.93
LTBR-212ENST00000543542 LMTK3Q96Q04 1460 aa9.25□□□□□ -0.93
LTBR-212ENST00000543542 ZNF326Q5BKZ1 582 aaKnown RBP9.24□□□□□ -0.93
LTBR-212ENST00000543542 UBR1Q8IWV7 1749 aa9.24□□□□□ -0.93
LTBR-212ENST00000543542 TRPM2O94759 1503 aa9.24□□□□□ -0.93
LTBR-212ENST00000543542 MYO5BQ9ULV0 1848 aa9.23□□□□□ -0.93
LTBR-212ENST00000543542 CLTCL1P53675 1640 aa9.23□□□□□ -0.93
LTBR-212ENST00000543542 CCDC144AA2RUR9 1427 aa9.22□□□□□ -0.93
LTBR-212ENST00000543542 PTPRTO14522 1441 aa9.22□□□□□ -0.93
LTBR-212ENST00000543542 ADGRB3O60242 1522 aa9.22□□□□□ -0.93
LTBR-212ENST00000543542 KDM5AP29375 1690 aaKnown RBP9.21□□□□□ -0.93
LTBR-212ENST00000543542 PPP1R15AO75807 674 aaPredicted RBP9.21□□□□□ -0.94
LTBR-212ENST00000543542 BCANQ96GW7 911 aa9.21□□□□□ -0.94
LTBR-212ENST00000543542 EID1Q9Y6B2 187 aa9.21□□□□□ -0.94
LTBR-212ENST00000543542 TMEM131LA2VDJ0 1609 aa9.2□□□□□ -0.94
LTBR-212ENST00000543542 POLR1AO95602 1720 aaPredicted RBP9.2□□□□□ -0.94
LTBR-212ENST00000543542 HDGFP51858 240 aaKnown RBP9.2□□□□□ -0.94
LTBR-212ENST00000543542 ANKLE2Q86XL3 938 aa9.2□□□□□ -0.94
LTBR-212ENST00000543542 NCKAP5LQ9HCH0 1330 aa9.2□□□□□ -0.94
LTBR-212ENST00000543542 RGL3Q3MIN7 710 aa9.19□□□□□ -0.94
LTBR-212ENST00000543542 TXNDC2Q86VQ3 553 aa9.19□□□□□ -0.94
LTBR-212ENST00000543542 SENP3Q9H4L4 574 aaPredicted RBP9.19□□□□□ -0.94
LTBR-212ENST00000543542 DHX57Q6P158 1386 aaKnown RBP9.19□□□□□ -0.94
LTBR-212ENST00000543542 PLA2R1Q13018 1463 aa9.19□□□□□ -0.94
LTBR-212ENST00000543542 NUTM2DQ5VT03 806 aaPredicted RBP9.18□□□□□ -0.94
LTBR-212ENST00000543542 DMRT2Q9Y5R5 561 aa9.18□□□□□ -0.94
LTBR-212ENST00000543542 STRCQ7RTU9 1775 aa9.17□□□□□ -0.94
LTBR-212ENST00000543542 RIMS2Q9UQ26 1411 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms