RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 ZMYM3Q14202 1370 aa7.95□□□□□ -1.14
USH1C-210ENST00000534556 KIF3BO15066 747 aa7.94□□□□□ -1.14
USH1C-210ENST00000534556 APLP2Q06481 763 aa7.94□□□□□ -1.14
USH1C-210ENST00000534556 RSPH4AQ5TD94 716 aa7.94□□□□□ -1.14
USH1C-210ENST00000534556 ABCC3O15438 1527 aa7.93□□□□□ -1.14
USH1C-210ENST00000534556 DUOX2Q9NRD8 1548 aa7.93□□□□□ -1.14
USH1C-210ENST00000534556 ZC3H13Q5T200 1668 aaKnown RBP7.93□□□□□ -1.14
USH1C-210ENST00000534556 CNTLNQ9NXG0 1405 aa7.93□□□□□ -1.14
USH1C-210ENST00000534556 ADGRL2O95490 1459 aa7.93□□□□□ -1.14
USH1C-210ENST00000534556 KDM5DQ9BY66 1539 aa7.93□□□□□ -1.14
USH1C-210ENST00000534556 MYO5BQ9ULV0 1848 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 TSPY4P0CV99 314 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 TSPY10P0CW01 314 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 FBXO31Q5XUX0 539 aaPredicted RBP7.92□□□□□ -1.14
USH1C-210ENST00000534556 CHIC2Q9UKJ5 165 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 NCOA1Q15788 1441 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 PRDM15P57071 1507 aaPredicted RBP7.92□□□□□ -1.14
USH1C-210ENST00000534556 VWDEQ8N2E2 1590 aa7.92□□□□□ -1.14
USH1C-210ENST00000534556 CEP170BQ9Y4F5 1589 aaPredicted RBP7.92□□□□□ -1.14
USH1C-210ENST00000534556 RRP7BPQ9NSQ0 103 aa7.91□□□□□ -1.14
USH1C-210ENST00000534556 KIF15Q9NS87 1388 aa7.91□□□□□ -1.14
USH1C-210ENST00000534556 POLR1AO95602 1720 aaPredicted RBP7.91□□□□□ -1.14
USH1C-210ENST00000534556 FAM135AQ9P2D6 1515 aa7.9□□□□□ -1.14
USH1C-210ENST00000534556 PZPP20742 1482 aa7.9□□□□□ -1.14
USH1C-210ENST00000534556 NPATQ14207 1427 aa7.9□□□□□ -1.14
USH1C-210ENST00000534556 UHRF1BP1Q6BDS2 1440 aa7.9□□□□□ -1.14
USH1C-210ENST00000534556 UBR1Q8IWV7 1749 aa7.89□□□□□ -1.15
USH1C-210ENST00000534556 SPATA31D1Q6ZQQ2 1576 aa7.89□□□□□ -1.15
USH1C-210ENST00000534556 FAM50AQ14320 339 aaKnown RBP7.89□□□□□ -1.15
USH1C-210ENST00000534556 UNC13BO14795 1591 aa7.88□□□□□ -1.15
USH1C-210ENST00000534556 ERBINQ96RT1 1412 aa7.88□□□□□ -1.15
USH1C-210ENST00000534556 SYNMO15061 1565 aa7.88□□□□□ -1.15
USH1C-210ENST00000534556 NEURL4Q96JN8 1562 aa7.88□□□□□ -1.15
USH1C-210ENST00000534556 STRCP1A6NGW2 1772 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 E9PCH4 1651 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 GCC2Q8IWJ2 1684 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 ESF1Q9H501 851 aaKnown RBP7.87□□□□□ -1.15
USH1C-210ENST00000534556 PPP6R1Q9UPN7 881 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 A2ML1A8K2U0 1454 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 ERVK-7P63135 1459 aa7.87□□□□□ -1.15
USH1C-210ENST00000534556 RRBP1Q9P2E9 1410 aaKnown RBP7.86□□□□□ -1.15
USH1C-210ENST00000534556 ANKRD30AQ9BXX3 1397 aa7.86□□□□□ -1.15
USH1C-210ENST00000534556 PIK3C2BO00750 1634 aa7.86□□□□□ -1.15
USH1C-210ENST00000534556 WASHC2CQ9Y4E1 1318 aa7.86□□□□□ -1.15
USH1C-210ENST00000534556 TET3O43151 1660 aa7.86□□□□□ -1.15
USH1C-210ENST00000534556 LTBP4Q8N2S1 1624 aa7.85□□□□□ -1.15
USH1C-210ENST00000534556 TNRQ92752 1358 aa7.85□□□□□ -1.15
USH1C-210ENST00000534556 EFCAB6Q5THR3 1501 aa7.85□□□□□ -1.15
USH1C-210ENST00000534556 LMTK2Q8IWU2 1503 aa7.85□□□□□ -1.15
USH1C-210ENST00000534556 IQGAP3Q86VI3 1631 aa7.85□□□□□ -1.15
USH1C-210ENST00000534556 NCKAP5LQ9HCH0 1330 aa7.84□□□□□ -1.15
USH1C-210ENST00000534556 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.84□□□□□ -1.15
USH1C-210ENST00000534556 ARHGAP31Q2M1Z3 1444 aa7.84□□□□□ -1.15
USH1C-210ENST00000534556 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.84□□□□□ -1.16
USH1C-210ENST00000534556 ITGAEP38570 1179 aa7.83□□□□□ -1.16
USH1C-210ENST00000534556 PTPRTO14522 1441 aa7.83□□□□□ -1.16
USH1C-210ENST00000534556 ANKRD50Q9ULJ7 1429 aa7.83□□□□□ -1.16
USH1C-210ENST00000534556 UGGT1Q9NYU2 1555 aa7.83□□□□□ -1.16
USH1C-210ENST00000534556 ROCK1Q13464 1354 aa7.83□□□□□ -1.16
USH1C-210ENST00000534556 XIRP1Q702N8 1843 aaKnown RBP7.82□□□□□ -1.16
USH1C-210ENST00000534556 PLA2R1Q13018 1463 aa7.82□□□□□ -1.16
USH1C-210ENST00000534556 KDM5AP29375 1690 aaKnown RBP7.82□□□□□ -1.16
USH1C-210ENST00000534556 SPHKAPQ2M3C7 1700 aa7.81□□□□□ -1.16
USH1C-210ENST00000534556 NOS1P29475 1434 aa7.81□□□□□ -1.16
USH1C-210ENST00000534556 IQGAP1P46940 1657 aa7.81□□□□□ -1.16
USH1C-210ENST00000534556 NLRP1Q9C000 1473 aa7.81□□□□□ -1.16
USH1C-210ENST00000534556 NAIPQ13075 1403 aa7.8□□□□□ -1.16
USH1C-210ENST00000534556 TMEM131LA2VDJ0 1609 aa7.8□□□□□ -1.16
USH1C-210ENST00000534556 ARHGAP23Q9P227 1491 aa7.79□□□□□ -1.16
USH1C-210ENST00000534556 SLIT1O75093 1534 aa7.78□□□□□ -1.16
USH1C-210ENST00000534556 IDI1Q13907 227 aa7.78□□□□□ -1.16
USH1C-210ENST00000534556 MED14O60244 1454 aa7.78□□□□□ -1.16
USH1C-210ENST00000534556 ADGRB3O60242 1522 aa7.78□□□□□ -1.16
USH1C-210ENST00000534556 ZNF335Q9H4Z2 1342 aaPredicted RBP7.78□□□□□ -1.16
USH1C-210ENST00000534556 KANK1Q14678 1352 aa7.77□□□□□ -1.17
USH1C-210ENST00000534556 LTKP29376 864 aa7.77□□□□□ -1.17
USH1C-210ENST00000534556 CERKQ8TCT0 537 aa7.77□□□□□ -1.17
USH1C-210ENST00000534556 ALKQ9UM73 1620 aa7.77□□□□□ -1.17
USH1C-210ENST00000534556 CLTCL1P53675 1640 aa7.76□□□□□ -1.17
USH1C-210ENST00000534556 CHD2O14647 1828 aaKnown RBP7.75□□□□□ -1.17
USH1C-210ENST00000534556 RPRD2Q5VT52 1461 aaKnown RBP7.75□□□□□ -1.17
USH1C-210ENST00000534556 PKD2Q13563 968 aa7.75□□□□□ -1.17
USH1C-210ENST00000534556 HFM1A2PYH4 1435 aa7.75□□□□□ -1.17
USH1C-210ENST00000534556 NPHP4O75161 1426 aaPredicted RBP7.75□□□□□ -1.17
USH1C-210ENST00000534556 KIF1BO60333 1816 aa7.75□□□□□ -1.17
USH1C-210ENST00000534556 NUP155O75694 1391 aa7.74□□□□□ -1.17
USH1C-210ENST00000534556 THEMISQ8N1K5 641 aaPredicted RBP7.74□□□□□ -1.17
USH1C-210ENST00000534556 FBXO41Q8TF61 875 aa7.74□□□□□ -1.17
USH1C-210ENST00000534556 DMRT2Q9Y5R5 561 aa7.74□□□□□ -1.17
USH1C-210ENST00000534556 SCAF11Q99590 1463 aaKnown RBP7.74□□□□□ -1.17
USH1C-210ENST00000534556 ZFYVE9O95405 1425 aa7.73□□□□□ -1.17
USH1C-210ENST00000534556 NRXN3Q9Y4C0 1643 aa7.73□□□□□ -1.17
USH1C-210ENST00000534556 TMEM2Q9UHN6 1383 aa7.72□□□□□ -1.17
USH1C-210ENST00000534556 ANKLE2Q86XL3 938 aa7.72□□□□□ -1.17
USH1C-210ENST00000534556 SETD1AO15047 1707 aaKnown RBP7.72□□□□□ -1.17
USH1C-210ENST00000534556 SENP3Q9H4L4 574 aaPredicted RBP7.71□□□□□ -1.18
USH1C-210ENST00000534556 IFT172Q9UG01 1749 aa7.71□□□□□ -1.18
USH1C-210ENST00000534556 PPLO60437 1756 aa7.71□□□□□ -1.18
USH1C-210ENST00000534556 TRPM2O94759 1503 aa7.7□□□□□ -1.18
USH1C-210ENST00000534556 LRRC7Q96NW7 1537 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms