RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ATP10AO60312 1499 aa16■□□□□ 0.15
VPS33A-204ENST00000540669 TSPY4P0CV99 314 aa15.99■□□□□ 0.15
VPS33A-204ENST00000540669 TSPY10P0CW01 314 aa15.99■□□□□ 0.15
VPS33A-204ENST00000540669 ANKRD50Q9ULJ7 1429 aa15.99■□□□□ 0.15
VPS33A-204ENST00000540669 DHX29Q7Z478 1369 aaKnown RBP15.99■□□□□ 0.15
VPS33A-204ENST00000540669 FAM135AQ9P2D6 1515 aa15.99■□□□□ 0.15
VPS33A-204ENST00000540669 SETD5Q9C0A6 1442 aa15.98■□□□□ 0.15
VPS33A-204ENST00000540669 IQGAP3Q86VI3 1631 aa15.97■□□□□ 0.15
VPS33A-204ENST00000540669 RAB3GAP2Q9H2M9 1393 aa15.95■□□□□ 0.14
VPS33A-204ENST00000540669 CHIC2Q9UKJ5 165 aa15.94■□□□□ 0.14
VPS33A-204ENST00000540669 ZC3H13Q5T200 1668 aaKnown RBP15.94■□□□□ 0.14
VPS33A-204ENST00000540669 HRCP23327 699 aa15.93■□□□□ 0.14
VPS33A-204ENST00000540669 LMTK2Q8IWU2 1503 aa15.93■□□□□ 0.14
VPS33A-204ENST00000540669 ITGAEP38570 1179 aa15.92■□□□□ 0.14
VPS33A-204ENST00000540669 PZPP20742 1482 aa15.91■□□□□ 0.14
VPS33A-204ENST00000540669 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
VPS33A-204ENST00000540669 RRP7BPQ9NSQ0 103 aa15.9■□□□□ 0.14
VPS33A-204ENST00000540669 TET3O43151 1660 aa15.89■□□□□ 0.13
VPS33A-204ENST00000540669 CEP152O94986 1710 aa15.87■□□□□ 0.13
VPS33A-204ENST00000540669 ABCC3O15438 1527 aa15.87■□□□□ 0.13
VPS33A-204ENST00000540669 MROH2AA6NES4 1674 aa15.86■□□□□ 0.13
VPS33A-204ENST00000540669 ADAMTSL3P82987 1691 aa15.86■□□□□ 0.13
VPS33A-204ENST00000540669 EFCAB6Q5THR3 1501 aa15.86■□□□□ 0.13
VPS33A-204ENST00000540669 CAMSAP1Q5T5Y3 1602 aa15.85■□□□□ 0.13
VPS33A-204ENST00000540669 ACIN1Q9UKV3 1341 aaKnown RBP15.85■□□□□ 0.13
VPS33A-204ENST00000540669 E9PCH4 1651 aa15.83■□□□□ 0.12
VPS33A-204ENST00000540669 FER1L4A9Z1Z3 1794 aa15.81■□□□□ 0.12
VPS33A-204ENST00000540669 MYT1LQ9UL68 1186 aa15.81■□□□□ 0.12
VPS33A-204ENST00000540669 CLTCQ00610 1675 aaKnown RBP15.79■□□□□ 0.12
VPS33A-204ENST00000540669 ARHGAP31Q2M1Z3 1444 aa15.79■□□□□ 0.12
VPS33A-204ENST00000540669 DHX57Q6P158 1386 aaKnown RBP15.79■□□□□ 0.12
VPS33A-204ENST00000540669 MADDQ8WXG6 1647 aa15.78■□□□□ 0.12
VPS33A-204ENST00000540669 RPRD2Q5VT52 1461 aaKnown RBP15.78■□□□□ 0.12
VPS33A-204ENST00000540669 KIF3BO15066 747 aa15.76■□□□□ 0.11
VPS33A-204ENST00000540669 SPHKAPQ2M3C7 1700 aa15.76■□□□□ 0.11
VPS33A-204ENST00000540669 CNTLNQ9NXG0 1405 aa15.75■□□□□ 0.11
VPS33A-204ENST00000540669 NUP155O75694 1391 aa15.75■□□□□ 0.11
VPS33A-204ENST00000540669 PREX1Q8TCU6 1659 aa15.74■□□□□ 0.11
VPS33A-204ENST00000540669 NPATQ14207 1427 aa15.74■□□□□ 0.11
VPS33A-204ENST00000540669 SPATA31D1Q6ZQQ2 1576 aa15.74■□□□□ 0.11
VPS33A-204ENST00000540669 TRPM2O94759 1503 aa15.73■□□□□ 0.11
VPS33A-204ENST00000540669 C3P01024 1663 aa15.73■□□□□ 0.11
VPS33A-204ENST00000540669 PIK3C2BO00750 1634 aa15.73■□□□□ 0.11
VPS33A-204ENST00000540669 PTPRTO14522 1441 aa15.73■□□□□ 0.11
VPS33A-204ENST00000540669 PLA2R1Q13018 1463 aa15.72■□□□□ 0.11
VPS33A-204ENST00000540669 ARID4BQ4LE39 1312 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-204ENST00000540669 SYNMO15061 1565 aa15.71■□□□□ 0.11
VPS33A-204ENST00000540669 NOS1P29475 1434 aa15.71■□□□□ 0.11
VPS33A-204ENST00000540669 KANK1Q14678 1352 aa15.71■□□□□ 0.11
VPS33A-204ENST00000540669 RIMS1Q86UR5 1692 aaKnown RBP15.7■□□□□ 0.1
VPS33A-204ENST00000540669 NEURL4Q96JN8 1562 aa15.69■□□□□ 0.1
VPS33A-204ENST00000540669 ERVK-7P63135 1459 aa15.68■□□□□ 0.1
VPS33A-204ENST00000540669 ANKRD30BQ9BXX2 1392 aa15.67■□□□□ 0.1
VPS33A-204ENST00000540669 MPHOSPH9Q99550 1183 aa15.67■□□□□ 0.1
VPS33A-204ENST00000540669 CLTCL1P53675 1640 aa15.66■□□□□ 0.1
VPS33A-204ENST00000540669 POTEDQ86YR6 584 aa15.66■□□□□ 0.1
VPS33A-204ENST00000540669 CLSPNQ9HAW4 1339 aa15.66■□□□□ 0.1
VPS33A-204ENST00000540669 KDM5AP29375 1690 aaKnown RBP15.65■□□□□ 0.1
VPS33A-204ENST00000540669 GGT6Q6P531 493 aa15.64■□□□□ 0.09
VPS33A-204ENST00000540669 ZNF142P52746 1687 aaPredicted RBP15.63■□□□□ 0.09
VPS33A-204ENST00000540669 SLC4A1APQ9BWU0 796 aaKnown RBP15.62■□□□□ 0.09
VPS33A-204ENST00000540669 WASHC2CQ9Y4E1 1318 aa15.62■□□□□ 0.09
VPS33A-204ENST00000540669 PKD2Q13563 968 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 TRIM52Q96A61 297 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 ADGRB3O60242 1522 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 UGGT1Q9NYU2 1555 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 ZMYM3Q14202 1370 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 MYO3AQ8NEV4 1616 aa15.61■□□□□ 0.09
VPS33A-204ENST00000540669 PTPRMP28827 1452 aa15.6■□□□□ 0.09
VPS33A-204ENST00000540669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS33A-204ENST00000540669 ESF1Q9H501 851 aaKnown RBP15.6■□□□□ 0.09
VPS33A-204ENST00000540669 IFT172Q9UG01 1749 aa15.59■□□□□ 0.09
VPS33A-204ENST00000540669 SPATA31E1Q6ZUB1 1445 aa15.58■□□□□ 0.08
VPS33A-204ENST00000540669 TMEM131LA2VDJ0 1609 aa15.57■□□□□ 0.08
VPS33A-204ENST00000540669 KDM4FA0A1W2PPD8 638 aa15.57■□□□□ 0.08
VPS33A-204ENST00000540669 CFAP65Q6ZU64 1925 aaKnown RBP15.56■□□□□ 0.08
VPS33A-204ENST00000540669 MLECQ14165 292 aa15.56■□□□□ 0.08
VPS33A-204ENST00000540669 KIF1BO60333 1816 aa15.56■□□□□ 0.08
VPS33A-204ENST00000540669 UBR1Q8IWV7 1749 aa15.55■□□□□ 0.08
VPS33A-204ENST00000540669 NLRP1Q9C000 1473 aa15.55■□□□□ 0.08
VPS33A-204ENST00000540669 PPP4R3CPQ6ZMV5 832 aa15.54■□□□□ 0.08
VPS33A-204ENST00000540669 MYO5BQ9ULV0 1848 aa15.54■□□□□ 0.08
VPS33A-204ENST00000540669 CCDC144AA2RUR9 1427 aa15.53■□□□□ 0.08
VPS33A-204ENST00000540669 SETD1BQ9UPS6 1966 aaKnown RBP15.53■□□□□ 0.08
VPS33A-204ENST00000540669 CEP170BQ9Y4F5 1589 aaPredicted RBP15.52■□□□□ 0.07
VPS33A-204ENST00000540669 TNRQ92752 1358 aa15.51■□□□□ 0.07
VPS33A-204ENST00000540669 PPLO60437 1756 aa15.5■□□□□ 0.07
VPS33A-204ENST00000540669 A2ML1A8K2U0 1454 aa15.49■□□□□ 0.07
VPS33A-204ENST00000540669 FBXO31Q5XUX0 539 aaPredicted RBP15.49■□□□□ 0.07
VPS33A-204ENST00000540669 NEXMIFQ5QGS0 1516 aa15.48■□□□□ 0.07
VPS33A-204ENST00000540669 ARHGAP23Q9P227 1491 aa15.47■□□□□ 0.07
VPS33A-204ENST00000540669 SLIT1O75093 1534 aa15.47■□□□□ 0.07
VPS33A-204ENST00000540669 NRXN1Q9ULB1 1477 aa15.46■□□□□ 0.07
VPS33A-204ENST00000540669 SLC52A1Q9NWF4 448 aa15.46■□□□□ 0.07
VPS33A-204ENST00000540669 MYOM2P54296 1465 aa15.46■□□□□ 0.06
VPS33A-204ENST00000540669 ZFYVE9O95405 1425 aa15.45■□□□□ 0.06
VPS33A-204ENST00000540669 CCER1Q8TC90 406 aaPredicted RBP15.45■□□□□ 0.06
VPS33A-204ENST00000540669 CEBPAP49715 358 aaPredicted RBP15.43■□□□□ 0.06
VPS33A-204ENST00000540669 IDI1Q13907 227 aa15.42■□□□□ 0.06
VPS33A-204ENST00000540669 SIN3AQ96ST3 1273 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms