RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KIF3BO15066 747 aa22.07■■□□□ 1.12
USP28-209ENST00000540925 DUOX2Q9NRD8 1548 aa22.06■■□□□ 1.12
USP28-209ENST00000540925 PTPRKQ15262 1439 aa22.05■■□□□ 1.12
USP28-209ENST00000540925 HSPA2P54652 639 aa22.04■■□□□ 1.12
USP28-209ENST00000540925 KDM5DQ9BY66 1539 aa22.04■■□□□ 1.12
USP28-209ENST00000540925 UHRF1BP1Q6BDS2 1440 aa22.04■■□□□ 1.12
USP28-209ENST00000540925 MROH1Q8NDA8 1641 aa22.03■■□□□ 1.12
USP28-209ENST00000540925 KIF15Q9NS87 1388 aa22.02■■□□□ 1.12
USP28-209ENST00000540925 ADGRL2O95490 1459 aa22.01■■□□□ 1.11
USP28-209ENST00000540925 NCOA1Q15788 1441 aa22■■□□□ 1.11
USP28-209ENST00000540925 ERBINQ96RT1 1412 aa22■■□□□ 1.11
USP28-209ENST00000540925 PZPP20742 1482 aa21.97■■□□□ 1.11
USP28-209ENST00000540925 ABCC3O15438 1527 aa21.97■■□□□ 1.11
USP28-209ENST00000540925 ZC3H13Q5T200 1668 aaKnown RBP21.96■■□□□ 1.11
USP28-209ENST00000540925 RRP7BPQ9NSQ0 103 aa21.96■■□□□ 1.11
USP28-209ENST00000540925 ANKRD30AQ9BXX3 1397 aa21.96■■□□□ 1.11
USP28-209ENST00000540925 PRDM15P57071 1507 aaPredicted RBP21.96■■□□□ 1.11
USP28-209ENST00000540925 FAM50AQ14320 339 aaKnown RBP21.95■■□□□ 1.1
USP28-209ENST00000540925 WASHC2CQ9Y4E1 1318 aa21.95■■□□□ 1.1
USP28-209ENST00000540925 DEPDC5O75140 1603 aa21.95■■□□□ 1.1
USP28-209ENST00000540925 MYO3AQ8NEV4 1616 aa21.95■■□□□ 1.1
USP28-209ENST00000540925 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.94■■□□□ 1.1
USP28-209ENST00000540925 ZNF142P52746 1687 aaPredicted RBP21.94■■□□□ 1.1
USP28-209ENST00000540925 STRCQ7RTU9 1775 aa21.94■■□□□ 1.1
USP28-209ENST00000540925 CHIC2Q9UKJ5 165 aa21.93■■□□□ 1.1
USP28-209ENST00000540925 PPARGC1BQ86YN6 1023 aaKnown RBP21.91■■□□□ 1.1
USP28-209ENST00000540925 CEP170BQ9Y4F5 1589 aaPredicted RBP21.89■■□□□ 1.09
USP28-209ENST00000540925 VWDEQ8N2E2 1590 aa21.88■■□□□ 1.09
USP28-209ENST00000540925 FBXO31Q5XUX0 539 aaPredicted RBP21.88■■□□□ 1.09
USP28-209ENST00000540925 CEP152O94986 1710 aa21.87■■□□□ 1.09
USP28-209ENST00000540925 RRBP1Q9P2E9 1410 aaKnown RBP21.87■■□□□ 1.09
USP28-209ENST00000540925 CAMSAP1Q5T5Y3 1602 aa21.87■■□□□ 1.09
USP28-209ENST00000540925 ROCK1Q13464 1354 aa21.87■■□□□ 1.09
USP28-209ENST00000540925 TNRQ92752 1358 aa21.87■■□□□ 1.09
USP28-209ENST00000540925 SPATA31D1Q6ZQQ2 1576 aa21.86■■□□□ 1.09
USP28-209ENST00000540925 A2ML1A8K2U0 1454 aa21.85■■□□□ 1.09
USP28-209ENST00000540925 ARHGAP31Q2M1Z3 1444 aa21.85■■□□□ 1.09
USP28-209ENST00000540925 LMTK2Q8IWU2 1503 aa21.85■■□□□ 1.09
USP28-209ENST00000540925 ANKRD50Q9ULJ7 1429 aa21.83■■□□□ 1.09
USP28-209ENST00000540925 ERVK-7P63135 1459 aa21.83■■□□□ 1.08
USP28-209ENST00000540925 PLA2R1Q13018 1463 aa21.83■■□□□ 1.08
USP28-209ENST00000540925 NLRP1Q9C000 1473 aa21.81■■□□□ 1.08
USP28-209ENST00000540925 PTPRTO14522 1441 aa21.8■■□□□ 1.08
USP28-209ENST00000540925 CERKQ8TCT0 537 aa21.78■■□□□ 1.08
USP28-209ENST00000540925 DMRT2Q9Y5R5 561 aa21.77■■□□□ 1.08
USP28-209ENST00000540925 KANK1Q14678 1352 aa21.76■■□□□ 1.07
USP28-209ENST00000540925 UNC13BO14795 1591 aa21.75■■□□□ 1.07
USP28-209ENST00000540925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.75■■□□□ 1.07
USP28-209ENST00000540925 EFCAB6Q5THR3 1501 aa21.75■■□□□ 1.07
USP28-209ENST00000540925 ILDR2Q71H61 639 aa21.73■■□□□ 1.07
USP28-209ENST00000540925 UGGT1Q9NYU2 1555 aa21.72■■□□□ 1.07
USP28-209ENST00000540925 PKD2Q13563 968 aa21.71■■□□□ 1.07
USP28-209ENST00000540925 NCKAP5LQ9HCH0 1330 aa21.71■■□□□ 1.07
USP28-209ENST00000540925 CFAP65Q6ZU64 1925 aaKnown RBP21.69■■□□□ 1.06
USP28-209ENST00000540925 ITGAEP38570 1179 aa21.69■■□□□ 1.06
USP28-209ENST00000540925 NOS1P29475 1434 aa21.69■■□□□ 1.06
USP28-209ENST00000540925 NEURL4Q96JN8 1562 aa21.69■■□□□ 1.06
USP28-209ENST00000540925 TET3O43151 1660 aa21.68■■□□□ 1.06
USP28-209ENST00000540925 RPRD2Q5VT52 1461 aaKnown RBP21.67■■□□□ 1.06
USP28-209ENST00000540925 UBR1Q8IWV7 1749 aa21.66■■□□□ 1.06
USP28-209ENST00000540925 SYNMO15061 1565 aa21.66■■□□□ 1.06
USP28-209ENST00000540925 THEMISQ8N1K5 641 aaPredicted RBP21.66■■□□□ 1.06
USP28-209ENST00000540925 POLR1AO95602 1720 aaPredicted RBP21.66■■□□□ 1.06
USP28-209ENST00000540925 IQGAP3Q86VI3 1631 aa21.66■■□□□ 1.06
USP28-209ENST00000540925 SOCS7O14512 581 aa21.65■■□□□ 1.06
USP28-209ENST00000540925 LTBP4Q8N2S1 1624 aa21.65■■□□□ 1.06
USP28-209ENST00000540925 GCC2Q8IWJ2 1684 aa21.64■■□□□ 1.05
USP28-209ENST00000540925 NAIPQ13075 1403 aa21.63■■□□□ 1.05
USP28-209ENST00000540925 DISP3Q9P2K9 1392 aa21.63■■□□□ 1.05
USP28-209ENST00000540925 MED14O60244 1454 aa21.63■■□□□ 1.05
USP28-209ENST00000540925 ARHGAP23Q9P227 1491 aa21.62■■□□□ 1.05
USP28-209ENST00000540925 KDM5AP29375 1690 aaKnown RBP21.62■■□□□ 1.05
USP28-209ENST00000540925 PIK3C2BO00750 1634 aa21.62■■□□□ 1.05
USP28-209ENST00000540925 SLIT1O75093 1534 aa21.6■■□□□ 1.05
USP28-209ENST00000540925 HFM1A2PYH4 1435 aa21.59■■□□□ 1.05
USP28-209ENST00000540925 E9PCH4 1651 aa21.59■■□□□ 1.05
USP28-209ENST00000540925 ANKLE2Q86XL3 938 aa21.58■■□□□ 1.05
USP28-209ENST00000540925 IDI1Q13907 227 aa21.57■■□□□ 1.04
USP28-209ENST00000540925 NUP155O75694 1391 aa21.57■■□□□ 1.04
USP28-209ENST00000540925 NPHP4O75161 1426 aaPredicted RBP21.55■■□□□ 1.04
USP28-209ENST00000540925 SLC52A1Q9NWF4 448 aa21.54■■□□□ 1.04
USP28-209ENST00000540925 ADGRB3O60242 1522 aa21.54■■□□□ 1.04
USP28-209ENST00000540925 ZNF335Q9H4Z2 1342 aaPredicted RBP21.54■■□□□ 1.04
USP28-209ENST00000540925 IQGAP1P46940 1657 aa21.53■■□□□ 1.04
USP28-209ENST00000540925 SCAF11Q99590 1463 aaKnown RBP21.52■■□□□ 1.04
USP28-209ENST00000540925 TMEM2Q9UHN6 1383 aa21.52■■□□□ 1.04
USP28-209ENST00000540925 IQSEC2Q5JU85 1478 aa21.52■■□□□ 1.03
USP28-209ENST00000540925 LTKP29376 864 aa21.51■■□□□ 1.03
USP28-209ENST00000540925 TMEM131LA2VDJ0 1609 aa21.47■■□□□ 1.03
USP28-209ENST00000540925 TXNDC2Q86VQ3 553 aa21.45■■□□□ 1.02
USP28-209ENST00000540925 ZFYVE9O95405 1425 aa21.45■■□□□ 1.02
USP28-209ENST00000540925 MYO5BQ9ULV0 1848 aa21.43■■□□□ 1.02
USP28-209ENST00000540925 CPS1P31327 1500 aa21.43■■□□□ 1.02
USP28-209ENST00000540925 SPHKAPQ2M3C7 1700 aa21.42■■□□□ 1.02
USP28-209ENST00000540925 STAG3Q9UJ98 1225 aa21.42■■□□□ 1.02
USP28-209ENST00000540925 EID1Q9Y6B2 187 aa21.41■■□□□ 1.02
USP28-209ENST00000540925 STRCP1A6NGW2 1772 aa21.41■■□□□ 1.02
USP28-209ENST00000540925 TRPM2O94759 1503 aa21.38■■□□□ 1.01
USP28-209ENST00000540925 RIMS2Q9UQ26 1411 aa21.36■■□□□ 1.01
USP28-209ENST00000540925 CLTCL1P53675 1640 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 156.1 ms