RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 THEMISQ8N1K5 641 aaPredicted RBP18.37■□□□□ 0.53
TRAPPC4-213ENST00000533149 VWDEQ8N2E2 1590 aa18.36■□□□□ 0.53
TRAPPC4-213ENST00000533149 CFDP1Q9UEE9 299 aaPredicted RBP18.36■□□□□ 0.53
TRAPPC4-213ENST00000533149 ALKQ9UM73 1620 aa18.35■□□□□ 0.53
TRAPPC4-213ENST00000533149 ADGBQ8N7X0 1667 aa18.34■□□□□ 0.53
TRAPPC4-213ENST00000533149 NPHP4O75161 1426 aaPredicted RBP18.33■□□□□ 0.52
TRAPPC4-213ENST00000533149 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.33■□□□□ 0.52
TRAPPC4-213ENST00000533149 MED14O60244 1454 aa18.32■□□□□ 0.52
TRAPPC4-213ENST00000533149 FBXO31Q5XUX0 539 aaPredicted RBP18.32■□□□□ 0.52
TRAPPC4-213ENST00000533149 RGS17Q9UGC6 210 aaPredicted RBP18.31■□□□□ 0.52
TRAPPC4-213ENST00000533149 DEPDC5O75140 1603 aa18.3■□□□□ 0.52
TRAPPC4-213ENST00000533149 PZPP20742 1482 aa18.3■□□□□ 0.52
TRAPPC4-213ENST00000533149 CCNB3Q8WWL7 1395 aa18.29■□□□□ 0.52
TRAPPC4-213ENST00000533149 NLRP1Q9C000 1473 aa18.29■□□□□ 0.52
TRAPPC4-213ENST00000533149 FAM135AQ9P2D6 1515 aa18.29■□□□□ 0.52
TRAPPC4-213ENST00000533149 DHX29Q7Z478 1369 aaKnown RBP18.28■□□□□ 0.52
TRAPPC4-213ENST00000533149 LRRC7Q96NW7 1537 aa18.28■□□□□ 0.52
TRAPPC4-213ENST00000533149 UGGT1Q9NYU2 1555 aa18.27■□□□□ 0.52
TRAPPC4-213ENST00000533149 FYCO1Q9BQS8 1478 aa18.27■□□□□ 0.52
TRAPPC4-213ENST00000533149 RNF17Q9BXT8 1623 aaKnown RBP18.27■□□□□ 0.52
TRAPPC4-213ENST00000533149 RTEL1-TNFRSF6BF6WH68 1400 aa18.27■□□□□ 0.52
TRAPPC4-213ENST00000533149 MIA2Q96PC5 1412 aa18.27■□□□□ 0.52
TRAPPC4-213ENST00000533149 WASHC2CQ9Y4E1 1318 aa18.26■□□□□ 0.51
TRAPPC4-213ENST00000533149 KDM5DQ9BY66 1539 aa18.25■□□□□ 0.51
TRAPPC4-213ENST00000533149 KIF3BO15066 747 aa18.25■□□□□ 0.51
TRAPPC4-213ENST00000533149 IQGAP1P46940 1657 aa18.25■□□□□ 0.51
TRAPPC4-213ENST00000533149 SYNMO15061 1565 aa18.24■□□□□ 0.51
TRAPPC4-213ENST00000533149 MBD5Q9P267 1494 aa18.2■□□□□ 0.5
TRAPPC4-213ENST00000533149 STRCP1A6NGW2 1772 aa18.19■□□□□ 0.5
TRAPPC4-213ENST00000533149 POTEAQ6S8J7 498 aa18.19■□□□□ 0.5
TRAPPC4-213ENST00000533149 ZNF644Q9H582 1327 aaPredicted RBP18.19■□□□□ 0.5
TRAPPC4-213ENST00000533149 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
TRAPPC4-213ENST00000533149 FAM135BQ49AJ0 1406 aa18.15■□□□□ 0.5
TRAPPC4-213ENST00000533149 RSPH4AQ5TD94 716 aa18.14■□□□□ 0.49
TRAPPC4-213ENST00000533149 CCDC141Q6ZP82 1450 aa18.11■□□□□ 0.49
TRAPPC4-213ENST00000533149 TIAM1Q13009 1591 aa18.1■□□□□ 0.49
TRAPPC4-213ENST00000533149 SCAF11Q99590 1463 aaKnown RBP18.1■□□□□ 0.49
TRAPPC4-213ENST00000533149 ZC3H13Q5T200 1668 aaKnown RBP18.1■□□□□ 0.49
TRAPPC4-213ENST00000533149 TXNDC2Q86VQ3 553 aa18.07■□□□□ 0.48
TRAPPC4-213ENST00000533149 ERVK-7P63135 1459 aa18.06■□□□□ 0.48
TRAPPC4-213ENST00000533149 EID1Q9Y6B2 187 aa18.05■□□□□ 0.48
TRAPPC4-213ENST00000533149 TSPY4P0CV99 314 aa18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 TSPY10P0CW01 314 aa18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 CEP162Q5TB80 1403 aa18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 ABCC3O15438 1527 aa18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 EHBP1L1Q8N3D4 1523 aa18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 XIRP1Q702N8 1843 aaKnown RBP18.04■□□□□ 0.48
TRAPPC4-213ENST00000533149 LTKP29376 864 aa18.03■□□□□ 0.48
TRAPPC4-213ENST00000533149 UBR1Q8IWV7 1749 aa18.03■□□□□ 0.48
TRAPPC4-213ENST00000533149 ARHGAP23Q9P227 1491 aa18.02■□□□□ 0.48
TRAPPC4-213ENST00000533149 SLIT1O75093 1534 aa18.02■□□□□ 0.48
TRAPPC4-213ENST00000533149 CAMSAP2Q08AD1 1489 aa18.01■□□□□ 0.47
TRAPPC4-213ENST00000533149 NCOA2Q15596 1464 aa18.01■□□□□ 0.47
TRAPPC4-213ENST00000533149 TMEM94Q12767 1356 aa18.01■□□□□ 0.47
TRAPPC4-213ENST00000533149 SETD1AO15047 1707 aaKnown RBP18■□□□□ 0.47
TRAPPC4-213ENST00000533149 ROBO1Q9Y6N7 1651 aa18■□□□□ 0.47
TRAPPC4-213ENST00000533149 LRRC9Q6ZRR7 1453 aa17.99■□□□□ 0.47
TRAPPC4-213ENST00000533149 UPF1Q92900 1129 aaKnown RBP eCLIP17.98■□□□□ 0.47
TRAPPC4-213ENST00000533149 KCNA6P17658 529 aa17.98■□□□□ 0.47
TRAPPC4-213ENST00000533149 ARHGEF5Q12774 1597 aa17.97■□□□□ 0.47
TRAPPC4-213ENST00000533149 JCADQ9P266 1359 aa17.97■□□□□ 0.47
TRAPPC4-213ENST00000533149 PROSER2Q86WR7 435 aaPredicted RBP17.97■□□□□ 0.47
TRAPPC4-213ENST00000533149 LOC105371045A0A1W2PR82 267 aa17.96■□□□□ 0.46
TRAPPC4-213ENST00000533149 EIF2AK4Q9P2K8 1649 aaKnown RBP17.95■□□□□ 0.46
TRAPPC4-213ENST00000533149 ZNF772Q68DY9 489 aaPredicted RBP17.95■□□□□ 0.46
TRAPPC4-213ENST00000533149 TMEM2Q9UHN6 1383 aa17.93■□□□□ 0.46
TRAPPC4-213ENST00000533149 STAG3Q9UJ98 1225 aa17.93■□□□□ 0.46
TRAPPC4-213ENST00000533149 MAP3K1Q13233 1512 aa17.92■□□□□ 0.46
TRAPPC4-213ENST00000533149 SLAIN2Q9P270 581 aa17.92■□□□□ 0.46
TRAPPC4-213ENST00000533149 MSH6P52701 1360 aa17.92■□□□□ 0.46
TRAPPC4-213ENST00000533149 ARHGAP31Q2M1Z3 1444 aa17.91■□□□□ 0.46
TRAPPC4-213ENST00000533149 PHLPP1O60346 1717 aa17.9■□□□□ 0.46
TRAPPC4-213ENST00000533149 PRDM15P57071 1507 aaPredicted RBP17.9■□□□□ 0.46
TRAPPC4-213ENST00000533149 SPATA31A6Q5VVP1 1343 aa17.9■□□□□ 0.46
TRAPPC4-213ENST00000533149 CFAP65Q6ZU64 1925 aaKnown RBP17.9■□□□□ 0.46
TRAPPC4-213ENST00000533149 MROH1Q8NDA8 1641 aa17.89■□□□□ 0.46
TRAPPC4-213ENST00000533149 MEX3CQ5U5Q3 659 aaKnown RBP17.89■□□□□ 0.45
TRAPPC4-213ENST00000533149 TRIM52Q96A61 297 aa17.89■□□□□ 0.45
TRAPPC4-213ENST00000533149 RBM33Q96EV2 1170 aaKnown RBP17.89■□□□□ 0.45
TRAPPC4-213ENST00000533149 CEP152O94986 1710 aa17.89■□□□□ 0.45
TRAPPC4-213ENST00000533149 MAST1Q9Y2H9 1570 aa17.89■□□□□ 0.45
TRAPPC4-213ENST00000533149 NKTRP30414 1462 aaKnown RBP17.88■□□□□ 0.45
TRAPPC4-213ENST00000533149 SLC26A8Q96RN1 970 aa17.87■□□□□ 0.45
TRAPPC4-213ENST00000533149 FGD6Q6ZV73 1430 aa17.86■□□□□ 0.45
TRAPPC4-213ENST00000533149 PIK3C2BO00750 1634 aa17.86■□□□□ 0.45
TRAPPC4-213ENST00000533149 TET3O43151 1660 aa17.85■□□□□ 0.45
TRAPPC4-213ENST00000533149 RXRBP28702 533 aa17.85■□□□□ 0.45
TRAPPC4-213ENST00000533149 EFCAB6Q5THR3 1501 aa17.84■□□□□ 0.45
TRAPPC4-213ENST00000533149 DUOX2Q9NRD8 1548 aa17.84■□□□□ 0.45
TRAPPC4-213ENST00000533149 KDM5AP29375 1690 aaKnown RBP17.84■□□□□ 0.45
TRAPPC4-213ENST00000533149 NWD1Q149M9 1564 aa17.83■□□□□ 0.44
TRAPPC4-213ENST00000533149 LRP6O75581 1613 aa17.83■□□□□ 0.44
TRAPPC4-213ENST00000533149 COL16A1Q07092 1604 aaPredicted RBP17.82■□□□□ 0.44
TRAPPC4-213ENST00000533149 CDK12Q9NYV4 1490 aaPredicted RBP17.82■□□□□ 0.44
TRAPPC4-213ENST00000533149 BCANQ96GW7 911 aa17.81■□□□□ 0.44
TRAPPC4-213ENST00000533149 IDI1Q13907 227 aa17.8■□□□□ 0.44
TRAPPC4-213ENST00000533149 KANK1Q14678 1352 aa17.78■□□□□ 0.44
TRAPPC4-213ENST00000533149 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.77■□□□□ 0.44
TRAPPC4-213ENST00000533149 ERBINQ96RT1 1412 aa17.77■□□□□ 0.44
TRAPPC4-213ENST00000533149 NCOA3Q9Y6Q9 1424 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms