RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 PKD2Q13563 968 aa29.56■■■□□ 2.32
TNFRSF1A-205ENST00000534885 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.56■■■□□ 2.32
TNFRSF1A-205ENST00000534885 ANKRD30BQ9BXX2 1392 aa29.55■■■□□ 2.32
TNFRSF1A-205ENST00000534885 IQGAP3Q86VI3 1631 aa29.53■■■□□ 2.32
TNFRSF1A-205ENST00000534885 EIF2AK4Q9P2K8 1649 aaKnown RBP29.52■■■□□ 2.32
TNFRSF1A-205ENST00000534885 A2MP01023 1474 aa29.52■■■□□ 2.32
TNFRSF1A-205ENST00000534885 DEPDC5O75140 1603 aa29.52■■■□□ 2.32
TNFRSF1A-205ENST00000534885 DIP2CQ9Y2E4 1556 aa29.49■■■□□ 2.31
TNFRSF1A-205ENST00000534885 ZMYM4Q5VZL5 1548 aa29.49■■■□□ 2.31
TNFRSF1A-205ENST00000534885 KIF3BO15066 747 aa29.48■■■□□ 2.31
TNFRSF1A-205ENST00000534885 YEATS2Q9ULM3 1422 aa29.47■■■□□ 2.31
TNFRSF1A-205ENST00000534885 COL17A1Q9UMD9 1497 aaPredicted RBP29.45■■■□□ 2.31
TNFRSF1A-205ENST00000534885 TIMELESSQ9UNS1 1208 aa29.45■■■□□ 2.31
TNFRSF1A-205ENST00000534885 TONSLQ96HA7 1378 aa29.44■■■□□ 2.3
TNFRSF1A-205ENST00000534885 MROH1Q8NDA8 1641 aa29.43■■■□□ 2.3
TNFRSF1A-205ENST00000534885 PRDM15P57071 1507 aaPredicted RBP29.41■■■□□ 2.3
TNFRSF1A-205ENST00000534885 RPRD2Q5VT52 1461 aaKnown RBP29.41■■■□□ 2.3
TNFRSF1A-205ENST00000534885 VWDEQ8N2E2 1590 aa29.39■■■□□ 2.3
TNFRSF1A-205ENST00000534885 RNF17Q9BXT8 1623 aaKnown RBP29.38■■■□□ 2.29
TNFRSF1A-205ENST00000534885 TRHP20396 242 aaPredicted RBP29.38■■■□□ 2.29
TNFRSF1A-205ENST00000534885 BCORL1Q5H9F3 1711 aa29.37■■■□□ 2.29
TNFRSF1A-205ENST00000534885 KANK1Q14678 1352 aa29.34■■■□□ 2.29
TNFRSF1A-205ENST00000534885 PPP1R15AO75807 674 aaPredicted RBP29.32■■■□□ 2.28
TNFRSF1A-205ENST00000534885 E9PCH4 1651 aa29.32■■■□□ 2.28
TNFRSF1A-205ENST00000534885 TET3O43151 1660 aa29.32■■■□□ 2.28
TNFRSF1A-205ENST00000534885 PLA2R1Q13018 1463 aa29.29■■■□□ 2.28
TNFRSF1A-205ENST00000534885 ATP10AO60312 1499 aa29.29■■■□□ 2.28
TNFRSF1A-205ENST00000534885 GGT6Q6P531 493 aa29.28■■■□□ 2.28
TNFRSF1A-205ENST00000534885 CEP152O94986 1710 aa29.27■■■□□ 2.28
TNFRSF1A-205ENST00000534885 L3MBTL2Q969R5 705 aa29.26■■■□□ 2.27
TNFRSF1A-205ENST00000534885 ARHGEF40Q8TER5 1519 aa29.24■■■□□ 2.27
TNFRSF1A-205ENST00000534885 REREQ9P2R6 1566 aa29.23■■■□□ 2.27
TNFRSF1A-205ENST00000534885 LMTK2Q8IWU2 1503 aa29.23■■■□□ 2.27
TNFRSF1A-205ENST00000534885 EFCAB6Q5THR3 1501 aa29.22■■■□□ 2.27
TNFRSF1A-205ENST00000534885 CCDC144AA2RUR9 1427 aa29.22■■■□□ 2.27
TNFRSF1A-205ENST00000534885 SIGLEC1Q9BZZ2 1709 aa29.2■■■□□ 2.26
TNFRSF1A-205ENST00000534885 SPHKAPQ2M3C7 1700 aa29.18■■■□□ 2.26
TNFRSF1A-205ENST00000534885 ABCC3O15438 1527 aa29.18■■■□□ 2.26
TNFRSF1A-205ENST00000534885 ZNF316A6NFI3 1004 aaPredicted RBP29.15■■■□□ 2.26
TNFRSF1A-205ENST00000534885 WASHC2CQ9Y4E1 1318 aa29.15■■■□□ 2.26
TNFRSF1A-205ENST00000534885 PTPRTO14522 1441 aa29.14■■■□□ 2.26
TNFRSF1A-205ENST00000534885 TRPM2O94759 1503 aa29.14■■■□□ 2.26
TNFRSF1A-205ENST00000534885 AGLP35573 1532 aa29.14■■■□□ 2.26
TNFRSF1A-205ENST00000534885 CAMSAP1Q5T5Y3 1602 aa29.11■■■□□ 2.25
TNFRSF1A-205ENST00000534885 ZC3H13Q5T200 1668 aaKnown RBP29.1■■■□□ 2.25
TNFRSF1A-205ENST00000534885 NPATQ14207 1427 aa29.1■■■□□ 2.25
TNFRSF1A-205ENST00000534885 CFAP65Q6ZU64 1925 aaKnown RBP29.07■■■□□ 2.24
TNFRSF1A-205ENST00000534885 CLTCL1P53675 1640 aa29.07■■■□□ 2.24
TNFRSF1A-205ENST00000534885 NBPF8Q3BBV2 869 aa29.05■■■□□ 2.24
TNFRSF1A-205ENST00000534885 UGGT1Q9NYU2 1555 aa29.02■■■□□ 2.24
TNFRSF1A-205ENST00000534885 RGL3Q3MIN7 710 aa29.01■■■□□ 2.24
TNFRSF1A-205ENST00000534885 MLECQ14165 292 aa28.99■■■□□ 2.23
TNFRSF1A-205ENST00000534885 DCAF11Q8TEB1 546 aa28.99■■■□□ 2.23
TNFRSF1A-205ENST00000534885 SPATA31E1Q6ZUB1 1445 aa28.99■■■□□ 2.23
TNFRSF1A-205ENST00000534885 ARHGAP31Q2M1Z3 1444 aa28.98■■■□□ 2.23
TNFRSF1A-205ENST00000534885 KDM2AQ9Y2K7 1162 aa28.97■■■□□ 2.23
TNFRSF1A-205ENST00000534885 ZNF326Q5BKZ1 582 aaKnown RBP28.96■■■□□ 2.23
TNFRSF1A-205ENST00000534885 CLTCQ00610 1675 aaKnown RBP28.95■■■□□ 2.22
TNFRSF1A-205ENST00000534885 PPP6R1Q9UPN7 881 aa28.94■■■□□ 2.22
TNFRSF1A-205ENST00000534885 UHRF1BP1Q6BDS2 1440 aa28.94■■■□□ 2.22
TNFRSF1A-205ENST00000534885 CNTLNQ9NXG0 1405 aa28.94■■■□□ 2.22
TNFRSF1A-205ENST00000534885 NOS1P29475 1434 aa28.93■■■□□ 2.22
TNFRSF1A-205ENST00000534885 ARID4BQ4LE39 1312 aaPredicted RBP28.93■■■□□ 2.22
TNFRSF1A-205ENST00000534885 KIF1BO60333 1816 aa28.91■■■□□ 2.22
TNFRSF1A-205ENST00000534885 SYNMO15061 1565 aa28.91■■■□□ 2.22
TNFRSF1A-205ENST00000534885 PREX1Q8TCU6 1659 aa28.89■■■□□ 2.21
TNFRSF1A-205ENST00000534885 HIRIP3Q9BW71 556 aaPredicted RBP28.88■■■□□ 2.21
TNFRSF1A-205ENST00000534885 NEURL4Q96JN8 1562 aa28.87■■■□□ 2.21
TNFRSF1A-205ENST00000534885 MROH2AA6NES4 1674 aa28.87■■■□□ 2.21
TNFRSF1A-205ENST00000534885 PRAG1Q86YV5 1406 aa28.85■■■□□ 2.21
TNFRSF1A-205ENST00000534885 PIK3C2BO00750 1634 aa28.85■■■□□ 2.21
TNFRSF1A-205ENST00000534885 RALGAPBQ86X10 1494 aa28.83■■■□□ 2.21
TNFRSF1A-205ENST00000534885 ADGRB3O60242 1522 aa28.83■■■□□ 2.2
TNFRSF1A-205ENST00000534885 FBXO31Q5XUX0 539 aaPredicted RBP28.82■■■□□ 2.2
TNFRSF1A-205ENST00000534885 DIEXFQ68CQ4 756 aaKnown RBP28.81■■■□□ 2.2
TNFRSF1A-205ENST00000534885 ERVK-7P63135 1459 aa28.8■■■□□ 2.2
TNFRSF1A-205ENST00000534885 TRPM1Q7Z4N2 1603 aa28.79■■■□□ 2.2
TNFRSF1A-205ENST00000534885 ESF1Q9H501 851 aaKnown RBP28.79■■■□□ 2.2
TNFRSF1A-205ENST00000534885 HSPA5P11021 654 aaKnown RBP28.78■■■□□ 2.2
TNFRSF1A-205ENST00000534885 CHGAP10645 457 aaKnown RBP28.78■■■□□ 2.2
TNFRSF1A-205ENST00000534885 EIF4G2P78344 907 aaKnown RBP eCLIP28.78■■■□□ 2.2
TNFRSF1A-205ENST00000534885 IFT172Q9UG01 1749 aa28.76■■■□□ 2.19
TNFRSF1A-205ENST00000534885 ZMYM3Q14202 1370 aa28.75■■■□□ 2.19
TNFRSF1A-205ENST00000534885 IDI1Q13907 227 aa28.75■■■□□ 2.19
TNFRSF1A-205ENST00000534885 MADDQ8WXG6 1647 aa28.75■■■□□ 2.19
TNFRSF1A-205ENST00000534885 SPATA31D1Q6ZQQ2 1576 aa28.74■■■□□ 2.19
TNFRSF1A-205ENST00000534885 SLC52A1Q9NWF4 448 aa28.73■■■□□ 2.19
TNFRSF1A-205ENST00000534885 ROCK2O75116 1388 aaKnown RBP28.71■■■□□ 2.19
TNFRSF1A-205ENST00000534885 STAC3Q96MF2 364 aa28.7■■■□□ 2.18
TNFRSF1A-205ENST00000534885 CARD11Q9BXL7 1154 aa28.7■■■□□ 2.18
TNFRSF1A-205ENST00000534885 USP47Q96K76 1375 aa28.68■■■□□ 2.18
TNFRSF1A-205ENST00000534885 MYOM2P54296 1465 aa28.68■■■□□ 2.18
TNFRSF1A-205ENST00000534885 PPLO60437 1756 aa28.68■■■□□ 2.18
TNFRSF1A-205ENST00000534885 MYO5BQ9ULV0 1848 aa28.68■■■□□ 2.18
TNFRSF1A-205ENST00000534885 NBPF1Q3BBV0 1214 aa28.68■■■□□ 2.18
TNFRSF1A-205ENST00000534885 FER1L4A9Z1Z3 1794 aa28.66■■■□□ 2.18
TNFRSF1A-205ENST00000534885 TMEM131LA2VDJ0 1609 aa28.66■■■□□ 2.18
TNFRSF1A-205ENST00000534885 ADGRF5Q8IZF2 1346 aa28.64■■■□□ 2.18
TNFRSF1A-205ENST00000534885 GPRASP1Q5JY77 1395 aa28.64■■■□□ 2.17
TNFRSF1A-205ENST00000534885 NEXMIFQ5QGS0 1516 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms