RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ZNF644Q9H582 1327 aaPredicted RBP25.28■■□□□ 1.64
CHMP4A-207ENST00000533523 CEP162Q5TB80 1403 aa25.28■■□□□ 1.64
CHMP4A-207ENST00000533523 MBD5Q9P267 1494 aa25.26■■□□□ 1.63
CHMP4A-207ENST00000533523 PPP6R1Q9UPN7 881 aa25.25■■□□□ 1.63
CHMP4A-207ENST00000533523 CPS1P31327 1500 aa25.22■■□□□ 1.63
CHMP4A-207ENST00000533523 SHANK2Q9UPX8 1470 aa25.22■■□□□ 1.63
CHMP4A-207ENST00000533523 CAMSAP2Q08AD1 1489 aa25.21■■□□□ 1.63
CHMP4A-207ENST00000533523 CCDC141Q6ZP82 1450 aa25.21■■□□□ 1.63
CHMP4A-207ENST00000533523 RTEL1-TNFRSF6BF6WH68 1400 aa25.2■■□□□ 1.63
CHMP4A-207ENST00000533523 NCOA2Q15596 1464 aa25.2■■□□□ 1.62
CHMP4A-207ENST00000533523 PIP4K2BP78356 416 aa25.18■■□□□ 1.62
CHMP4A-207ENST00000533523 KDM5DQ9BY66 1539 aa25.17■■□□□ 1.62
CHMP4A-207ENST00000533523 FBXO31Q5XUX0 539 aaPredicted RBP25.17■■□□□ 1.62
CHMP4A-207ENST00000533523 DHX29Q7Z478 1369 aaKnown RBP25.16■■□□□ 1.62
CHMP4A-207ENST00000533523 PZPP20742 1482 aa25.14■■□□□ 1.61
CHMP4A-207ENST00000533523 FAM135AQ9P2D6 1515 aa25.13■■□□□ 1.61
CHMP4A-207ENST00000533523 DEPDC5O75140 1603 aa25.13■■□□□ 1.61
CHMP4A-207ENST00000533523 SCAF1Q9H7N4 1312 aaKnown RBP25.12■■□□□ 1.61
CHMP4A-207ENST00000533523 IQGAP1P46940 1657 aa25.11■■□□□ 1.61
CHMP4A-207ENST00000533523 ARHGEF5Q12774 1597 aa25.11■■□□□ 1.61
CHMP4A-207ENST00000533523 TNRQ92752 1358 aa25.11■■□□□ 1.61
CHMP4A-207ENST00000533523 MED14O60244 1454 aa25.1■■□□□ 1.61
CHMP4A-207ENST00000533523 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.09■■□□□ 1.61
CHMP4A-207ENST00000533523 KIF3BO15066 747 aa25.09■■□□□ 1.61
CHMP4A-207ENST00000533523 ZC3H13Q5T200 1668 aaKnown RBP25.09■■□□□ 1.61
CHMP4A-207ENST00000533523 XIRP1Q702N8 1843 aaKnown RBP25.08■■□□□ 1.61
CHMP4A-207ENST00000533523 LRRC7Q96NW7 1537 aa25.06■■□□□ 1.6
CHMP4A-207ENST00000533523 RNF17Q9BXT8 1623 aaKnown RBP25.05■■□□□ 1.6
CHMP4A-207ENST00000533523 NPHP4O75161 1426 aaPredicted RBP25.04■■□□□ 1.6
CHMP4A-207ENST00000533523 UGGT1Q9NYU2 1555 aa25.03■■□□□ 1.6
CHMP4A-207ENST00000533523 TOM1O60784 492 aa25.03■■□□□ 1.6
CHMP4A-207ENST00000533523 SYNMO15061 1565 aa25.01■■□□□ 1.59
CHMP4A-207ENST00000533523 RGS17Q9UGC6 210 aaPredicted RBP25.01■■□□□ 1.59
CHMP4A-207ENST00000533523 WASHC2CQ9Y4E1 1318 aa25.01■■□□□ 1.59
CHMP4A-207ENST00000533523 VPS8Q8N3P4 1428 aa25.01■■□□□ 1.59
CHMP4A-207ENST00000533523 LRRC9Q6ZRR7 1453 aa25.01■■□□□ 1.59
CHMP4A-207ENST00000533523 RSPH4AQ5TD94 716 aa25■■□□□ 1.59
CHMP4A-207ENST00000533523 MAST1Q9Y2H9 1570 aa25■■□□□ 1.59
CHMP4A-207ENST00000533523 MROH1Q8NDA8 1641 aa24.99■■□□□ 1.59
CHMP4A-207ENST00000533523 MIA2Q96PC5 1412 aa24.99■■□□□ 1.59
CHMP4A-207ENST00000533523 NLRP1Q9C000 1473 aa24.99■■□□□ 1.59
CHMP4A-207ENST00000533523 EIF2AK4Q9P2K8 1649 aaKnown RBP24.98■■□□□ 1.59
CHMP4A-207ENST00000533523 CFAP65Q6ZU64 1925 aaKnown RBP24.98■■□□□ 1.59
CHMP4A-207ENST00000533523 CEP152O94986 1710 aa24.98■■□□□ 1.59
CHMP4A-207ENST00000533523 UBR1Q8IWV7 1749 aa24.96■■□□□ 1.59
CHMP4A-207ENST00000533523 TSPY4P0CV99 314 aa24.96■■□□□ 1.59
CHMP4A-207ENST00000533523 TSPY10P0CW01 314 aa24.96■■□□□ 1.59
CHMP4A-207ENST00000533523 SENP3Q9H4L4 574 aaPredicted RBP24.96■■□□□ 1.59
CHMP4A-207ENST00000533523 ABCC3O15438 1527 aa24.95■■□□□ 1.58
CHMP4A-207ENST00000533523 ANKLE2Q86XL3 938 aa24.92■■□□□ 1.58
CHMP4A-207ENST00000533523 CROCC2H7BZ55 1655 aa24.91■■□□□ 1.58
CHMP4A-207ENST00000533523 PHF23Q9BUL5 403 aaPredicted RBP24.9■■□□□ 1.58
CHMP4A-207ENST00000533523 MYOM3Q5VTT5 1437 aa24.89■■□□□ 1.58
CHMP4A-207ENST00000533523 ERVK-7P63135 1459 aa24.89■■□□□ 1.57
CHMP4A-207ENST00000533523 MAP3K1Q13233 1512 aa24.88■■□□□ 1.57
CHMP4A-207ENST00000533523 THEMISQ8N1K5 641 aaPredicted RBP24.87■■□□□ 1.57
CHMP4A-207ENST00000533523 SETD1AO15047 1707 aaKnown RBP24.86■■□□□ 1.57
CHMP4A-207ENST00000533523 LOC105371045A0A1W2PR82 267 aa24.84■■□□□ 1.57
CHMP4A-207ENST00000533523 DUOX2Q9NRD8 1548 aa24.84■■□□□ 1.57
CHMP4A-207ENST00000533523 KANK4Q5T7N3 995 aaPredicted RBP24.83■■□□□ 1.57
CHMP4A-207ENST00000533523 ARHGAP23Q9P227 1491 aa24.82■■□□□ 1.56
CHMP4A-207ENST00000533523 PRDM15P57071 1507 aaPredicted RBP24.8■■□□□ 1.56
CHMP4A-207ENST00000533523 PTPN23Q9H3S7 1636 aa24.79■■□□□ 1.56
CHMP4A-207ENST00000533523 SLIT1O75093 1534 aa24.79■■□□□ 1.56
CHMP4A-207ENST00000533523 SCAF11Q99590 1463 aaKnown RBP24.78■■□□□ 1.56
CHMP4A-207ENST00000533523 LTKP29376 864 aa24.76■■□□□ 1.55
CHMP4A-207ENST00000533523 POTEAQ6S8J7 498 aa24.76■■□□□ 1.55
CHMP4A-207ENST00000533523 KIF15Q9NS87 1388 aa24.76■■□□□ 1.55
CHMP4A-207ENST00000533523 ERBINQ96RT1 1412 aa24.74■■□□□ 1.55
CHMP4A-207ENST00000533523 PIK3C2BO00750 1634 aa24.74■■□□□ 1.55
CHMP4A-207ENST00000533523 ROBO1Q9Y6N7 1651 aa24.74■■□□□ 1.55
CHMP4A-207ENST00000533523 ABCC5O15440 1437 aa24.7■■□□□ 1.55
CHMP4A-207ENST00000533523 DAPK1P53355 1430 aa24.68■■□□□ 1.54
CHMP4A-207ENST00000533523 ARHGAP31Q2M1Z3 1444 aa24.67■■□□□ 1.54
CHMP4A-207ENST00000533523 FAM135BQ49AJ0 1406 aa24.67■■□□□ 1.54
CHMP4A-207ENST00000533523 RRP7BPQ9NSQ0 103 aa24.66■■□□□ 1.54
CHMP4A-207ENST00000533523 APLP2Q06481 763 aa24.65■■□□□ 1.54
CHMP4A-207ENST00000533523 FGD6Q6ZV73 1430 aa24.65■■□□□ 1.54
CHMP4A-207ENST00000533523 TET3O43151 1660 aa24.65■■□□□ 1.54
CHMP4A-207ENST00000533523 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.64■■□□□ 1.541e-7■■■■□ 21.7
CHMP4A-207ENST00000533523 SRCAPQ6ZRS2 3230 aa24.63■■□□□ 1.53
CHMP4A-207ENST00000533523 KANK1Q14678 1352 aa24.62■■□□□ 1.53
CHMP4A-207ENST00000533523 NWD1Q149M9 1564 aa24.61■■□□□ 1.53
CHMP4A-207ENST00000533523 KDM5AP29375 1690 aaKnown RBP24.61■■□□□ 1.53
CHMP4A-207ENST00000533523 TMEM94Q12767 1356 aa24.6■■□□□ 1.53
CHMP4A-207ENST00000533523 EFCAB6Q5THR3 1501 aa24.58■■□□□ 1.53
CHMP4A-207ENST00000533523 TXNDC2Q86VQ3 553 aa24.58■■□□□ 1.53
CHMP4A-207ENST00000533523 RBM33Q96EV2 1170 aaKnown RBP24.58■■□□□ 1.53
CHMP4A-207ENST00000533523 ANKRD30AQ9BXX3 1397 aa24.57■■□□□ 1.52
CHMP4A-207ENST00000533523 LMTK2Q8IWU2 1503 aa24.57■■□□□ 1.52
CHMP4A-207ENST00000533523 TMEM2Q9UHN6 1383 aa24.56■■□□□ 1.52
CHMP4A-207ENST00000533523 PHLPP1O60346 1717 aa24.56■■□□□ 1.52
CHMP4A-207ENST00000533523 EID1Q9Y6B2 187 aa24.56■■□□□ 1.52
CHMP4A-207ENST00000533523 COL16A1Q07092 1604 aaPredicted RBP24.55■■□□□ 1.52
CHMP4A-207ENST00000533523 STAG3Q9UJ98 1225 aa24.55■■□□□ 1.52
CHMP4A-207ENST00000533523 CHIC2Q9UKJ5 165 aa24.55■■□□□ 1.52
CHMP4A-207ENST00000533523 LRP6O75581 1613 aa24.53■■□□□ 1.52
CHMP4A-207ENST00000533523 ADGRB3O60242 1522 aa24.53■■□□□ 1.52
CHMP4A-207ENST00000533523 MYO5BQ9ULV0 1848 aa24.52■■□□□ 1.52
CHMP4A-207ENST00000533523 ADGRL2O95490 1459 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms