RNA–Protein interactions for RNA: ENST00000529828.5

PTPRC-213, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 2,336 nt, Biotype non stop decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-213ENST00000529828 SAMD9LQ8IVG5 1584 aa5.82□□□□□ -1.48
PTPRC-213ENST00000529828 SUPT6HQ7KZ85 1726 aaKnown RBP5.82□□□□□ -1.48
PTPRC-213ENST00000529828 NPATQ14207 1427 aa5.82□□□□□ -1.48
PTPRC-213ENST00000529828 CLTCQ00610 1675 aaKnown RBP5.82□□□□□ -1.48
PTPRC-213ENST00000529828 HNRNPMP52272 730 aaKnown RBP eCLIP5.82□□□□□ -1.48
PTPRC-213ENST00000529828 PIP4K2BP78356 416 aa5.82□□□□□ -1.48
PTPRC-213ENST00000529828 REM2Q8IYK8 340 aaPredicted RBP5.82□□□□□ -1.48
PTPRC-213ENST00000529828 MYO3AQ8NEV4 1616 aa5.82□□□□□ -1.48
PTPRC-213ENST00000529828 SPAG9O60271 1321 aaKnown RBP5.82□□□□□ -1.48
PTPRC-213ENST00000529828 GGT6Q6P531 493 aa5.81□□□□□ -1.48
PTPRC-213ENST00000529828 CDC42BPAQ5VT25 1732 aa5.81□□□□□ -1.48
PTPRC-213ENST00000529828 HSPA1LP34931 641 aa5.81□□□□□ -1.48
PTPRC-213ENST00000529828 CEP170BQ9Y4F5 1589 aaPredicted RBP5.81□□□□□ -1.48
PTPRC-213ENST00000529828 MROH2AA6NES4 1674 aa5.8□□□□□ -1.48
PTPRC-213ENST00000529828 CCDC18Q5T9S5 1454 aa5.8□□□□□ -1.48
PTPRC-213ENST00000529828 MYCNP04198 464 aaPredicted RBP5.8□□□□□ -1.48
PTPRC-213ENST00000529828 ATP7AQ04656 1500 aa5.8□□□□□ -1.48
PTPRC-213ENST00000529828 PTPRKQ15262 1439 aa5.8□□□□□ -1.48
PTPRC-213ENST00000529828 CASKIN1Q8WXD9 1431 aa5.8□□□□□ -1.48
PTPRC-213ENST00000529828 MED1Q15648 1581 aaPredicted RBP5.8□□□□□ -1.48
PTPRC-213ENST00000529828 TCOF1Q13428 1488 aaKnown RBP5.8□□□□□ -1.48
PTPRC-213ENST00000529828 FXR2P51116 673 aaKnown RBP eCLIP5.8□□□□□ -1.48
PTPRC-213ENST00000529828 ZNF142P52746 1687 aaPredicted RBP5.79□□□□□ -1.48
PTPRC-213ENST00000529828 A2MP01023 1474 aa5.79□□□□□ -1.48
PTPRC-213ENST00000529828 PLA2R1Q13018 1463 aa5.79□□□□□ -1.48
PTPRC-213ENST00000529828 PKD2Q13563 968 aa5.79□□□□□ -1.48
PTPRC-213ENST00000529828 GPATCH8Q9UKJ3 1502 aaKnown RBP5.79□□□□□ -1.48
PTPRC-213ENST00000529828 PLXNC1O60486 1568 aa5.79□□□□□ -1.48
PTPRC-213ENST00000529828 INO80Q9ULG1 1556 aaPredicted RBP5.78□□□□□ -1.48
PTPRC-213ENST00000529828 FBXO31Q5XUX0 539 aaPredicted RBP5.77□□□□□ -1.49
PTPRC-213ENST00000529828 CFDP1Q9UEE9 299 aaPredicted RBP5.77□□□□□ -1.49
PTPRC-213ENST00000529828 ZNF644Q9H582 1327 aaPredicted RBP5.77□□□□□ -1.49
PTPRC-213ENST00000529828 A2ML1A8K2U0 1454 aa5.77□□□□□ -1.49
PTPRC-213ENST00000529828 FYCO1Q9BQS8 1478 aa5.77□□□□□ -1.49
PTPRC-213ENST00000529828 NEURL4Q96JN8 1562 aa5.77□□□□□ -1.49
PTPRC-213ENST00000529828 CCNB3Q8WWL7 1395 aa5.77□□□□□ -1.49
PTPRC-213ENST00000529828 DNMT1P26358 1616 aaKnown RBP5.77□□□□□ -1.49
PTPRC-213ENST00000529828 SHANK2Q9UPX8 1470 aa5.76□□□□□ -1.49
PTPRC-213ENST00000529828 TOM1O60784 492 aa5.76□□□□□ -1.49
PTPRC-213ENST00000529828 TNRQ92752 1358 aa5.76□□□□□ -1.49
PTPRC-213ENST00000529828 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.76□□□□□ -1.49
PTPRC-213ENST00000529828 KIAA1107Q9UPP5 1409 aa5.76□□□□□ -1.49
PTPRC-213ENST00000529828 PLEKHH2Q8IVE3 1493 aa5.75□□□□□ -1.49
PTPRC-213ENST00000529828 MTUS2Q5JR59 1369 aa5.75□□□□□ -1.49
PTPRC-213ENST00000529828 CPS1P31327 1500 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 POLR1AO95602 1720 aaPredicted RBP5.74□□□□□ -1.49
PTPRC-213ENST00000529828 PITPNM1O00562 1244 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 KIF3BO15066 747 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 ALKQ9UM73 1620 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 TIAM1Q13009 1591 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 VWDEQ8N2E2 1590 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 ADGBQ8N7X0 1667 aa5.74□□□□□ -1.49
PTPRC-213ENST00000529828 MBD5Q9P267 1494 aa5.73□□□□□ -1.49
PTPRC-213ENST00000529828 NPHP4O75161 1426 aaPredicted RBP5.73□□□□□ -1.49
PTPRC-213ENST00000529828 DHX29Q7Z478 1369 aaKnown RBP5.73□□□□□ -1.49
PTPRC-213ENST00000529828 KDM5DQ9BY66 1539 aa5.73□□□□□ -1.49
PTPRC-213ENST00000529828 PZPP20742 1482 aa5.73□□□□□ -1.49
PTPRC-213ENST00000529828 WASHC2CQ9Y4E1 1318 aa5.73□□□□□ -1.49
PTPRC-213ENST00000529828 ANKLE2Q86XL3 938 aa5.73□□□□□ -1.49
PTPRC-213ENST00000529828 UGGT1Q9NYU2 1555 aa5.72□□□□□ -1.49
PTPRC-213ENST00000529828 FAM135AQ9P2D6 1515 aa5.71□□□□□ -1.49
PTPRC-213ENST00000529828 MIA2Q96PC5 1412 aa5.71□□□□□ -1.5
PTPRC-213ENST00000529828 THEMISQ8N1K5 641 aaPredicted RBP5.71□□□□□ -1.5
PTPRC-213ENST00000529828 LRRC7Q96NW7 1537 aa5.71□□□□□ -1.5
PTPRC-213ENST00000529828 STRCP1A6NGW2 1772 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 EHBP1L1Q8N3D4 1523 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 LHX8Q68G74 356 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 CAMSAP2Q08AD1 1489 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 CCDC141Q6ZP82 1450 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 RTEL1-TNFRSF6BF6WH68 1400 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 IQGAP1P46940 1657 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 NLRP1Q9C000 1473 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 SRCAPQ6ZRS2 3230 aa5.7□□□□□ -1.5
PTPRC-213ENST00000529828 MED14O60244 1454 aa5.69□□□□□ -1.5
PTPRC-213ENST00000529828 RNF17Q9BXT8 1623 aaKnown RBP5.69□□□□□ -1.5
PTPRC-213ENST00000529828 RGS17Q9UGC6 210 aaPredicted RBP5.69□□□□□ -1.5
PTPRC-213ENST00000529828 KCNA4P22459 653 aa5.69□□□□□ -1.5
PTPRC-213ENST00000529828 CEP162Q5TB80 1403 aa5.69□□□□□ -1.5
PTPRC-213ENST00000529828 DEPDC5O75140 1603 aa5.68□□□□□ -1.5
PTPRC-213ENST00000529828 ABCC3O15438 1527 aa5.68□□□□□ -1.5
PTPRC-213ENST00000529828 NCOA2Q15596 1464 aa5.68□□□□□ -1.5
PTPRC-213ENST00000529828 ERVK-7P63135 1459 aa5.67□□□□□ -1.5
PTPRC-213ENST00000529828 SYNMO15061 1565 aa5.67□□□□□ -1.5
PTPRC-213ENST00000529828 RBM33Q96EV2 1170 aaKnown RBP5.67□□□□□ -1.5
PTPRC-213ENST00000529828 LTKP29376 864 aa5.66□□□□□ -1.5
PTPRC-213ENST00000529828 POTEAQ6S8J7 498 aa5.66□□□□□ -1.5
PTPRC-213ENST00000529828 ZC3H13Q5T200 1668 aaKnown RBP5.66□□□□□ -1.5
PTPRC-213ENST00000529828 SCAF11Q99590 1463 aaKnown RBP5.66□□□□□ -1.5
PTPRC-213ENST00000529828 TSPY4P0CV99 314 aa5.66□□□□□ -1.5
PTPRC-213ENST00000529828 TSPY10P0CW01 314 aa5.66□□□□□ -1.5
PTPRC-213ENST00000529828 TXNDC2Q86VQ3 553 aa5.65□□□□□ -1.5
PTPRC-213ENST00000529828 CEP152O94986 1710 aa5.65□□□□□ -1.5
PTPRC-213ENST00000529828 MROH1Q8NDA8 1641 aa5.65□□□□□ -1.51
PTPRC-213ENST00000529828 EVX2Q03828 476 aa5.65□□□□□ -1.51
PTPRC-213ENST00000529828 ARHGEF5Q12774 1597 aa5.65□□□□□ -1.51
PTPRC-213ENST00000529828 SETD1AO15047 1707 aaKnown RBP5.65□□□□□ -1.51
PTPRC-213ENST00000529828 UBR1Q8IWV7 1749 aa5.65□□□□□ -1.51
PTPRC-213ENST00000529828 CFAP65Q6ZU64 1925 aaKnown RBP5.64□□□□□ -1.51
PTPRC-213ENST00000529828 XIRP1Q702N8 1843 aaKnown RBP5.64□□□□□ -1.51
PTPRC-213ENST00000529828 TMEM94Q12767 1356 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms