RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	HFM1	A2PYH4	1435 aa		14.04	□□□□□ -0.16
NXF1-209	ENST00000531474	NAIP	Q13075	1403 aa		14.04	□□□□□ -0.16
NXF1-209	ENST00000531474	GCC2	Q8IWJ2	1684 aa		14.03	□□□□□ -0.16
NXF1-209	ENST00000531474	PLPPR3	Q6T4P5	718 aa		14.02	□□□□□ -0.17
NXF1-209	ENST00000531474	ADAMTSL3	P82987	1691 aa		14.01	□□□□□ -0.17
NXF1-209	ENST00000531474	MADD	Q8WXG6	1647 aa		14.01	□□□□□ -0.17
NXF1-209	ENST00000531474	RNF17	Q9BXT8	1623 aa	Known RBP	14.01	□□□□□ -0.17
NXF1-209	ENST00000531474	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
NXF1-209	ENST00000531474	ESF1	Q9H501	851 aa	Known RBP	14.01	□□□□□ -0.17
NXF1-209	ENST00000531474	KDM4F	A0A1W2PPD8	638 aa		14	□□□□□ -0.17
NXF1-209	ENST00000531474	MROH1	Q8NDA8	1641 aa		13.99	□□□□□ -0.17
NXF1-209	ENST00000531474	PRDM15	P57071	1507 aa	Predicted RBP	13.99	□□□□□ -0.17
NXF1-209	ENST00000531474	DEPDC5	O75140	1603 aa		13.98	□□□□□ -0.17
NXF1-209	ENST00000531474	FER1L4	A9Z1Z3	1794 aa		13.98	□□□□□ -0.17
NXF1-209	ENST00000531474	SETD5	Q9C0A6	1442 aa		13.98	□□□□□ -0.17
NXF1-209	ENST00000531474	RIMS1	Q86UR5	1692 aa	Known RBP	13.98	□□□□□ -0.17
NXF1-209	ENST00000531474	KANK1	Q14678	1352 aa		13.97	□□□□□ -0.17
NXF1-209	ENST00000531474	WASHC2C	Q9Y4E1	1318 aa		13.97	□□□□□ -0.17
NXF1-209	ENST00000531474	KDM5D	Q9BY66	1539 aa		13.97	□□□□□ -0.17
NXF1-209	ENST00000531474	PPP6R1	Q9UPN7	881 aa		13.97	□□□□□ -0.17
NXF1-209	ENST00000531474	CNTLN	Q9NXG0	1405 aa		13.97	□□□□□ -0.17
NXF1-209	ENST00000531474	UNC13B	O14795	1591 aa		13.96	□□□□□ -0.17
NXF1-209	ENST00000531474	ABCC3	O15438	1527 aa		13.95	□□□□□ -0.18
NXF1-209	ENST00000531474	FAM135A	Q9P2D6	1515 aa		13.95	□□□□□ -0.18
NXF1-209	ENST00000531474	CLTC	Q00610	1675 aa	Known RBP	13.95	□□□□□ -0.18
NXF1-209	ENST00000531474	NUP155	O75694	1391 aa		13.94	□□□□□ -0.18
NXF1-209	ENST00000531474	RAB3GAP2	Q9H2M9	1393 aa		13.94	□□□□□ -0.18
NXF1-209	ENST00000531474	PTPRM	P28827	1452 aa		13.93	□□□□□ -0.18
NXF1-209	ENST00000531474	TRIM52	Q96A61	297 aa		13.93	□□□□□ -0.18
NXF1-209	ENST00000531474	ZC3H13	Q5T200	1668 aa	Known RBP	13.93	□□□□□ -0.18
NXF1-209	ENST00000531474	VWDE	Q8N2E2	1590 aa		13.92	□□□□□ -0.18
NXF1-209	ENST00000531474	CEP152	O94986	1710 aa		13.92	□□□□□ -0.18
NXF1-209	ENST00000531474	ZMYM3	Q14202	1370 aa		13.91	□□□□□ -0.18
NXF1-209	ENST00000531474	MROH2A	A6NES4	1674 aa		13.91	□□□□□ -0.18
NXF1-209	ENST00000531474	CLSPN	Q9HAW4	1339 aa		13.9	□□□□□ -0.18
NXF1-209	ENST00000531474	LMTK2	Q8IWU2	1503 aa		13.9	□□□□□ -0.18
NXF1-209	ENST00000531474	CEBPA	P49715	358 aa	Predicted RBP	13.9	□□□□□ -0.18
NXF1-209	ENST00000531474	CAMSAP1	Q5T5Y3	1602 aa		13.9	□□□□□ -0.19
NXF1-209	ENST00000531474	IQGAP3	Q86VI3	1631 aa		13.9	□□□□□ -0.19
NXF1-209	ENST00000531474	C3	P01024	1663 aa		13.88	□□□□□ -0.19
NXF1-209	ENST00000531474	EFCAB6	Q5THR3	1501 aa		13.88	□□□□□ -0.19
NXF1-209	ENST00000531474	PZP	P20742	1482 aa		13.87	□□□□□ -0.19
NXF1-209	ENST00000531474	TET3	O43151	1660 aa		13.87	□□□□□ -0.19
NXF1-209	ENST00000531474	ACIN1	Q9UKV3	1341 aa	Known RBP	13.87	□□□□□ -0.19
NXF1-209	ENST00000531474	NPAT	Q14207	1427 aa		13.85	□□□□□ -0.19
NXF1-209	ENST00000531474	ARHGAP31	Q2M1Z3	1444 aa		13.85	□□□□□ -0.19
NXF1-209	ENST00000531474	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.85	□□□□□ -0.19
NXF1-209	ENST00000531474	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.85	□□□□□ -0.19
NXF1-209	ENST00000531474	ERVK-7	P63135	1459 aa		13.83	□□□□□ -0.2
NXF1-209	ENST00000531474	RPRD2	Q5VT52	1461 aa	Known RBP	13.82	□□□□□ -0.2
NXF1-209	ENST00000531474	PKD2	Q13563	968 aa		13.82	□□□□□ -0.2
NXF1-209	ENST00000531474	MPHOSPH9	Q99550	1183 aa		13.82	□□□□□ -0.2
NXF1-209	ENST00000531474	TNR	Q92752	1358 aa		13.82	□□□□□ -0.2
NXF1-209	ENST00000531474	SPATA31D1	Q6ZQQ2	1576 aa		13.81	□□□□□ -0.2
NXF1-209	ENST00000531474		E9PCH4	1651 aa		13.81	□□□□□ -0.2
NXF1-209	ENST00000531474	PREX1	Q8TCU6	1659 aa		13.8	□□□□□ -0.2
NXF1-209	ENST00000531474	FOXD1	Q16676	465 aa		13.78	□□□□□ -0.2
NXF1-209	ENST00000531474	NOS1	P29475	1434 aa		13.78	□□□□□ -0.2
NXF1-209	ENST00000531474	UHRF1BP1	Q6BDS2	1440 aa		13.77	□□□□□ -0.21
NXF1-209	ENST00000531474	MYO3A	Q8NEV4	1616 aa		13.77	□□□□□ -0.21
NXF1-209	ENST00000531474	SYNM	O15061	1565 aa		13.76	□□□□□ -0.21
NXF1-209	ENST00000531474	NLRP1	Q9C000	1473 aa		13.74	□□□□□ -0.21
NXF1-209	ENST00000531474	PTPRT	O14522	1441 aa		13.74	□□□□□ -0.21
NXF1-209	ENST00000531474	SPHKAP	Q2M3C7	1700 aa		13.74	□□□□□ -0.21
NXF1-209	ENST00000531474	UGGT1	Q9NYU2	1555 aa		13.74	□□□□□ -0.21
NXF1-209	ENST00000531474	TRPM2	O94759	1503 aa		13.74	□□□□□ -0.21
NXF1-209	ENST00000531474	CFAP65	Q6ZU64	1925 aa	Known RBP	13.73	□□□□□ -0.21
NXF1-209	ENST00000531474	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.73	□□□□□ -0.21
NXF1-209	ENST00000531474	A2ML1	A8K2U0	1454 aa		13.73	□□□□□ -0.21
NXF1-209	ENST00000531474	PLA2R1	Q13018	1463 aa		13.73	□□□□□ -0.21
NXF1-209	ENST00000531474	SLC52A1	Q9NWF4	448 aa		13.72	□□□□□ -0.21
NXF1-209	ENST00000531474	LMTK3	Q96Q04	1460 aa		13.72	□□□□□ -0.21
NXF1-209	ENST00000531474	IDI1	Q13907	227 aa		13.71	□□□□□ -0.21
NXF1-209	ENST00000531474	DHX57	Q6P158	1386 aa	Known RBP	13.71	□□□□□ -0.22
NXF1-209	ENST00000531474	ZNF142	P52746	1687 aa	Predicted RBP	13.7	□□□□□ -0.22
NXF1-209	ENST00000531474	STAG3	Q9UJ98	1225 aa		13.7	□□□□□ -0.22
NXF1-209	ENST00000531474	PIK3C2B	O00750	1634 aa		13.7	□□□□□ -0.22
NXF1-209	ENST00000531474	CLTCL1	P53675	1640 aa		13.69	□□□□□ -0.22
NXF1-209	ENST00000531474	CHGA	P10645	457 aa	Known RBP	13.69	□□□□□ -0.22
NXF1-209	ENST00000531474	HSPA2	P54652	639 aa		13.69	□□□□□ -0.22
NXF1-209	ENST00000531474	CCDC144A	A2RUR9	1427 aa		13.69	□□□□□ -0.22
NXF1-209	ENST00000531474	ADGRB3	O60242	1522 aa		13.69	□□□□□ -0.22
NXF1-209	ENST00000531474	ANKRD30B	Q9BXX2	1392 aa		13.68	□□□□□ -0.22
NXF1-209	ENST00000531474	SETD1B	Q9UPS6	1966 aa	Known RBP	13.67	□□□□□ -0.22
NXF1-209	ENST00000531474	SENP3	Q9H4L4	574 aa	Predicted RBP	13.67	□□□□□ -0.22
NXF1-209	ENST00000531474	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.66	□□□□□ -0.22
NXF1-209	ENST00000531474	UBR1	Q8IWV7	1749 aa		13.66	□□□□□ -0.22
NXF1-209	ENST00000531474	TMEM131L	A2VDJ0	1609 aa		13.64	□□□□□ -0.23
NXF1-209	ENST00000531474	KDM5A	P29375	1690 aa	Known RBP	13.63	□□□□□ -0.23
NXF1-209	ENST00000531474	TIMELESS	Q9UNS1	1208 aa		13.63	□□□□□ -0.23
NXF1-209	ENST00000531474	TMEM2	Q9UHN6	1383 aa		13.62	□□□□□ -0.23
NXF1-209	ENST00000531474	ZNF326	Q5BKZ1	582 aa	Known RBP	13.62	□□□□□ -0.23
NXF1-209	ENST00000531474	KIF1B	O60333	1816 aa		13.6	□□□□□ -0.23
NXF1-209	ENST00000531474	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.6	□□□□□ -0.23
NXF1-209	ENST00000531474	SPATA31E1	Q6ZUB1	1445 aa		13.6	□□□□□ -0.23
NXF1-209	ENST00000531474	RIMS2	Q9UQ26	1411 aa		13.6	□□□□□ -0.23
NXF1-209	ENST00000531474	ARHGAP23	Q9P227	1491 aa		13.6	□□□□□ -0.23
NXF1-209	ENST00000531474	SLIT1	O75093	1534 aa		13.59	□□□□□ -0.23
NXF1-209	ENST00000531474	RGL3	Q3MIN7	710 aa		13.59	□□□□□ -0.23
NXF1-209	ENST00000531474	ANKLE2	Q86XL3	938 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms